
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  142 (  142),  selected  142 , name T0324TS393_4-D1
# Molecule2: number of CA atoms  142 ( 1080),  selected  142 , name T0324_D1.pdb
# PARAMETERS: T0324TS393_4-D1.T0324_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   141         1 - 206         4.76     5.10
  LONGEST_CONTINUOUS_SEGMENT:   141         2 - 207         4.98     5.10
  LCS_AVERAGE:     99.30

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25       155 - 179         1.99     5.91
  LONGEST_CONTINUOUS_SEGMENT:    25       156 - 180         1.99     5.92
  LCS_AVERAGE:     11.56

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       135 - 150         0.84     9.10
  LCS_AVERAGE:      5.61

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     M       1     M       1      3    6  141     2    3    6    8   13   18   21   44   54   70   95  108  115  120  126  130  133  133  136  137 
LCS_GDT     T       2     T       2      3    6  141     2    3    4    5    8   15   30   44   54   73   95  111  116  120  126  132  133  133  136  137 
LCS_GDT     Y       3     Y       3      3   14  141     2    3    4    4   15   25   41   60   79   93  106  116  124  130  130  132  134  135  136  137 
LCS_GDT     Q       4     Q       4      4   14  141     2    8   12   16   28   45   66   87  103  114  122  127  129  130  133  134  135  135  136  137 
LCS_GDT     A       5     A       5      4   14  141     3   14   22   33   51   68   86  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L       6     L       6      4   14  141     3   14   22   34   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     M       7     M       7      4   14  141    10   14   22   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     F       8     F       8      4   14  141     3    7   11   21   47   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     D       9     D       9      6   14  141     3    7   12   37   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     I      10     I      10      6   14  141     3   12   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     D      11     D      11      6   14  141     3    9   12   28   52   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     G      12     G      12      6   14  141     3    8    9   17   29   46   75   95  111  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     T      13     T      13      6   14  141     3    6   10   22   34   56   75   97  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L      14     L      14      6   14  141     3    6   11   16   33   56   74   97  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     T      15     T      15      5   14  141     3    4    5   11   31   47   70   87  102  115  122  127  129  130  133  134  135  135  136  137 
LCS_GDT     N      16     N      16      5   14  141     3    4    9   16   34   47   70   87  103  114  122  127  129  130  133  134  135  135  136  137 
LCS_GDT     E      82     E      82      6   14  141     3    3    6    6   22   33   55   77   96  105  118  124  129  130  131  134  135  135  136  137 
LCS_GDT     L      83     L      83      9   16  141     3    7   16   37   50   66   87  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     Y      84     Y      84      9   16  141     3    7   16   37   53   67   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     P      85     P      85     10   16  141     3    6   16   37   53   67   87  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     G      86     G      86     10   16  141    10   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     I      87     I      87     10   16  141    10   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     T      88     T      88     10   16  141    10   14   22   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     S      89     S      89     10   16  141    10   14   22   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L      90     L      90     10   16  141    10   14   22   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     F      91     F      91     10   16  141    10   14   22   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     E      92     E      92     10   16  141    10   14   22   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     Q      93     Q      93     10   16  141    10   14   22   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L      94     L      94     10   16  141     6   14   22   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     P      95     P      95      4   19  141     3    4   21   34   40   61   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     S      96     S      96      4   19  141     3    9   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     E      97     E      97      