
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  142 (  142),  selected  142 , name T0324TS393_3-D1
# Molecule2: number of CA atoms  142 ( 1080),  selected  142 , name T0324_D1.pdb
# PARAMETERS: T0324TS393_3-D1.T0324_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   135         1 - 200         4.87     6.92
  LCS_AVERAGE:     91.02

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    52       128 - 179         2.00     6.89
  LONGEST_CONTINUOUS_SEGMENT:    52       132 - 183         1.99     6.91
  LCS_AVERAGE:     19.35

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19       134 - 152         1.00     7.03
  LCS_AVERAGE:      5.76

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     M       1     M       1      4    6  135     2    3    5   17   36   61   84  101  105  110  115  120  123  124  125  125  125  126  127  128 
LCS_GDT     T       2     T       2      4    6  135     2    4    6   32   58   71   94  101  105  112  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     Y       3     Y       3      4    6  135     3   16   26   48   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     Q       4     Q       4      4    6  135     3   22   37   49   63   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A       5     A       5      4    9  135    10   12   18   33   52   68   84  100  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L       6     L       6      4    9  135     6   23   36   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     M       7     M       7      4    9  135     4    6    9   16   29   48   73   88  105  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     F       8     F       8      4    9  135     4    4   13   39   58   80   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     D       9     D       9      5    9  135     4   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     I      10     I      10      5    9  135     4   15   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     D      11     D      11      5    9  135     3    9   25   45   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     G      12     G      12      5    9  135     3   18   31   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     T      13     T      13      5    9  135     3    9   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L      14     L      14      4    8  135     3    4   13   25   51   63   80   97  105  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     T      15     T      15      4    8  135     3    4   22   48   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     N      16     N      16      4   14  135     2    4    4   22   48   62   70   88  101  111  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     E      82     E      82      6   15  135     3    5    6   10   22   52   71   93  105  112  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L      83     L      83      6   16  135     3   10   25   46   65   81   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     Y      84     Y      84      6   16  135     3    7   23   45   65   80   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     P      85     P      85      6   16  135     3    5   17   37   64   77   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     G      86     G      86      9   16  135     8   12   22   45   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     I      87     I      87      9   16  135     8   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     T      88     T      88      9   16  135     8   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     S      89     S      89      9   16  135     8   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L      90     L      90      9   16  135     8   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     F      91     F      91      9   16  135     8   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     E      92     E      92      9   16  135     8   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     Q      93     Q      93      9   16  135     8   18   34   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L      94     L      94      9   16  135     6   12   26   50   66   82   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     P      95     P      95      4   16  135     4    7   16   32   51   76   93  101  105  112  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     S      96     S      96      4   16  135     4   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     E      97     E      97      4   16  135     4   10   33   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L      98     L      98      4   16  135     4   16   29   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     