
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  142 (  142),  selected  142 , name T0324TS393_5-D1
# Molecule2: number of CA atoms  142 ( 1080),  selected  142 , name T0324_D1.pdb
# PARAMETERS: T0324TS393_5-D1.T0324_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   133         1 - 198         4.74     7.18
  LONGEST_CONTINUOUS_SEGMENT:   133         2 - 199         4.99     7.09
  LCS_AVERAGE:     89.15

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36       140 - 175         1.92     7.13
  LCS_AVERAGE:     13.43

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    15       161 - 175         0.89     7.24
  LCS_AVERAGE:      5.12

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     M       1     M       1      5    7  133     3    3    5   14   27   53   66   76   91  103  110  114  117  120  124  125  125  126  128  129 
LCS_GDT     T       2     T       2      5    7  133     3    4    7   18   32   53   70   82   92  104  111  114  118  122  124  125  125  126  128  129 
LCS_GDT     Y       3     Y       3      5   12  133     3    4   10   28   49   67   84   95  103  107  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     Q       4     Q       4      5   12  133     3   15   27   45   63   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A       5     A       5      5   12  133     3   12   29   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L       6     L       6      4   12  133     3   18   29   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     M       7     M       7      4   12  133     3   18   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     F       8     F       8      4   12  133    10   16   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     D       9     D       9      5   12  133     3   10   29   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     I      10     I      10      5   12  133     3   10   23   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     D      11     D      11      5   12  133     3    6   21   44   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     G      12     G      12      5   12  133     3   11   21   44   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     T      13     T      13      5   12  133     3   11   21   41   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L      14     L      14      4   12  133     3    4   12   30   56   73   85   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     T      15     T      15      4    9  133     3    4    5    6   17   19   36   60   88   97  107  113  118  122  124  125  125  126  128  129 
LCS_GDT     N      16     N      16      4    9  133     3    4    6    8    9   14   23   53   71   97  103  113  118  122  124  125  125  126  128  129 
LCS_GDT     E      82     E      82      3   14  133     3    3    4   10   12   52   71   88  102  106  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L      83     L      83      8   16  133     3    5   18   37   63   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     Y      84     Y      84     11   16  133     3   11   21   42   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     P      85     P      85     11   16  133     4   11   21   41   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     G      86     G      86     11   16  133     3    9   21   41   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     I      87     I      87     11   16  133     7   10   21   41   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     T      88     T      88     11   16  133     7   10   21   38   61   77   86   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     S      89     S      89     11   16  133     7   10   21   41   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L      90     L      90     11   16  133     7   13   27   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     F      91     F      91     11   16  133     7   10   21   44   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     E      92     E      92     11   16  133     7   10   21   34   64   78   91   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     Q      93     Q      93     11   16  133     7   10   29   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L      94     L      94     11   16  133     6   10   29   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     P      95     P      95      3   16  133     3    4   26   40   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     S      96     S      96      4   16  133     3    4    8   24   42   69   86   98  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     E      97     E      97      5   16  133     4    4   13   27   51   68   86   96  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L      98     L      98      5   16  