4   19  141     4   10   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L      98     L      98      4   19  141     3   10   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     R      99     R      99      5   19  141     4    8   15   31   47   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L     100     L     100      5   19  141     4    8   13   31   46   66   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     G     101     G     101      5   19  141     4    8   16   31   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     I     102     I     102      5   19  141     4   10   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     V     103     V     103      5   19  141     4    7   16   32   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     T     104     T     104     11   19  141     3   10   15   29   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     S     105     S     105     11   19  141     3   10   16   32   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     Q     106     Q     106     11   19  141     3    9   16   32   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     R     107     R     107     11   19  141     3    9   10   15   37   60   81  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     R     108     R     108     11   19  141     6   10   12   20   45   66   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     N     109     N     109     11   19  141     6   10   12   20   46   66   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     E     110     E     110     11   19  141     6   10   12   29   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L     111     L     111     11   19  141     6   10   12   20   49   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     E     112     E     112     11   19  141     6   10   12   20   36   65   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     S     113     S     113     11   19  141     6   10   12   20   36   65   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     G     114     G     114     11   16  141     5   10   12   19   38   57   78   98  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     M     115     M     115     10   16  141     4    9   10   15   36   56   74   92  108  118  122  127  129  130  133  134  135  135  136  137 
LCS_GDT     R     116     R     116      5   15  141     3    4   16   31   53   67   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     S     117     S     117      4   15  141     3    9   12   26   53   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     Y     118     Y     118      4   10  141     3    5   11   30   47   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     P     119     P     119      4   10  141     3    8   17   30   51   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     F     120     F     120      6   10  141     4    5   11   30   47   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     M     121     M     121      6   10  141     3    4   10   30   42   61   87  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     M     122     M     122      6   10  141     4   12   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     R     123     R     123      6   10  141     4    7   16   28   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     M     124     M     124      6   10  141     4    7   22   28   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     125     A     125      6   10  141     3   12   23   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     V     126     V     126      4    7  141     3    6   14   27   44   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     T     127     T     127      4    7  141     1    5   12   27   48   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     I     128     I     128      4    7  141     2    4   13   24   52   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     S     129     S     129      4    7  141     1    3    5   13   28   34   55   84  107  117  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     130     A     130      4    6  141     3    4   10   20   33   62   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     D     131     D     131      4    6  141     3    4    5   15   30   54   82  105  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     D     132     D     132      4   21  141     3    4   15   30   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     T     133     T     133      4   21  141     3    8   17   32   53   64   84  102  111  117  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     P     134     P     134      3   21  141     3    9   21   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     K     135     K     135     16   21  141     5   14   