R      99     R      99      4   14  135     3   22   37   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L     100     L     100      4   11  135     7   23   37   49   62   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     G     101     G     101      4   12  135     3    6   22   33   55   79   93  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     I     102     I     102      4   12  135     4    5   12   20   40   69   90  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     V     103     V     103      4   12  135     4   19   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     T     104     T     104      3   12  135     6   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     S     105     S     105      3   12  135     3    3   17   40   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     Q     106     Q     106      3   12  135     3    8   21   39   58   80   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     R     107     R     107      9   12  135     0    3    5   15   40   77   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     R     108     R     108      9   12  135     6    8    9   17   34   79   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     N     109     N     109      9   12  135     6    8    9   20   39   62   86  100  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     E     110     E     110      9   12  135     6   10   18   37   55   77   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L     111     L     111      9   12  135     9   12   24   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     E     112     E     112      9   12  135     6    8   12   20   48   62   80  100  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     S     113     S     113      9   12  135     6    8   15   34   50   62   75   88   99  111  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     G     114     G     114      9   12  135     5    8   12   29   50   64   80   95  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     M     115     M     115      9   12  135     4    8   12   34   50   69   81   99  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     R     116     R     116      7   12  135     3    7   11   34   54   72   87  100  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     S     117     S     117      7   12  135     3    7   25   46   65   78   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     Y     118     Y     118      7   12  135     3    7    9   28   57   78   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     P     119     P     119      7   12  135     3    7   22   49   63   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     F     120     F     120      7   12  135     3    7    9   44   56   68   90  101  105  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     M     121     M     121      7   12  135     3    7    9   34   54   72   92  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     M     122     M     122      3   12  135     3   12   21   45   65   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     R     123     R     123      3    6  135     3   10   36   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     M     124     M     124      3    5  135     3   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     125     A     125      3    5  135     3   12   36   48   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     V     126     V     126      4    5  135     0    4   17   33   50   64   82   97  105  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     T     127     T     127      4   51  135     2    6   11   39   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     I     128     I     128      4   52  135     6   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     S     129     S     129      4   52  135     3    4   25   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     130     A     130      4   52  135     3    4    5   23   29   44   67   87  103  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     D     131     D     131      6   52  135     3    4   15   34   60   76   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     D     132     D     132      6   52  135     3    6   11   34   52   69   90  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     T     133     T     133      6   52  135     4    6   22   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     P     134     P     134     19   52  135     4    9   29   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     K     135     K     135     19   52  135     6   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     R     136     R     136     19   52  135     6   