133     4    8   25   43   61   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     R      99     R      99      6   16  133     7   17   31   44   61   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L     100     L     100      6   16  133     8   16   28   44   61   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     G     101     G     101      6   17  133     5   16   30   44   61   77   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     I     102     I     102      6   17  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     V     103     V     103      6   17  133     9   19   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     T     104     T     104      6   17  133    10   19   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     S     105     S     105      4   17  133     7   10   19   38   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     Q     106     Q     106      4   17  133     3    8   29   43   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     R     107     R     107      9   17  133     4   10   13   26   59   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     R     108     R     108      9   17  133     7   10   20   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     N     109     N     109      9   17  133     7   10   20   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     E     110     E     110      9   17  133     7   10   16   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L     111     L     111      9   17  133     7   14   23   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     E     112     E     112      9   17  133     7   14   23   42   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     S     113     S     113      9   17  133     7   10   23   35   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     G     114     G     114      9   17  133     6   10   13   24   47   69   86   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     M     115     M     115      9   17  133     4   10   21   34   53   73   86   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     R     116     R     116      5   17  133     3    6   26   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     S     117     S     117      3   17  133     5   19   29   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     Y     118     Y     118      4   15  133     3   21   31   44   61   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     P     119     P     119      4   15  133     3   16   31   44   61   76   92   98  104  108  112  114  118  122  124  125  125  126  127  129 
LCS_GDT     F     120     F     120      6   15  133     8   21   31   44   61   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     M     121     M     121      6   15  133     4    4   13   20   48   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     M     122     M     122      6   15  133     4   14   27   44   61   77   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     R     123     R     123      6   15  133     4    5   27   43   61   74   87   97  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     M     124     M     124      6   15  133    11   20   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     125     A     125      6   15  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     V     126     V     126      4   15  133     3    8   27   43   62   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     T     127     T     127      3   15  133     3   18   29   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     I     128     I     128      4   15  133     3   17   30   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     S     129     S     129      6   15  133     4   15   27   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     130     A     130      6   15  133     4   10   20   42   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     D     131     D     131      6   15  133     4    7   19   34   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     D     132     D     132      6   15  133     4    8   20   35   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     T     133     T     133      6   15  133     3   13   22   34   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     P     134     P     134      6   15  133     3   10   19   35   58   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     K     135     K     135      3   15  133     5   19   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     R     136     R     136      3   15  133     3   10   21   41   61   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     K     137     K     137      4   16  133     4   10   30   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     P     138     P     138      4   18  133     3    5    6   14   35   48   73   85  102  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     D     139     D     139      4   18  133     3    4    8    9   10   16   41   48   82  102  111  114  118  122  124  125  125  126  128  129 