24   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     R     136     R     136     16   21  141     3   13   24   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     K     137     K     137     16   21  141     3   13   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     P     138     P     138     16   21  141     3   13   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     D     139     D     139     16   21  141     6   14   24   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     P     140     P     140     16   21  141     6   13   25   40   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L     141     L     141     16   21  141     8   14   24   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     P     142     P     142     16   21  141     8   13   21   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L     143     L     143     16   21  141     8   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L     144     L     144     16   21  141     8   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     T     145     T     145     16   21  141     8   13   23   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     146     A     146     16   21  141     8   14   24   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L     147     L     147     16   21  141     8   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     E     148     E     148     16   21  141     8   14   24   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     K     149     K     149     16   21  141     8   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     V     150     V     150     16   21  141     8   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     N     151     N     151     15   21  141     4    8   19   32   44   64   90  105  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     V     152     V     152     15   21  141     4    8   21   30   44   61   83  103  111  117  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     153     A     153      7   21  141     4    6    9   11   21   36   54   68   81   96  112  122  126  129  133  134  135  135  136  137 
LCS_GDT     P     154     P     154      7   21  141     4    6    9   11   16   20   33   57   80   92  107  122  126  129  133  134  135  135  136  137 
LCS_GDT     Q     155     Q     155      4   25  141     4   10   24   34   44   64   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     N     156     N     156      4   25  141     4    4   15   29   44   66   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     157     A     157      6   25  141     4    7   17   30   47   66   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L     158     L     158      6   25  141     3    5   14   25   42   66   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     F     159     F     159      6   25  141     3    6   15   33   52   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     I     160     I     160      7   25  141     4   10   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     G     161     G     161      7   25  141     4   12   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     D     162     D     162     12   25  141    10   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     S     163     S     163     12   25  141    10   14   24   37   53   66   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     V     164     V     164     12   25  141    10   12   24   37   53   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     S     165     S     165     12   25  141    10   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     D     166     D     166     12   25  141    10   12   24   40   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     E     167     E     167     12   25  141    10   14   24   34   50   66   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     Q     168     Q     168     12   25  141    10   14   24   37   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     T     169     T     169     12   25  141    10   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     170     A     170     12   25  141    10   14   24   34   48   64   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     Q     171     Q     171     12   25  141    10   14   24   34   44   61   87  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     172     A     172     12   25  141    10   14   24   34   52   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     173     A     173     12   25  141     3   11   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     N     174     N     174     12   25  141     3    8   17   38   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     V     175     V     175      7   25  141     3   10   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     