22   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     K     137     K     137     19   52  135     3   22   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     P     138     P     138     19   52  135     4   20   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     D     139     D     139     19   52  135     7   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     P     140     P     140     19   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L     141     L     141     19   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     P     142     P     142     19   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L     143     L     143     19   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L     144     L     144     19   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     T     145     T     145     19   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     146     A     146     19   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L     147     L     147     19   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     E     148     E     148     19   52  135     8   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     K     149     K     149     19   52  135     8   23   37   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     V     150     V     150     19   52  135     8   23   37   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     N     151     N     151     19   52  135     4   23   37   49   64   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     V     152     V     152     19   52  135     3   10   36   49   62   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     153     A     153      8   52  135     0    5   13   26   51   71   94  101  106  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     P     154     P     154      5   52  135     4    5   10   26   51   76   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     Q     155     Q     155      5   52  135     5   16   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     N     156     N     156      5   52  135     4    5   34   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     157     A     157      5   52  135     4   22   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L     158     L     158      5   52  135     3   10   26   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     F     159     F     159     13   52  135     3   20   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     I     160     I     160     14   52  135     2   14   37   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     G     161     G     161     14   52  135     1    7   30   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     D     162     D     162     14   52  135     8   18   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     S     163     S     163     14   52  135    10   22   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     V     164     V     164     14   52  135    10   22   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     S     165     S     165     14   52  135    10   22   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     D     166     D     166     14   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     E     167     E     167     14   52  135    12   22   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     Q     168     Q     168     14   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     T     169     T     169     14   52  135    10   21   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     170     A     170     14   52  135    10   13   34   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     Q     171     Q     171     14   52  135    10   22   36   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     172     A     172     14   52  135     9   17   36   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     173     A     173     14   52  135     8   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     N     174     N     174      5   52  135     3   16   37   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     V     175     V     175      5   52  135     5   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     D     176     D     176      5   52  135    12   23   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     F     177     F     177      5   52  135     8   18   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     G     178     G     178      4   52  135     4    7   16   28   48   71   88   99  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     L     179     L     179      4   52  135     5   22   37   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     180     A     180      4   52  135     4    5   22   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     V     181     V     181      4   52  135     4    4   12   32   56   77   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     W     182     W     182      4   52  135     4   18   35   50   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     G     183     G     183      4   52  135     4    4   24   49   66   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     M     184     M     184      4   50  135     4    4    5    7    7   37   50  101  105  112  117  121  123  124  125  125  125  126  127  128 