LCS_GDT     P     140     P     140     12   36  133     6   11   18   36   51   75   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L     141     L     141     12   36  133     9   18   30   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     P     142     P     142     12   36  133     9   14   30   44   63   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L     143     L     143     12   36  133     9   11   30   43   63   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L     144     L     144     12   36  133     9   18   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     T     145     T     145     12   36  133     9   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     146     A     146     12   36  133     9   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L     147     L     147     12   36  133     9   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     E     148     E     148     12   36  133     9   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     K     149     K     149     12   36  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     V     150     V     150     12   36  133     8   21   31   44   63   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     N     151     N     151     12   36  133     7   18   31   44   61   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     V     152     V     152     12   36  133     3    8   28   43   61   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     153     A     153      5   36  133     3    7   28   43   56   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     P     154     P     154      5   36  133     3    7   28   43   57   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     Q     155     Q     155      5   36  133     3   11   27   42   57   76   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     N     156     N     156      3   36  133     3    8   25   44   63   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     157     A     157      4   36  133     7   17   27   42   61   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     L     158     L     158      4   36  133     3   15   27   44   63   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     F     159     F     159      4   36  133     3    5   10   17   23   41   75   94  103  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     I     160     I     160      4   36  133     3    4    6   11   26   43   60   85   95  107  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     G     161     G     161     15   36  133     3   12   20   42   61   74   91   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     D     162     D     162     15   36  133     3   17   28   44   61   77   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     S     163     S     163     15   36  133    10   21   31   44   62   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     V     164     V     164     15   36  133    11   21   31   45   63   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     S     165     S     165     15   36  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     D     166     D     166     15   36  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     E     167     E     167     15   36  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     Q     168     Q     168     15   36  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     T     169     T     169     15   36  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     170     A     170     15   36  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     Q     171     Q     171     15   36  133    11   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     172     A     172     15   36  133    10   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     173     A     173     15   36  133    10   21   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     N     174     N     174     15   36  133     7   18   30   44   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     V     175     V     175     15   36  133     4   18   31   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     D     176     D     176      3   20  133     3    3    6   12   19   43   63   88  102  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     F     177     F     177      4   20  133     3    4    6   12   20   40   59   80  102  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     G     178     G     178      4   20  133     3    4    8   13   20   32   48   78   91  108  112  114  118  121  124  125  125  126  128  129 