D     176     D     176      7   25  141     5   13   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     F     177     F     177      7   25  141     4    5   18   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     G     178     G     178      7   25  141     4   14   25   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L     179     L     179      7   25  141     4   12   22   41   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     180     A     180      7   25  141     4    7   22   43   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     V     181     V     181      4   23  141     4    5   11   37   53   67   88  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     W     182     W     182      4   11  141     4    7   11   25   48   67   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     G     183     G     183      4    9  141     4    7   16   31   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     M     184     M     184      4    5  141     4    4    6   14   21   39   67   85  104  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     D     185     D     185      4    8  141     4    7   16   34   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     P     186     P     186      6    8  141     5    7   17   34   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     N     187     N     187      6    8  141     5    6    7   17   32   58   78   93  109  117  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     188     A     188      6    8  141     5    6    6    7    7    9   14   37   86   98  115  125  127  130  133  134  135  135  136  137 
LCS_GDT     D     189     D     189      6    8  141     5    6    8   20   31   47   65   87  108  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     H     190     H     190      6    8  141     5    6    6   25   49   66   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     Q     191     Q     191      6    8  141     4    6    9   26   47   66   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     K     192     K     192      4    9  141     4    5   22   38   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     V     193     V     193      4    9  141     4    6   22   40   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     A     194     A     194      4    9  141     3    5   12   27   44   66   86  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     H     195     H     195      4    9  141     3    5   14   27   41   66   85  105  111  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     R     196     R     196      3    9  141     1    7   16   31   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     F     197     F     197      4    9  141     3    8   16   31   53   68   90  106  112  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     Q     198     Q     198      4    9  141     3    5   12   25   43   62   80   93  109  118  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     K     199     K     199      4    9  141     3    4    9   14   27   40   53   76   93  105  122  125  129  130  133  134  135  135  136  137 
LCS_GDT     P     200     P     200      6    9  141     3    5   12   20   30   50   64   86   96  117  123  127  129  130  133  134  135  135  136  137 
LCS_GDT     L     201     L     201      6    8  141     3    4    8   15   30   46   56   70   87  105  115  122  127  130  133  134  135  135  136  137 
LCS_GDT     D     202     D     202      6    8  141     3    5   11   18   30   45   61   88  100  110  118  123  127  129  133  134  135  135  136  137 
LCS_GDT     I     203     I     203      6    8  141     3    4    7   10   16   24   30   44   79   86   96  110  120  128  131  134  135  135  136  136 
LCS_GDT     L     204     L     204      6    8  141     3    4    7    9    9   13   17   18   22   28   32   48   58   87   91  100  127  130  132  135 
LCS_GDT     E     205     E     205      6    8  141     3    4    7    9   14   20   26   28   29   38   45   55   77   87   91   99  108  119  129  131 
LCS_GDT     L     206     L     206      6    8  141     3    4    7    9    9   10   11   17   21   25   31   55   62   70   73   76   88   93  100  113 
LCS_GDT     F     207     F     207      6    8  141     3    4    7    9    9   10   11   12   14   14   14   16   18   20   20   40   67   72   76   80 
LCS_AVERAGE  LCS_A:  38.82  (   5.61   11.56   99.30 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     14     25     43     53     68     90    106    112    118    123    127    129    130    133    134    135    135    136    137 
GDT PERCENT_CA   7.04   9.86  17.61  30.28  37.32  47.89  63.38  74.65  78.87  83.10  86.62  89.44  90.85  91.55  93.66  94.37  95.07  95.07  95.77  96.48