LCS_GDT     D     185     D     185      4    8  135     3    4    5    8   22   29   36   46   52   84   94  110  115  122  125  125  125  126  127  128 
LCS_GDT     P     186     P     186      6    8  135     4    6    6    8   11   13   32   46   52   67   76   85   94  100  118  122  125  126  127  128 
LCS_GDT     N     187     N     187      6    8  135     4    6    6    8    9   11   14   18   20   23   29   32   36   87  108  109  115  124  127  128 
LCS_GDT     A     188     A     188      6    8  135     4    6    6    8   11   14   17   38   51   56   74   86   94  102  116  122  125  126  127  128 
LCS_GDT     D     189     D     189      6    8  135     4    6    6   27   36   58   84  101  105  112  117  121  123  124  125  125  125  126  127  128 
LCS_GDT     H     190     H     190      6    8  135     4    6    6    6    7   10   25   55   75   81  115  116  123  124  125  125  125  126  127  128 
LCS_GDT     Q     191     Q     191      6    8  135     4    6    6   10   15   28   37   55   75   94  115  119  123  124  125  125  125  126  127  128 
LCS_GDT     K     192     K     192      3    8  135     3   16   26   44   65   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     V     193     V     193      3    8  135     3   11   36   49   65   83   94  101  108  114  118  121  123  124  125  125  125  126  127  128 
LCS_GDT     A     194     A     194      4    7  135     3    5    7   10   18   39   47   70   82   99  108  114  119  120  121  123  124  125  127  127 
LCS_GDT     H     195     H     195      4    7  135     3    4    4    7    9   10   30   41   52   59   92  109  116  119  119  121  124  125  126  127 
LCS_GDT     R     196     R     196      4    7  135     1    4    5   13   31   52   71   83   98  109  115  118  120  122  123  123  125  126  127  127 
LCS_GDT     F     197     F     197      4    7  135     2    4    4    7    9   13   30   41   52   59   92  102  113  119  119  121  124  125  126  127 
LCS_GDT     Q     198     Q     198      4    4  135     1    4    4    7    9   15   20   31   38   54   58   76   92   95  105  116  119  123  126  127 
LCS_GDT     K     199     K     199      4    4  135     3    4    4    4    4    5    8   12   13   20   28   41   62   69   82   97  103  108  120  125 
LCS_GDT     P     200     P     200      6    8  135     3    4    7    8    9   10   11   12   13   14   17   22   62   69   75   94   97  106  118  124 
LCS_GDT     L     201     L     201      6    8   21     3    4    7    8    9   10   11   12   15   22   26   32   45   67   75   84   91   96  104  104 
LCS_GDT     D     202     D     202      6    8   19     3    4    7    9   13   16   26   41   52   59   63   72   82   86  100  106  117  118  122  125 
LCS_GDT     I     203     I     203      6    8   18     3    4    7    8    9   10   11   16   17   38   58   63   82   86   90   95  102  109  116  120 
LCS_GDT     L     204     L     204      6    8   18     3    4    7    8    9   10   11   12   13   14   17   19   20   29   33   37   38   52   55   62 
LCS_GDT     E     205     E     205      6    8   18     3    4    7    8    9   10   11   11   13   14   17   19   22   27   31   35   39   49   52   58 
LCS_GDT     L     206     L     206      6    8   17     3    4    7    8    9   10   10   11   12   14   17   19   20   23   31   51   53   55   57   79 
LCS_GDT     F     207     F     207      6    8   17     3    4    7    8    8    8   11   11   12   14   15   19   20   23   29   32   33   35   37   40 
LCS_AVERAGE  LCS_A:  38.71  (   5.76   19.35   91.02 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     12     23     37     50     66     83     94    101    108    114    118    121    123    124    125    125    125    126    127    128 
GDT PERCENT_CA   8.45  16.20  26.06  35.21  46.48  58.45  66.20  71.13  76.06  80.28  83.10  85.21  86.62  87.32  88.03  88.03  88.03  88.73  89.44  90.14
GDT RMS_LOCAL    0.39   0.66   1.02   1.42   1.69   2.02   2.25   2.42   2.64   2.83   2.96   3.08   3.20   3.28   3.38   3.38   3.35   3.45   3.55   3.83
GDT RMS_ALL_CA   6.88   6.98   6.92   6.98   6.96   6.88   6.94   6.93   6.91   6.87   6.93   6.95   7.00   7.04   7.08   7.08   7.00   7.04   7.01   7.26