LCS_GDT     L     179     L     179      4   20  133     3    4    8   12   30   51   72   88  103  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     180     A     180      5   20  133     4    8   21   44   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     V     181     V     181      5   20  133     4    7   14   26   43   63   85   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     W     182     W     182      5    9  133     4    4    6   20   51   72   86   98  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     G     183     G     183      5    9  133     4    4    6    7    9   11   48   67   88   96  104  114  117  122  124  125  125  126  128  129 
LCS_GDT     M     184     M     184      5    9  133     3   10   13   17   23   35   52   65   79   93  102  112  117  122  124  125  125  126  128  129 
LCS_GDT     D     185     D     185      4    9  133     3    4    4    7    8   11   14   25   36   44   66   75   95  103  116  119  123  126  128  129 
LCS_GDT     P     186     P     186      4    4  133     3    4    5    7    8   15   22   31   38   46   55   75   79   93  104  118  123  125  128  129 
LCS_GDT     N     187     N     187      5    6  133     4    5    5    7   13   13   19   25   36   41   51   58   85   93  116  119  123  126  128  129 
LCS_GDT     A     188     A     188      5    6  133     4    5    5    6    8    9   11   13   14   41   51   54   62   71   81  111  121  126  128  129 
LCS_GDT     D     189     D     189      5    6  133     4    5    8    9   10   13   66   79   97  105  111  114  117  122  124  125  125  126  128  129 
LCS_GDT     H     190     H     190      5    6  133     4    5    6   18   29   47   56   81   89  101  110  114  117  122  124  125  125  126  128  129 
LCS_GDT     Q     191     Q     191      5    6  133     4    6    6    7   16   22   42   52   58   81   93  107  114  120  121  125  125  126  128  129 
LCS_GDT     K     192     K     192      3    6  133     3   10   11   21   40   63   81   94  101  106  111  114  118  122  124  125  125  126  128  129 
LCS_GDT     V     193     V     193      4    7  133     3   15   29   45   64   78   92   99  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     A     194     A     194      4    7  133     3   12   15   20   35   58   75   92  104  108  112  114  118  122  124  125  125  126  128  129 
LCS_GDT     H     195     H     195      4    7  133     3    4    4    7   18   42   57   71   84  101  110  114  116  119  120  123  125  126  126  127 
LCS_GDT     R     196     R     196      4    7  133     3    4    6   15   32   44   61   76   87  101  111  114  116  119  120  123  124  126  126  127 
LCS_GDT     F     197     F     197      4    7  133     3    3    4    8   10   13   26   36   40   71   86   91  104  109  117  120  120  121  123  125 
LCS_GDT     Q     198     Q     198      4    7  133     3    3    6    8   10   13   15   36   40   47   53   61   86  102  106  110  117  121  121  122 
LCS_GDT     K     199     K     199      4    7  133     3    3    6    8   10   13   15   19   23   25   30   33   70   77   82   87   94   99  106  115 
LCS_GDT     P     200     P     200      6    8   22     3    4    7    8   10   13   15   19   23   25   53   61   70   77   82   87   92   98  106  115 
LCS_GDT     L     201     L     201      6    8   22     3    4    7    8    8    9   15   19   23   25   30   33   42   47   53   84   92   99  106  115 
LCS_GDT     D     202     D     202      6    8   22     3    4    7    8   15   20   24   28   29   47   58   68   83   93  105  108  116  118  121  122 
LCS_GDT     I     203     I     203      6    8   20     3    4    7    8    8   12   14   18   19   25   30   32   52   56   63   72   86   90  109  113 
LCS_GDT     L     204     L     204      6    8   17     3    4    7    8    8    8   15   18   19   25   30   32   38   42   51   54   61   80   98  103 
LCS_GDT     E     205     E     205      6    8   17     3    4    7    8   10   20   24   28   29   35   39   48   52   78   86   93  105  113  119  120 
LCS_GDT     L     206     L     206      6    8   17     3    4    7    8    9   12   14   18   19   25   27   29   38   42   47   56   59   80   98  107 
LCS_GDT     F     207     F     207      6    8   17     3    4    7    8    8    8   12   14   19   22   24   26   30   35   38   42   57   59   62   67 
LCS_AVERAGE  LCS_A:  35.90  (   5.12   13.43   89.15 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     21     31     45     64     78     92     99    104    108    112    114    118    122    124    125    125    126    128    129 
GDT PERCENT_CA   7.75  14.79  21.83  31.69  45.07  54.93  64.79  69.72  73.24  76.06  78.87  80.28  83.10  85.92  87.32  88.03  88.03  88.73  90.14  90.85