GDT RMS_LOCAL    0.19   0.56   1.21   1.55   1.72   2.07   2.52   2.77   2.90   3.05   3.19   3.32   3.43   3.48   3.65   3.72   3.78   3.77   3.85   4.01
GDT RMS_ALL_CA   9.88   5.49   5.23   5.16   5.18   5.20   5.13   5.14   5.15   5.13   5.14   5.15   5.17   5.14   5.12   5.11   5.12   5.14   5.13   5.19

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         13.177
LGA    T       2      T       2         12.552
LGA    Y       3      Y       3          9.767
LGA    Q       4      Q       4          6.690
LGA    A       5      A       5          3.565
LGA    L       6      L       6          3.008
LGA    M       7      M       7          2.167
LGA    F       8      F       8          3.356
LGA    D       9      D       9          2.301
LGA    I      10      I      10          0.882
LGA    D      11      D      11          2.971
LGA    G      12      G      12          5.262
LGA    T      13      T      13          5.020
LGA    L      14      L      14          4.877
LGA    T      15      T      15          5.986
LGA    N      16      N      16          6.145
LGA    E      82      E      82          8.257
LGA    L      83      L      83          3.931
LGA    Y      84      Y      84          3.479
LGA    P      85      P      85          3.596
LGA    G      86      G      86          1.334
LGA    I      87      I      87          1.153
LGA    T      88      T      88          1.691
LGA    S      89      S      89          1.947
LGA    L      90      L      90          1.889
LGA    F      91      F      91          1.686
LGA    E      92      E      92          2.197
LGA    Q      93      Q      93          2.444
LGA    L      94      L      94          2.242
LGA    P      95      P      95          3.888
LGA    S      96      S      96          1.624
LGA    E      97      E      97          1.265
LGA    L      98      L      98          1.572
LGA    R      99      R      99          3.205
LGA    L     100      L     100          3.728
LGA    G     101      G     101          3.120
LGA    I     102      I     102          1.784
LGA    V     103      V     103          3.561
LGA    T     104      T     104          2.574
LGA    S     105      S     105          2.877
LGA    Q     106      Q     106          3.175
LGA    R     107      R     107          3.840
LGA    R     108      R     108          3.091
LGA    N     109      N     109          2.629
LGA    E     110      E     110          2.054
LGA    L     111      L     111          2.426
LGA    E     112      E     112          3.537
LGA    S     113      S     113          3.550
LGA    G     114      G     114          4.611
LGA    M     115      M     115          5.381
LGA    R     116      R     116          3.149
LGA    S     117      S     117          2.259
LGA    Y     118      Y     118          2.675
LGA    P     119      P     119          2.870
LGA    F     120      F     120          2.882
LGA    M     121      M     121          3.907
LGA    M     122      M     122          1.451
LGA    R     123      R     123          3.011
LGA    M     124      M     124          2.692
LGA    A     125      A     125          1.939
LGA    V     126      V     126          3.447
LGA    T     127      T     127          2.832
LGA    I     128      I     128          2.635
LGA    S     129      S     129          5.176
LGA    A     130      A     130          3.357
LGA    D     131      D     131          4.187
LGA    D     132      D     132          1.952
LGA    T     133      T     133          4.987
LGA    P     134      P     134          2.131
LGA    K     135      K     135          1.540
LGA    R     136      R     136          2.000
LGA    K     137      K     137          3.173
LGA    P     138      P     138          3.244
LGA    D     139      D     139          1.739
LGA    P     140      P     140          2.912
LGA    L     141      L     141          0.741
LGA    P     142      P     142          2.498
LGA    L     143      L     143          2.824
LGA    L     144      L     144          1.634
LGA    T     145      T     145          1.338
LGA    A     146      A     146          2.284
LGA    L     147      L     147          2.315
LGA    E     148      E     148          1.581
LGA    K     149      K     149          1.149
LGA    V     150      V     150          2.405
LGA    N     151      N     151          4.630
LGA    V     152      V     152          5.101
LGA    A     153      A     153          8.047
LGA    P     154      P     154          8.165
LGA    Q     155      Q     155          4.094
LGA    N     156      N     156          3.885
LGA    A     157      A     157          3.515
LGA    L     158      L     158          3.874
LGA    F     159      F     159          2.744
LGA    I     160      I     160          1.603
LGA    G     161      G     161          1.520
LGA    D     162      D     162          1.769