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          6.701
LGA    T       2      T       2          4.554
LGA    Y       3      Y       3          2.086
LGA    Q       4      Q       4          3.479
LGA    A       5      A       5          4.857
LGA    L       6      L       6          2.374
LGA    M       7      M       7          5.427
LGA    F       8      F       8          3.328
LGA    D       9      D       9          1.321
LGA    I      10      I      10          1.979
LGA    D      11      D      11          2.730
LGA    G      12      G      12          2.402
LGA    T      13      T      13          2.139
LGA    L      14      L      14          5.339
LGA    T      15      T      15          2.810
LGA    N      16      N      16          6.169
LGA    E      82      E      82          5.694
LGA    L      83      L      83          2.668
LGA    Y      84      Y      84          2.846
LGA    P      85      P      85          3.517
LGA    G      86      G      86          2.623
LGA    I      87      I      87          2.107
LGA    T      88      T      88          2.097
LGA    S      89      S      89          2.155
LGA    L      90      L      90          2.315
LGA    F      91      F      91          2.173
LGA    E      92      E      92          2.305
LGA    Q      93      Q      93          2.519
LGA    L      94      L      94          2.913
LGA    P      95      P      95          5.036
LGA    S      96      S      96          0.841
LGA    E      97      E      97          2.378
LGA    L      98      L      98          2.401
LGA    R      99      R      99          3.155
LGA    L     100      L     100          3.160
LGA    G     101      G     101          3.582
LGA    I     102      I     102          3.999
LGA    V     103      V     103          2.009
LGA    T     104      T     104          1.524
LGA    S     105      S     105          2.461
LGA    Q     106      Q     106          3.829
LGA    R     107      R     107          3.250
LGA    R     108      R     108          3.145
LGA    N     109      N     109          4.872
LGA    E     110      E     110          3.962
LGA    L     111      L     111          2.048
LGA    E     112      E     112          4.919
LGA    S     113      S     113          6.475
LGA    G     114      G     114          5.591
LGA    M     115      M     115          5.072
LGA    R     116      R     116          4.787
LGA    S     117      S     117          3.856
LGA    Y     118      Y     118          3.893
LGA    P     119      P     119          3.453
LGA    F     120      F     120          4.991
LGA    M     121      M     121          3.679
LGA    M     122      M     122          2.625
LGA    R     123      R     123          2.372
LGA    M     124      M     124          1.210
LGA    A     125      A     125          3.256
LGA    V     126      V     126          4.711
LGA    T     127      T     127          2.610
LGA    I     128      I     128          1.425
LGA    S     129      S     129          2.572
LGA    A     130      A     130          5.889
LGA    D     131      D     131          3.904
LGA    D     132      D     132          4.465
LGA    T     133      T     133          2.823
LGA    P     134      P     134          2.068
LGA    K     135      K     135          0.567
LGA    R     136      R     136          1.568
LGA    K     137      K     137          2.217
LGA    P     138      P     138          2.423
LGA    D     139      D     139          0.934
LGA    P     140      P     140          1.281
LGA    L     141      L     141          1.279
LGA    P     142      P     142          1.185
LGA    L     143      L     143          1.040
LGA    L     144      L     144          1.329
LGA    T     145      T     145          1.711
LGA    A     146      A     146          1.758
LGA    L     147      L     147          1.411
LGA    E     148      E     148          2.147
LGA    K     149      K     149          2.720
LGA    V     150      V     150          2.746
LGA    N     151      N     151          3.001
LGA    V     152      V     152          3.209
LGA    A     153      A     153          3.932
LGA    P     154      P     154          3.733
LGA    Q     155      Q     155          2.233
LGA    N     156      N     156          2.941
LGA    A     157      A     157          2.386
LGA    L     158      L     158          3.077
LGA    F     159      F     159          2.445
LGA    I     160      I     160          3.113
LGA    G     161      G     161          2.300
LGA    D     162      D     162          2.377
LGA    S     163      S     163          2.158
LGA    V     164      V     164          2.636
LGA    S     165      S     165          1.612
LGA    D     166      D     166          1.151