GDT RMS_LOCAL    0.27   0.68   1.00   1.47   1.86   2.07   2.33   2.49   2.62   2.76   2.90   2.98   3.22   3.48   3.58   3.68   3.68   3.73   4.23   4.23
GDT RMS_ALL_CA   6.92   6.99   6.97   6.95   7.11   7.02   6.96   6.98   6.95   6.93   6.95   6.94   7.00   7.09   7.11   7.15   7.15   7.06   7.38   7.37

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          9.375
LGA    T       2      T       2          7.824
LGA    Y       3      Y       3          5.203
LGA    Q       4      Q       4          2.117
LGA    A       5      A       5          1.474
LGA    L       6      L       6          1.326
LGA    M       7      M       7          2.025
LGA    F       8      F       8          2.177
LGA    D       9      D       9          1.961
LGA    I      10      I      10          2.117
LGA    D      11      D      11          2.739
LGA    G      12      G      12          1.957
LGA    T      13      T      13          2.239
LGA    L      14      L      14          3.799
LGA    T      15      T      15          6.760
LGA    N      16      N      16          7.299
LGA    E      82      E      82          5.529
LGA    L      83      L      83          2.502
LGA    Y      84      Y      84          2.388
LGA    P      85      P      85          2.760
LGA    G      86      G      86          2.641
LGA    I      87      I      87          2.514
LGA    T      88      T      88          3.642
LGA    S      89      S      89          2.763
LGA    L      90      L      90          1.257
LGA    F      91      F      91          2.378
LGA    E      92      E      92          3.271
LGA    Q      93      Q      93          2.035
LGA    L      94      L      94          2.059
LGA    P      95      P      95          2.266
LGA    S      96      S      96          4.576
LGA    E      97      E      97          4.927
LGA    L      98      L      98          2.939
LGA    R      99      R      99          3.612
LGA    L     100      L     100          3.828
LGA    G     101      G     101          3.198
LGA    I     102      I     102          1.299
LGA    V     103      V     103          0.368
LGA    T     104      T     104          0.392
LGA    S     105      S     105          3.202
LGA    Q     106      Q     106          3.235
LGA    R     107      R     107          3.441
LGA    R     108      R     108          2.230
LGA    N     109      N     109          2.017
LGA    E     110      E     110          2.182
LGA    L     111      L     111          2.103
LGA    E     112      E     112          2.230
LGA    S     113      S     113          2.718
LGA    G     114      G     114          3.978
LGA    M     115      M     115          3.974
LGA    R     116      R     116          1.430
LGA    S     117      S     117          1.338
LGA    Y     118      Y     118          3.706
LGA    P     119      P     119          4.449
LGA    F     120      F     120          3.620
LGA    M     121      M     121          3.235
LGA    M     122      M     122          3.258
LGA    R     123      R     123          4.797
LGA    M     124      M     124          1.768
LGA    A     125      A     125          1.584
LGA    V     126      V     126          2.828
LGA    T     127      T     127          1.320
LGA    I     128      I     128          1.270
LGA    S     129      S     129          1.820
LGA    A     130      A     130          2.465
LGA    D     131      D     131          3.596
LGA    D     132      D     132          3.347
LGA    T     133      T     133          2.857
LGA    P     134      P     134          3.734
LGA    K     135      K     135          0.773
LGA    R     136      R     136          2.983
LGA    K     137      K     137          2.225
LGA    P     138      P     138          5.104
LGA    D     139      D     139          6.216
LGA    P     140      P     140          3.092
LGA    L     141      L     141          1.626
LGA    P     142      P     142          1.992
LGA    L     143      L     143          2.321
LGA    L     144      L     144          1.779
LGA    T     145      T     145          1.228
LGA    A     146      A     146          1.671
LGA    L     147      L     147          1.845
LGA    E     148      E     148          1.449
LGA    K     149      K     149          1.310
LGA    V     150      V     150          2.209
LGA    N     151      N     151          3.510
LGA    V     152      V     152          3.557
LGA    A     153      A     153          3.826
LGA    P     154      P     154          3.354
LGA    Q     155      Q     155          3.497
LGA    N     156      N     156          2.638
LGA    A     157      A     157          3.552
LGA    L     158      L     158          2.794
LGA    F     159      F     159          5.457
LGA    I     160      I     160          6.196
LGA    G     161      G     161          3.850
LGA    D     162      D     162          3.001