LGA    S     163      S     163          3.657
LGA    V     164      V     164          2.961
LGA    S     165      S     165          1.879
LGA    D     166      D     166          3.308
LGA    E     167      E     167          3.773
LGA    Q     168      Q     168          2.613
LGA    T     169      T     169          2.221
LGA    A     170      A     170          3.873
LGA    Q     171      Q     171          3.981
LGA    A     172      A     172          2.904
LGA    A     173      A     173          2.284
LGA    N     174      N     174          3.636
LGA    V     175      V     175          1.851
LGA    D     176      D     176          1.406
LGA    F     177      F     177          2.399
LGA    G     178      G     178          1.907
LGA    L     179      L     179          3.187
LGA    A     180      A     180          2.541
LGA    V     181      V     181          3.267
LGA    W     182      W     182          3.623
LGA    G     183      G     183          4.025
LGA    M     184      M     184          5.972
LGA    D     185      D     185          3.636
LGA    P     186      P     186          3.623
LGA    N     187      N     187          5.345
LGA    A     188      A     188          7.316
LGA    D     189      D     189          6.242
LGA    H     190      H     190          3.638
LGA    Q     191      Q     191          3.086
LGA    K     192      K     192          3.860
LGA    V     193      V     193          3.355
LGA    A     194      A     194          4.000
LGA    H     195      H     195          4.857
LGA    R     196      R     196          3.903
LGA    F     197      F     197          3.943
LGA    Q     198      Q     198          6.115
LGA    K     199      K     199          8.119
LGA    P     200      P     200          6.879
LGA    L     201      L     201          8.253
LGA    D     202      D     202          7.290
LGA    I     203      I     203          9.683
LGA    L     204      L     204         15.099
LGA    E     205      E     205         16.640
LGA    L     206      L     206         19.273
LGA    F     207      F     207         22.920

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  142  142    4.0    106    2.77    52.289    45.465     3.693

LGA_LOCAL      RMSD =  2.771  Number of atoms =  106  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.182  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  5.093  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.358459 * X  +  -0.930879 * Y  +   0.070512 * Z  +  26.239851
  Y_new =   0.416170 * X  +   0.226954 * Y  +   0.880508 * Z  +  20.988045
  Z_new =  -0.835649 * X  +  -0.286281 * Y  +   0.468758 * Z  +  20.661154 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.548267    2.593325  [ DEG:   -31.4134    148.5866 ]
  Theta =   0.989313    2.152279  [ DEG:    56.6835    123.3165 ]
  Phi   =   0.859762   -2.281831  [ DEG:    49.2607   -130.7393 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0324TS393_4-D1                               
REMARK     2: T0324_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0324TS393_4-D1.T0324_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  142  142   4.0  106   2.77  45.465     5.09
REMARK  ---------------------------------------------------------- 
MOLECULE T0324TS393_4-D1
PFRMAT TS
TARGET T0324
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1      32.885  30.992  49.164  1.00 25.00           C
ATOM      2  CA  THR     2      30.738  29.392  46.474  1.00 25.00           C
ATOM      3  CA  TYR     3      28.646  27.654  43.801  1.00 25.00           C
ATOM      4  CA  GLN     4      27.082  26.555  40.521  1.00 25.00           C
ATOM      5  CA  ALA     5      27.758  26.441  36.756  1.00 25.00           C
ATOM      6  CA  LEU     6      28.318  25.998  33.084  1.00 25.00           C
ATOM      7  CA  MET     7      26.138  24.282  30.555  1.00 25.00           C
ATOM      8  CA  PHE     8      24.682  24.810  27.099  1.00 25.00           C
ATOM      9  CA  ASP     9      27.726  24.021  24.963  1.00 25.00           C
ATOM     10  CA  ILE    10      28.126  21.542  22.092  1.00 25.00           C
ATOM     11  CA  ASP    11      27.566  23.541  18.926  1.00 25.00           C
ATOM     12  CA  GLY    12      29.710  26.489  20.009  1.00 25.00           C
ATOM     13  CA  THR    13      32.018  25.261  22.723  1.00 25.00           C
ATOM     14  CA  LEU    14      32.724  21.860  24.234  1.00 25.00           C
ATOM     15  CA  THR    15      32.572  18.944  21.841  1.00 25.00           C
ATOM     16  CA  ASN    16      32.673  20.219  18.222  1.00 25.00           C
ATOM     82  CA  GLU    82      41.687  20.520  17.250  1.00 25.00           C
ATOM     83  CA  LEU    83      38.080  21.371  18.238  1.00 25.00           C
ATOM     84  CA  TYR    84      37.333  24.717  16.724  1.00 25.00           C