LGA    E     167      E     167          1.691
LGA    Q     168      Q     168          0.896
LGA    T     169      T     169          0.420
LGA    A     170      A     170          1.743
LGA    Q     171      Q     171          1.406
LGA    A     172      A     172          1.296
LGA    A     173      A     173          1.175
LGA    N     174      N     174          2.115
LGA    V     175      V     175          0.534
LGA    D     176      D     176          1.333
LGA    F     177      F     177          0.756
LGA    G     178      G     178          4.811
LGA    L     179      L     179          1.931
LGA    A     180      A     180          2.065
LGA    V     181      V     181          3.544
LGA    W     182      W     182          1.003
LGA    G     183      G     183          1.876
LGA    M     184      M     184          5.189
LGA    D     185      D     185          9.587
LGA    P     186      P     186         12.620
LGA    N     187      N     187         14.737
LGA    A     188      A     188         12.408
LGA    D     189      D     189          5.808
LGA    H     190      H     190          8.299
LGA    Q     191      Q     191          8.702
LGA    K     192      K     192          2.568
LGA    V     193      V     193          3.177
LGA    A     194      A     194          9.974
LGA    H     195      H     195         11.856
LGA    R     196      R     196          8.246
LGA    F     197      F     197         12.304
LGA    Q     198      Q     198         14.734
LGA    K     199      K     199         16.978
LGA    P     200      P     200         16.272
LGA    L     201      L     201         20.455
LGA    D     202      D     202         16.453
LGA    I     203      I     203         17.227
LGA    L     204      L     204         24.598
LGA    E     205      E     205         25.542
LGA    L     206      L     206         24.704
LGA    F     207      F     207         29.098

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  142  142    4.0    101    2.42    52.641    48.916     4.009

LGA_LOCAL      RMSD =  2.419  Number of atoms =  101  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  6.980  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  6.723  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.355179 * X  +  -0.502847 * Y  +  -0.788031 * Z  +  25.233978
  Y_new =  -0.493560 * X  +  -0.615041 * Y  +   0.614917 * Z  +  19.839849
  Z_new =  -0.793880 * X  +   0.607346 * Y  +  -0.029735 * Z  +  21.390966 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.619717   -1.521876  [ DEG:    92.8029    -87.1971 ]
  Theta =   0.917164    2.224428  [ DEG:    52.5496    127.4504 ]
  Phi   =  -2.194573    0.947019  [ DEG:  -125.7398     54.2602 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0324TS393_3-D1                               
REMARK     2: T0324_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0324TS393_3-D1.T0324_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  142  142   4.0  101   2.42  48.916     6.72
REMARK  ---------------------------------------------------------- 
MOLECULE T0324TS393_3-D1
PFRMAT TS
TARGET T0324
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1      36.783  35.036  40.696  1.00 25.00           C
ATOM      2  CA  THR     2      33.039  34.527  40.323  1.00 25.00           C
ATOM      3  CA  TYR     3      32.312  32.334  37.300  1.00 25.00           C
ATOM      4  CA  GLN     4      32.000  29.209  35.256  1.00 25.00           C
ATOM      5  CA  ALA     5      31.390  31.292  32.154  1.00 25.00           C
ATOM      6  CA  LEU     6      29.476  28.771  29.994  1.00 25.00           C
ATOM      7  CA  MET     7      29.419  28.239  26.211  1.00 25.00           C
ATOM      8  CA  PHE     8      29.143  25.231  23.805  1.00 25.00           C
ATOM      9  CA  ASP     9      26.727  22.352  24.449  1.00 25.00           C
ATOM     10  CA  ILE    10      27.603  19.254  22.418  1.00 25.00           C
ATOM     11  CA  ASP    11      24.474  19.988  20.423  1.00 25.00           C
ATOM     12  CA  GLY    12      25.421  23.055  18.355  1.00 25.00           C
ATOM     13  CA  THR    13      29.012  24.189  18.776  1.00 25.00           C
ATOM     14  CA  LEU    14      29.352  23.717  14.999  1.00 25.00           C
ATOM     15  CA  THR    15      31.089  20.329  14.421  1.00 25.00           C
ATOM     16  CA  ASN    16      31.093  18.674  17.886  1.00 25.00           C
ATOM     82  CA  GLU    82      39.769  19.988  15.482  1.00 25.00           C
ATOM     83  CA  LEU    83      36.902  21.261  17.608  1.00 25.00           C
ATOM     84  CA  TYR    84      36.754  24.886  16.505  1.00 25.00           C
ATOM     85  CA  PRO    85      39.718  26.955  17.614  1.00 25.00           C
ATOM     86  CA  GLY    86      37.180  28.570  19.957  1.00 25.00           C