LGA    S     163      S     163          2.060
LGA    V     164      V     164          1.425
LGA    S     165      S     165          1.271
LGA    D     166      D     166          0.788
LGA    E     167      E     167          0.837
LGA    Q     168      Q     168          0.996
LGA    T     169      T     169          0.775
LGA    A     170      A     170          0.401
LGA    Q     171      Q     171          0.632
LGA    A     172      A     172          1.371
LGA    A     173      A     173          1.392
LGA    N     174      N     174          2.235
LGA    V     175      V     175          1.770
LGA    D     176      D     176          5.318
LGA    F     177      F     177          5.352
LGA    G     178      G     178          6.077
LGA    L     179      L     179          4.471
LGA    A     180      A     180          1.804
LGA    V     181      V     181          3.544
LGA    W     182      W     182          4.663
LGA    G     183      G     183          8.811
LGA    M     184      M     184          9.680
LGA    D     185      D     185         13.853
LGA    P     186      P     186         15.551
LGA    N     187      N     187         15.262
LGA    A     188      A     188         14.488
LGA    D     189      D     189          7.994
LGA    H     190      H     190          8.751
LGA    Q     191      Q     191         11.323
LGA    K     192      K     192          6.312
LGA    V     193      V     193          1.883
LGA    A     194      A     194          5.515
LGA    H     195      H     195          8.268
LGA    R     196      R     196          8.234
LGA    F     197      F     197         11.655
LGA    Q     198      Q     198         14.936
LGA    K     199      K     199         18.741
LGA    P     200      P     200         17.830
LGA    L     201      L     201         18.601
LGA    D     202      D     202         15.582
LGA    I     203      I     203         19.325
LGA    L     204      L     204         22.697
LGA    E     205      E     205         18.935
LGA    L     206      L     206         22.023
LGA    F     207      F     207         27.830

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  142  142    4.0     99    2.49    51.056    45.483     3.829

LGA_LOCAL      RMSD =  2.485  Number of atoms =   99  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.986  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  6.877  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.662443 * X  +  -0.747789 * Y  +  -0.044497 * Z  +  25.069984
  Y_new =   0.647664 * X  +  -0.601569 * Y  +   0.467597 * Z  +  21.101561
  Z_new =  -0.376432 * X  +   0.280937 * Y  +   0.882821 * Z  +  20.662769 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.308093   -2.833499  [ DEG:    17.6524   -162.3475 ]
  Theta =   0.385942    2.755651  [ DEG:    22.1128    157.8872 ]
  Phi   =   2.367475   -0.774117  [ DEG:   135.6463    -44.3537 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0324TS393_5-D1                               
REMARK     2: T0324_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0324TS393_5-D1.T0324_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  142  142   4.0   99   2.49  45.483     6.88
REMARK  ---------------------------------------------------------- 
MOLECULE T0324TS393_5-D1
PFRMAT TS
TARGET T0324
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      35.842  33.915  45.820  1.00 25.00           C
ATOM      2  CA  THR     2      33.339  32.874  43.165  1.00 25.00           C
ATOM      3  CA  TYR     3      33.602  30.898  39.982  1.00 25.00           C
ATOM      4  CA  GLN     4      31.079  32.149  37.363  1.00 25.00           C
ATOM      5  CA  ALA     5      29.488  28.917  36.062  1.00 25.00           C
ATOM      6  CA  LEU     6      29.203  27.456  32.515  1.00 25.00           C
ATOM      7  CA  MET     7      27.558  26.757  29.189  1.00 25.00           C
ATOM      8  CA  PHE     8      27.516  26.177  25.373  1.00 25.00           C
ATOM      9  CA  ASP     9      24.385  23.970  25.568  1.00 25.00           C
ATOM     10  CA  ILE    10      25.911  22.048  22.735  1.00 25.00           C
ATOM     11  CA  ASP    11      23.990  23.086  19.567  1.00 25.00           C
ATOM     12  CA  GLY    12      27.051  24.989  18.353  1.00 25.00           C
ATOM     13  CA  THR    13      29.820  25.329  20.941  1.00 25.00           C
ATOM     14  CA  LEU    14      31.513  23.547  23.768  1.00 25.00           C
ATOM     15  CA  THR    15      33.013  20.151  23.028  1.00 25.00           C
ATOM     16  CA  ASN    16      32.823  19.565  19.247  1.00 25.00           C
ATOM     82  CA  GLU    82      39.222  22.394  12.058  1.00 25.00           C
ATOM     83  CA  LEU    83      37.330  21.645  15.272  1.00 25.00           C
ATOM     84  CA  TYR    84      36.269  25.122  16.482  1.00 25.00           C