ATOM     85  CA  PRO    85      40.390  27.016  17.141  1.00 25.00           C
ATOM     86  CA  GLY    86      38.304  29.459  19.176  1.00 25.00           C
ATOM     87  CA  ILE    87      36.595  26.736  21.209  1.00 25.00           C
ATOM     88  CA  THR    88      39.860  25.160  22.448  1.00 25.00           C
ATOM     89  CA  SER    89      41.247  28.632  23.281  1.00 25.00           C
ATOM     90  CA  LEU    90      38.043  29.480  25.199  1.00 25.00           C
ATOM     91  CA  PHE    91      38.309  26.193  27.146  1.00 25.00           C
ATOM     92  CA  GLU    92      41.962  26.965  27.998  1.00 25.00           C
ATOM     93  CA  GLN    93      40.967  30.463  29.201  1.00 25.00           C
ATOM     94  CA  LEU    94      38.201  28.955  31.378  1.00 25.00           C
ATOM     95  CA  PRO    95      40.697  26.460  32.865  1.00 25.00           C
ATOM     96  CA  SER    96      42.738  27.767  35.722  1.00 25.00           C
ATOM     97  CA  GLU    97      39.374  28.621  37.235  1.00 25.00           C
ATOM     98  CA  LEU    98      36.564  26.381  35.906  1.00 25.00           C
ATOM     99  CA  ARG    99      33.633  25.995  33.485  1.00 25.00           C
ATOM    100  CA  LEU   100      32.938  25.797  29.693  1.00 25.00           C
ATOM    101  CA  GLY   101      30.869  22.738  28.743  1.00 25.00           C
ATOM    102  CA  ILE   102      28.950  19.762  27.351  1.00 25.00           C
ATOM    103  CA  VAL   103      25.633  19.424  25.564  1.00 25.00           C
ATOM    104  CA  THR   104      22.342  20.016  23.719  1.00 25.00           C
ATOM    105  CA  SER   105      19.799  18.121  21.645  1.00 25.00           C
ATOM    106  CA  GLN   106      22.891  16.335  20.284  1.00 25.00           C
ATOM    107  CA  ARG   107      22.839  14.463  23.650  1.00 25.00           C
ATOM    108  CA  ARG   108      23.014  11.825  26.434  1.00 25.00           C
ATOM    109  CA  ASN   109      24.867   8.870  24.855  1.00 25.00           C
ATOM    110  CA  GLU   110      26.473  11.216  22.289  1.00 25.00           C
ATOM    111  CA  LEU   111      27.560  13.583  25.096  1.00 25.00           C
ATOM    112  CA  GLU   112      29.074  10.641  27.025  1.00 25.00           C
ATOM    113  CA  SER   113      30.959   9.521  23.885  1.00 25.00           C
ATOM    114  CA  GLY   114      32.288  13.078  23.385  1.00 25.00           C
ATOM    115  CA  MET   115      33.438  13.187  27.036  1.00 25.00           C
ATOM    116  CA  ARG   116      35.207   9.819  26.605  1.00 25.00           C
ATOM    117  CA  SER   117      36.939  11.104  23.441  1.00 25.00           C
ATOM    118  CA  TYR   118      36.867  14.063  21.036  1.00 25.00           C
ATOM    119  CA  PRO   119      40.061  15.878  22.165  1.00 25.00           C
ATOM    120  CA  PHE   120      37.862  17.302  24.922  1.00 25.00           C
ATOM    121  CA  MET   121      40.018  15.080  27.144  1.00 25.00           C
ATOM    122  CA  MET   122      39.597  17.741  29.788  1.00 25.00           C
ATOM    123  CA  ARG   123      36.233  19.382  29.402  1.00 25.00           C
ATOM    124  CA  MET   124      33.331  17.242  30.567  1.00 25.00           C
ATOM    125  CA  ALA   125      33.327  17.344  34.337  1.00 25.00           C
ATOM    126  CA  VAL   126      31.578  20.716  33.746  1.00 25.00           C
ATOM    127  CA  THR   127      28.405  18.860  32.640  1.00 25.00           C
ATOM    128  CA  ILE   128      25.258  18.532  30.529  1.00 25.00           C
ATOM    129  CA  SER   129      21.900  19.148  28.787  1.00 25.00           C
ATOM    130  CA  ALA   130      20.760  15.589  29.533  1.00 25.00           C
ATOM    131  CA  ASP   131      22.575  12.847  31.387  1.00 25.00           C
ATOM    132  CA  ASP   132      19.009  11.956  32.545  1.00 25.00           C
ATOM    133  CA  THR   133      17.273  11.215  29.250  1.00 25.00           C
ATOM    134  CA  PRO   134      13.954  11.557  31.087  1.00 25.00           C
ATOM    135  CA  LYS   135      13.919  15.151  32.481  1.00 25.00           C
ATOM    136  CA  ARG   136      15.748  16.340  29.357  1.00 25.00           C
ATOM    137  CA  LYS   137      17.171  18.455  26.556  1.00 25.00           C
ATOM    138  CA  PRO   138      14.070  20.582  26.092  1.00 25.00           C
ATOM    139  CA  ASP   139      14.113  21.422  29.789  1.00 25.00           C
ATOM    140  CA  PRO   140      17.234  21.878  31.874  1.00 25.00           C
ATOM    141  CA  LEU   141      16.745  20.390  35.369  1.00 25.00           C
ATOM    142  CA  PRO   142      19.158  17.539  34.520  1.00 25.00           C
ATOM    143  CA  LEU   143      21.745  20.070  33.264  1.00 25.00           C
ATOM    144  CA  LEU   144      21.368  22.093  36.494  1.00 25.00           C
ATOM    145  CA  THR   145      21.847  18.912  38.572  1.00 25.00           C
ATOM    146  CA  ALA   146      24.992  18.045  36.565  1.00 25.00           C