ATOM     87  CA  ILE    87      35.978  25.345  21.512  1.00 25.00           C
ATOM     88  CA  THR    88      39.325  23.797  22.543  1.00 25.00           C
ATOM     89  CA  SER    89      40.761  27.285  23.208  1.00 25.00           C
ATOM     90  CA  LEU    90      37.700  28.166  25.335  1.00 25.00           C
ATOM     91  CA  PHE    91      38.114  24.917  27.320  1.00 25.00           C
ATOM     92  CA  GLU    92      41.816  25.709  27.893  1.00 25.00           C
ATOM     93  CA  GLN    93      40.904  29.227  29.098  1.00 25.00           C
ATOM     94  CA  LEU    94      38.303  27.757  31.495  1.00 25.00           C
ATOM     95  CA  PRO    95      40.906  25.293  32.846  1.00 25.00           C
ATOM     96  CA  SER    96      41.119  26.977  36.304  1.00 25.00           C
ATOM     97  CA  GLU    97      37.692  28.559  36.659  1.00 25.00           C
ATOM     98  CA  LEU    98      35.346  25.551  36.197  1.00 25.00           C
ATOM     99  CA  ARG    99      33.047  23.984  33.545  1.00 25.00           C
ATOM    100  CA  LEU   100      32.753  24.565  29.830  1.00 25.00           C
ATOM    101  CA  GLY   101      28.955  24.097  29.658  1.00 25.00           C
ATOM    102  CA  ILE   102      25.340  23.084  29.292  1.00 25.00           C
ATOM    103  CA  VAL   103      22.732  20.731  27.879  1.00 25.00           C
ATOM    104  CA  THR   104      22.414  19.052  24.462  1.00 25.00           C
ATOM    105  CA  SER   105      18.840  18.301  25.635  1.00 25.00           C
ATOM    106  CA  GLN   106      19.017  15.761  22.774  1.00 25.00           C
ATOM    107  CA  ARG   107      21.742  13.875  24.648  1.00 25.00           C
ATOM    108  CA  ARG   108      24.750  12.641  26.652  1.00 25.00           C
ATOM    109  CA  ASN   109      26.679   9.524  27.763  1.00 25.00           C
ATOM    110  CA  GLU   110      28.386   9.331  24.339  1.00 25.00           C
ATOM    111  CA  LEU   111      29.344  13.031  24.580  1.00 25.00           C
ATOM    112  CA  GLU   112      30.783  12.455  28.082  1.00 25.00           C
ATOM    113  CA  SER   113      32.805   9.471  26.788  1.00 25.00           C
ATOM    114  CA  GLY   114      34.143  11.599  23.898  1.00 25.00           C
ATOM    115  CA  MET   115      35.135  14.361  26.358  1.00 25.00           C
ATOM    116  CA  ARG   116      36.933  11.790  28.556  1.00 25.00           C
ATOM    117  CA  SER   117      38.794  10.438  25.494  1.00 25.00           C
ATOM    118  CA  TYR   118      38.942  11.887  21.919  1.00 25.00           C
ATOM    119  CA  PRO   119      41.719  14.509  21.988  1.00 25.00           C
ATOM    120  CA  PHE   120      39.590  17.622  21.363  1.00 25.00           C
ATOM    121  CA  MET   121      39.639  17.902  25.156  1.00 25.00           C
ATOM    122  CA  MET   122      40.107  18.548  28.875  1.00 25.00           C
ATOM    123  CA  ARG   123      36.796  20.160  29.699  1.00 25.00           C
ATOM    124  CA  MET   124      35.079  19.232  32.913  1.00 25.00           C
ATOM    125  CA  ALA   125      31.724  17.367  33.229  1.00 25.00           C
ATOM    126  CA  VAL   126      31.407  19.787  30.367  1.00 25.00           C
ATOM    127  CA  THR   127      27.756  18.735  30.277  1.00 25.00           C
ATOM    128  CA  ILE   128      24.683  16.514  29.828  1.00 25.00           C
ATOM    129  CA  SER   129      21.311  14.907  29.877  1.00 25.00           C
ATOM    130  CA  ALA   130      22.520  12.441  32.472  1.00 25.00           C
ATOM    131  CA  ASP   131      18.830  11.673  32.776  1.00 25.00           C
ATOM    132  CA  ASP   132      18.723  12.300  36.558  1.00 25.00           C
ATOM    133  CA  THR   133      16.330  15.078  35.590  1.00 25.00           C
ATOM    134  CA  PRO   134      13.038  14.107  33.954  1.00 25.00           C
ATOM    135  CA  LYS   135      13.154  16.367  30.965  1.00 25.00           C
ATOM    136  CA  ARG   136      14.730  16.103  27.566  1.00 25.00           C
ATOM    137  CA  LYS   137      13.982  19.684  26.530  1.00 25.00           C
ATOM    138  CA  PRO   138      11.617  22.562  27.285  1.00 25.00           C
ATOM    139  CA  ASP   139      12.094  21.840  30.999  1.00 25.00           C
ATOM    140  CA  PRO   140      15.466  23.104  32.034  1.00 25.00           C
ATOM    141  CA  LEU   141      15.913  19.780  33.884  1.00 25.00           C
ATOM    142  CA  PRO   142      18.957  18.952  31.711  1.00 25.00           C
ATOM    143  CA  LEU   143      20.453  22.399  32.449  1.00 25.00           C
ATOM    144  CA  LEU   144      19.892  21.865  36.200  1.00 25.00           C
ATOM    145  CA  THR   145      21.591  18.440  35.992  1.00 25.00           C
ATOM    146  CA  ALA   146      24.564  19.998  34.149  1.00 25.00           C