ATOM     85  CA  PRO    85      39.769  26.628  16.423  1.00 25.00           C
ATOM     86  CA  GLY    86      39.176  27.476  20.054  1.00 25.00           C
ATOM     87  CA  ILE    87      37.356  24.668  21.965  1.00 25.00           C
ATOM     88  CA  THR    88      40.022  23.244  24.318  1.00 25.00           C
ATOM     89  CA  SER    89      41.966  26.539  24.149  1.00 25.00           C
ATOM     90  CA  LEU    90      38.771  28.494  24.950  1.00 25.00           C
ATOM     91  CA  PHE    91      38.082  26.194  27.934  1.00 25.00           C
ATOM     92  CA  GLU    92      41.662  26.713  29.192  1.00 25.00           C
ATOM     93  CA  GLN    93      41.254  30.507  28.864  1.00 25.00           C
ATOM     94  CA  LEU    94      37.962  30.345  30.815  1.00 25.00           C
ATOM     95  CA  PRO    95      39.660  28.282  33.558  1.00 25.00           C
ATOM     96  CA  SER    96      40.315  31.396  35.630  1.00 25.00           C
ATOM     97  CA  GLU    97      36.521  31.455  35.938  1.00 25.00           C
ATOM     98  CA  LEU    98      34.402  28.832  34.068  1.00 25.00           C
ATOM     99  CA  ARG    99      34.383  25.195  32.934  1.00 25.00           C
ATOM    100  CA  LEU   100      33.603  24.984  29.235  1.00 25.00           C
ATOM    101  CA  GLY   101      30.566  22.790  28.661  1.00 25.00           C
ATOM    102  CA  ILE   102      27.734  20.466  27.684  1.00 25.00           C
ATOM    103  CA  VAL   103      24.239  20.309  29.121  1.00 25.00           C
ATOM    104  CA  THR   104      23.269  18.373  25.981  1.00 25.00           C
ATOM    105  CA  SER   105      20.818  19.923  23.562  1.00 25.00           C
ATOM    106  CA  GLN   106      20.167  16.397  22.155  1.00 25.00           C
ATOM    107  CA  ARG   107      22.832  14.019  23.424  1.00 25.00           C
ATOM    108  CA  ARG   108      24.066  11.525  26.074  1.00 25.00           C
ATOM    109  CA  ASN   109      25.959   8.950  23.965  1.00 25.00           C
ATOM    110  CA  GLU   110      26.976  11.689  21.489  1.00 25.00           C
ATOM    111  CA  LEU   111      28.204  13.880  24.379  1.00 25.00           C
ATOM    112  CA  GLU   112      30.234  10.947  25.774  1.00 25.00           C
ATOM    113  CA  SER   113      31.775  10.341  22.321  1.00 25.00           C
ATOM    114  CA  GLY   114      32.683  14.051  22.048  1.00 25.00           C
ATOM    115  CA  MET   115      34.301  13.935  25.517  1.00 25.00           C
ATOM    116  CA  ARG   116      36.305  10.832  24.507  1.00 25.00           C
ATOM    117  CA  SER   117      37.466  12.593  21.310  1.00 25.00           C
ATOM    118  CA  TYR   118      37.535  15.266  18.548  1.00 25.00           C
ATOM    119  CA  PRO   119      40.678  16.502  20.227  1.00 25.00           C
ATOM    120  CA  PHE   120      38.320  18.244  22.694  1.00 25.00           C
ATOM    121  CA  MET   121      39.275  16.046  25.607  1.00 25.00           C
ATOM    122  CA  MET   122      39.660  18.914  28.049  1.00 25.00           C
ATOM    123  CA  ARG   123      36.484  20.810  27.090  1.00 25.00           C
ATOM    124  CA  MET   124      34.395  19.564  30.056  1.00 25.00           C
ATOM    125  CA  ALA   125      33.658  18.927  33.761  1.00 25.00           C
ATOM    126  CA  VAL   126      30.117  20.161  33.098  1.00 25.00           C
ATOM    127  CA  THR   127      29.525  17.038  30.981  1.00 25.00           C
ATOM    128  CA  ILE   128      25.860  15.826  31.040  1.00 25.00           C
ATOM    129  CA  SER   129      22.490  14.407  29.931  1.00 25.00           C
ATOM    130  CA  ALA   130      19.790  15.702  27.556  1.00 25.00           C
ATOM    131  CA  ASP   131      17.787  12.764  28.908  1.00 25.00           C
ATOM    132  CA  ASP   132      17.691  12.584  32.706  1.00 25.00           C
ATOM    133  CA  THR   133      15.303  14.031  35.244  1.00 25.00           C
ATOM    134  CA  PRO   134      12.064  15.554  34.092  1.00 25.00           C
ATOM    135  CA  LYS   135      13.590  16.241  30.622  1.00 25.00           C
ATOM    136  CA  ARG   136      11.810  18.262  27.996  1.00 25.00           C
ATOM    137  CA  LYS   137      13.402  21.477  26.746  1.00 25.00           C
ATOM    138  CA  PRO   138      16.593  19.407  26.410  1.00 25.00           C
ATOM    139  CA  ASP   139      18.500  22.170  28.051  1.00 25.00           C
ATOM    140  CA  PRO   140      16.262  21.640  31.050  1.00 25.00           C
ATOM    141  CA  LEU   141      16.261  19.160  33.969  1.00 25.00           C
ATOM    142  CA  PRO   142      19.336  17.404  32.510  1.00 25.00           C
ATOM    143  CA  LEU   143      21.119  20.773  32.148  1.00 25.00           C
ATOM    144  CA  LEU   144      20.274  21.639  35.781  1.00 25.00           C
ATOM    145  CA  THR   145      21.633  18.248  36.931  1.00 25.00           C
ATOM    146  CA  ALA   146      24.856  18.840  34.948  1.00 25.00           C