ATOM    147  CA  LEU   147      26.356  21.579  37.128  1.00 25.00           C
ATOM    148  CA  GLU   148      25.672  21.270  40.884  1.00 25.00           C
ATOM    149  CA  LYS   149      27.482  17.896  40.960  1.00 25.00           C
ATOM    150  CA  VAL   150      30.471  19.428  39.123  1.00 25.00           C
ATOM    151  CA  ASN   151      32.221  21.614  41.711  1.00 25.00           C
ATOM    152  CA  VAL   152      31.943  24.738  39.608  1.00 25.00           C
ATOM    153  CA  ALA   153      32.227  28.555  40.049  1.00 25.00           C
ATOM    154  CA  PRO   154      30.305  30.501  37.424  1.00 25.00           C
ATOM    155  CA  GLN   155      26.734  31.383  38.493  1.00 25.00           C
ATOM    156  CA  ASN   156      26.354  33.655  35.433  1.00 25.00           C
ATOM    157  CA  ALA   157      27.806  31.383  32.697  1.00 25.00           C
ATOM    158  CA  LEU   158      28.598  32.333  29.056  1.00 25.00           C
ATOM    159  CA  PHE   159      27.392  28.825  28.373  1.00 25.00           C
ATOM    160  CA  ILE   160      26.707  28.954  24.605  1.00 25.00           C
ATOM    161  CA  GLY   161      24.697  26.879  22.181  1.00 25.00           C
ATOM    162  CA  ASP   162      22.417  27.463  19.215  1.00 25.00           C
ATOM    163  CA  SER   163      19.919  24.628  18.653  1.00 25.00           C
ATOM    164  CA  VAL   164      17.286  27.193  19.748  1.00 25.00           C
ATOM    165  CA  SER   165      15.605  24.592  22.001  1.00 25.00           C
ATOM    166  CA  ASP   166      18.988  23.733  23.575  1.00 25.00           C
ATOM    167  CA  GLU   167      19.671  27.450  24.195  1.00 25.00           C
ATOM    168  CA  GLN   168      16.226  27.836  25.825  1.00 25.00           C
ATOM    169  CA  THR   169      16.917  24.801  28.059  1.00 25.00           C
ATOM    170  CA  ALA   170      20.298  26.288  29.073  1.00 25.00           C
ATOM    171  CA  GLN   171      18.610  29.622  29.908  1.00 25.00           C
ATOM    172  CA  ALA   172      15.991  27.796  32.024  1.00 25.00           C
ATOM    173  CA  ALA   173      17.571  26.004  35.017  1.00 25.00           C
ATOM    174  CA  ASN   174      18.973  28.700  37.313  1.00 25.00           C
ATOM    175  CA  VAL   175      21.715  29.789  34.887  1.00 25.00           C
ATOM    176  CA  ASP   176      21.496  33.214  33.118  1.00 25.00           C
ATOM    177  CA  PHE   177      23.383  31.544  30.248  1.00 25.00           C
ATOM    178  CA  GLY   178      23.842  33.186  26.826  1.00 25.00           C
ATOM    179  CA  LEU   179      22.119  32.109  23.611  1.00 25.00           C
ATOM    180  CA  ALA   180      24.764  31.826  20.893  1.00 25.00           C
ATOM    181  CA  VAL   181      28.068  31.737  19.071  1.00 25.00           C
ATOM    182  CA  TRP   182      26.559  29.565  16.398  1.00 25.00           C
ATOM    183  CA  GLY   183      24.090  32.462  15.808  1.00 25.00           C
ATOM    184  CA  MET   184      20.884  32.484  17.776  1.00 25.00           C
ATOM    185  CA  ASP   185      17.753  31.389  15.925  1.00 25.00           C
ATOM    186  CA  PRO   186      15.956  34.678  15.187  1.00 25.00           C
ATOM    187  CA  ASN   187      16.250  37.994  16.882  1.00 25.00           C
ATOM    188  CA  ALA   188      13.118  37.865  19.080  1.00 25.00           C
ATOM    189  CA  ASP   189      14.650  35.022  21.139  1.00 25.00           C
ATOM    190  CA  HIS   190      17.875  37.041  21.571  1.00 25.00           C
ATOM    191  CA  GLN   191      15.849  40.084  22.708  1.00 25.00           C
ATOM    192  CA  LYS   192      13.952  37.910  25.227  1.00 25.00           C
ATOM    193  CA  VAL   193      17.305  36.529  26.290  1.00 25.00           C
ATOM    194  CA  ALA   194      19.742  39.330  27.005  1.00 25.00           C
ATOM    195  CA  HIS   195      21.849  37.722  24.234  1.00 25.00           C
ATOM    196  CA  ARG   196      24.445  40.370  25.031  1.00 25.00           C
ATOM    197  CA  PHE   197      26.495  38.289  22.595  1.00 25.00           C
ATOM    198  CA  GLN   198      26.586  41.075  20.087  1.00 25.00           C
ATOM    199  CA  LYS   199      30.296  41.607  20.334  1.00 25.00           C
ATOM    200  CA  PRO   200      32.393  38.455  20.675  1.00 25.00           C
ATOM    201  CA  LEU   201      33.622  39.386  17.169  1.00 25.00           C
ATOM    202  CA  ASP   202      33.001  35.802  15.972  1.00 25.00           C
ATOM    203  CA  ILE   203      29.467  35.896  17.446  1.00 25.00           C
ATOM    204  CA  LEU   204      28.795  39.229  15.682  1.00 25.00           C
ATOM    205  CA  GLU   205      30.041  37.758  12.374  1.00 25.00           C
ATOM    206  CA  LEU   206      27.759  34.717  12.838  1.00 25.00           C
ATOM    207  CA  PHE   207      24.785  37.026  13.537  1.00 25.00           C
TER
END