ATOM    147  CA  LEU   147      24.833  22.719  36.831  1.00 25.00           C
ATOM    148  CA  GLU   148      24.768  20.052  39.578  1.00 25.00           C
ATOM    149  CA  LYS   149      27.522  18.093  37.776  1.00 25.00           C
ATOM    150  CA  VAL   150      29.632  21.276  37.488  1.00 25.00           C
ATOM    151  CA  ASN   151      30.010  22.701  40.985  1.00 25.00           C
ATOM    152  CA  VAL   152      30.150  26.303  39.658  1.00 25.00           C
ATOM    153  CA  ALA   153      27.919  26.901  42.735  1.00 25.00           C
ATOM    154  CA  PRO   154      25.309  27.662  40.076  1.00 25.00           C
ATOM    155  CA  GLN   155      23.698  31.096  39.549  1.00 25.00           C
ATOM    156  CA  ASN   156      25.858  31.658  36.438  1.00 25.00           C
ATOM    157  CA  ALA   157      26.608  28.465  34.519  1.00 25.00           C
ATOM    158  CA  LEU   158      24.266  29.173  31.644  1.00 25.00           C
ATOM    159  CA  PHE   159      23.151  27.768  28.299  1.00 25.00           C
ATOM    160  CA  ILE   160      24.394  27.460  24.718  1.00 25.00           C
ATOM    161  CA  GLY   161      25.152  27.389  21.006  1.00 25.00           C
ATOM    162  CA  ASP   162      21.531  27.016  19.940  1.00 25.00           C
ATOM    163  CA  SER   163      17.783  26.419  19.306  1.00 25.00           C
ATOM    164  CA  VAL   164      14.345  27.127  20.770  1.00 25.00           C
ATOM    165  CA  SER   165      14.684  24.581  23.611  1.00 25.00           C
ATOM    166  CA  ASP   166      18.167  25.938  24.445  1.00 25.00           C
ATOM    167  CA  GLU   167      16.790  29.511  24.496  1.00 25.00           C
ATOM    168  CA  GLN   168      13.956  28.412  26.826  1.00 25.00           C
ATOM    169  CA  THR   169      16.488  26.718  29.147  1.00 25.00           C
ATOM    170  CA  ALA   170      18.614  29.905  29.193  1.00 25.00           C
ATOM    171  CA  GLN   171      15.513  31.989  30.037  1.00 25.00           C
ATOM    172  CA  ALA   172      14.636  29.578  32.880  1.00 25.00           C
ATOM    173  CA  ALA   173      17.043  27.181  34.616  1.00 25.00           C
ATOM    174  CA  ASN   174      18.196  29.956  36.916  1.00 25.00           C
ATOM    175  CA  VAL   175      20.384  31.448  34.148  1.00 25.00           C
ATOM    176  CA  ASP   176      21.361  33.852  31.366  1.00 25.00           C
ATOM    177  CA  PHE   177      23.211  32.774  28.234  1.00 25.00           C
ATOM    178  CA  GLY   178      21.403  31.665  25.153  1.00 25.00           C
ATOM    179  CA  LEU   179      23.511  32.253  22.059  1.00 25.00           C
ATOM    180  CA  ALA   180      27.238  31.836  22.421  1.00 25.00           C
ATOM    181  CA  VAL   181      29.318  33.186  19.455  1.00 25.00           C
ATOM    182  CA  TRP   182      29.147  31.577  16.048  1.00 25.00           C
ATOM    183  CA  GLY   183      25.578  30.456  16.284  1.00 25.00           C
ATOM    184  CA  MET   184      24.795  34.040  17.449  1.00 25.00           C
ATOM    185  CA  ASP   185      27.057  37.109  17.246  1.00 25.00           C
ATOM    186  CA  PRO   186      27.175  40.950  17.375  1.00 25.00           C
ATOM    187  CA  ASN   187      27.118  40.558  21.114  1.00 25.00           C
ATOM    188  CA  ALA   188      24.238  42.947  21.925  1.00 25.00           C
ATOM    189  CA  ASP   189      21.699  40.309  20.797  1.00 25.00           C
ATOM    190  CA  HIS   190      23.412  37.685  22.999  1.00 25.00           C
ATOM    191  CA  GLN   191      23.305  40.083  25.984  1.00 25.00           C
ATOM    192  CA  LYS   192      19.580  40.724  25.366  1.00 25.00           C
ATOM    193  CA  VAL   193      17.645  37.538  24.890  1.00 25.00           C
ATOM    194  CA  ALA   194      16.508  38.949  21.499  1.00 25.00           C
ATOM    195  CA  HIS   195      16.380  35.293  20.423  1.00 25.00           C
ATOM    196  CA  ARG   196      19.852  35.318  18.868  1.00 25.00           C
ATOM    197  CA  PHE   197      19.201  32.148  16.899  1.00 25.00           C
ATOM    198  CA  GLN   198      16.471  34.152  15.155  1.00 25.00           C
ATOM    199  CA  LYS   199      17.282  37.527  13.708  1.00 25.00           C
ATOM    200  CA  PRO   200      20.939  38.134  14.257  1.00 25.00           C
ATOM    201  CA  LEU   201      21.106  37.865  10.441  1.00 25.00           C
ATOM    202  CA  ASP   202      24.226  35.659  10.710  1.00 25.00           C
ATOM    203  CA  ILE   203      22.453  33.418  13.258  1.00 25.00           C
ATOM    204  CA  LEU   204      19.426  33.124  10.930  1.00 25.00           C
ATOM    205  CA  GLU   205      21.729  32.189   8.016  1.00 25.00           C
ATOM    206  CA  LEU   206      23.433  29.530  10.182  1.00 25.00           C
ATOM    207  CA  PHE   207      20.016  28.110  11.169  1.00 25.00           C
TER
END