ATOM    147  CA  LEU   147      25.227  22.305  36.536  1.00 25.00           C
ATOM    148  CA  GLU   148      24.725  20.790  40.017  1.00 25.00           C
ATOM    149  CA  LYS   149      27.378  18.130  39.269  1.00 25.00           C
ATOM    150  CA  VAL   150      29.808  20.849  38.097  1.00 25.00           C
ATOM    151  CA  ASN   151      30.972  22.364  41.360  1.00 25.00           C
ATOM    152  CA  VAL   152      30.883  26.067  40.367  1.00 25.00           C
ATOM    153  CA  ALA   153      27.253  26.020  41.466  1.00 25.00           C
ATOM    154  CA  PRO   154      25.209  27.886  38.857  1.00 25.00           C
ATOM    155  CA  GLN   155      26.099  31.378  40.156  1.00 25.00           C
ATOM    156  CA  ASN   156      26.141  32.727  36.572  1.00 25.00           C
ATOM    157  CA  ALA   157      27.341  32.446  33.031  1.00 25.00           C
ATOM    158  CA  LEU   158      25.414  32.356  29.808  1.00 25.00           C
ATOM    159  CA  PHE   159      22.620  33.265  27.394  1.00 25.00           C
ATOM    160  CA  ILE   160      21.649  32.370  23.831  1.00 25.00           C
ATOM    161  CA  GLY   161      21.974  29.871  20.967  1.00 25.00           C
ATOM    162  CA  ASP   162      20.862  27.021  18.804  1.00 25.00           C
ATOM    163  CA  SER   163      17.399  26.866  20.346  1.00 25.00           C
ATOM    164  CA  VAL   164      14.561  28.927  21.911  1.00 25.00           C
ATOM    165  CA  SER   165      14.566  25.834  24.170  1.00 25.00           C
ATOM    166  CA  ASP   166      18.082  26.714  25.407  1.00 25.00           C
ATOM    167  CA  GLU   167      16.951  30.297  26.149  1.00 25.00           C
ATOM    168  CA  GLN   168      13.924  28.968  28.082  1.00 25.00           C
ATOM    169  CA  THR   169      16.202  26.642  30.098  1.00 25.00           C
ATOM    170  CA  ALA   170      18.533  29.575  30.893  1.00 25.00           C
ATOM    171  CA  GLN   171      15.541  31.677  32.030  1.00 25.00           C
ATOM    172  CA  ALA   172      14.346  28.810  34.269  1.00 25.00           C
ATOM    173  CA  ALA   173      17.857  28.423  35.793  1.00 25.00           C
ATOM    174  CA  ASN   174      19.510  31.721  36.715  1.00 25.00           C
ATOM    175  CA  VAL   175      21.913  32.517  33.880  1.00 25.00           C
ATOM    176  CA  ASP   176      22.181  28.781  33.412  1.00 25.00           C
ATOM    177  CA  PHE   177      22.665  27.874  29.759  1.00 25.00           C
ATOM    178  CA  GLY   178      22.677  28.380  25.991  1.00 25.00           C
ATOM    179  CA  LEU   179      25.942  30.153  25.240  1.00 25.00           C
ATOM    180  CA  ALA   180      26.893  30.578  21.592  1.00 25.00           C
ATOM    181  CA  VAL   181      27.831  30.834  17.869  1.00 25.00           C
ATOM    182  CA  TRP   182      25.800  34.043  18.062  1.00 25.00           C
ATOM    183  CA  GLY   183      27.818  35.795  20.784  1.00 25.00           C
ATOM    184  CA  MET   184      31.010  34.550  19.173  1.00 25.00           C
ATOM    185  CA  ASP   185      31.590  38.218  18.229  1.00 25.00           C
ATOM    186  CA  PRO   186      29.745  41.129  19.837  1.00 25.00           C
ATOM    187  CA  ASN   187      26.849  43.000  18.252  1.00 25.00           C
ATOM    188  CA  ALA   188      25.152  45.097  20.970  1.00 25.00           C
ATOM    189  CA  ASP   189      22.189  42.671  21.025  1.00 25.00           C
ATOM    190  CA  HIS   190      24.590  39.706  21.349  1.00 25.00           C
ATOM    191  CA  GLN   191      26.394  41.450  24.241  1.00 25.00           C
ATOM    192  CA  LYS   192      23.041  42.099  25.974  1.00 25.00           C
ATOM    193  CA  VAL   193      21.911  38.679  26.984  1.00 25.00           C
ATOM    194  CA  ALA   194      18.380  40.004  26.605  1.00 25.00           C
ATOM    195  CA  HIS   195      18.628  38.864  23.023  1.00 25.00           C
ATOM    196  CA  ARG   196      19.148  37.975  19.296  1.00 25.00           C
ATOM    197  CA  PHE   197      18.464  34.290  19.725  1.00 25.00           C
ATOM    198  CA  GLN   198      16.156  33.639  16.844  1.00 25.00           C
ATOM    199  CA  LYS   199      15.434  31.240  13.922  1.00 25.00           C
ATOM    200  CA  PRO   200      18.574  29.167  13.278  1.00 25.00           C
ATOM    201  CA  LEU   201      20.159  31.494  15.873  1.00 25.00           C
ATOM    202  CA  ASP   202      23.626  30.834  14.385  1.00 25.00           C
ATOM    203  CA  ILE   203      22.294  31.605  10.878  1.00 25.00           C
ATOM    204  CA  LEU   204      20.747  34.867  12.157  1.00 25.00           C
ATOM    205  CA  GLU   205      24.073  35.833  13.791  1.00 25.00           C
ATOM    206  CA  LEU   206      25.921  35.105  10.517  1.00 25.00           C
ATOM    207  CA  PHE   207      23.410  37.262   8.592  1.00 25.00           C
TER
END
