
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  142 (  142),  selected  142 , name T0324TS168_2-D1
# Molecule2: number of CA atoms  142 ( 1080),  selected  142 , name T0324_D1.pdb
# PARAMETERS: T0324TS168_2-D1.T0324_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   140         1 - 205         4.73     5.55
  LONGEST_CONTINUOUS_SEGMENT:   140         2 - 206         5.00     5.53
  LCS_AVERAGE:     97.98

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    51       136 - 186         1.92     5.72
  LONGEST_CONTINUOUS_SEGMENT:    51       137 - 187         1.99     5.75
  LCS_AVERAGE:     20.37

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    19       142 - 160         0.99     5.75
  LCS_AVERAGE:      6.33

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     M       1     M       1      4    9  140     2    3    5   10   17   25   40   58   74   91  108  114  118  123  126  133  134  135  135  135 
LCS_GDT     T       2     T       2      4    9  140     3    3    5    6   16   25   48   58   76   91  108  115  119  123  129  133  134  135  135  135 
LCS_GDT     Y       3     Y       3      4    9  140     3    4    9   27   35   44   67   88  102  113  123  129  131  132  133  133  134  135  135  135 
LCS_GDT     Q       4     Q       4      4   11  140     5   14   17   34   55   70   89  101  112  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A       5     A       5      4   11  140     3    7   13   20   39   58   81   94  107  121  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L       6     L       6      4   11  140     3    4   14   27   48   74   89  101  113  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     M       7     M       7      5   11  140     3    5   21   44   59   80   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     F       8     F       8      5   22  140     5   13   33   50   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     D       9     D       9      6   22  140     3   18   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     I      10     I      10      6   22  140     3   14   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     D      11     D      11      6   22  140     3    8   30   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     G      12     G      12      6   22  140     3    5   20   41   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     T      13     T      13      6   22  140     3    7   20   34   58   79   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L      14     L      14      6   22  140     3   11   20   33   58   79   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     T      15     T      15      6   22  140     3   11   19   33   51   70   90  102  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     N      16     N      16      6   22  140     3    6   20   26   51   70   89  101  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     E      82     E      82      3   22  140     3    3    6   11   30   55   78   99  111  120  125  129  131  132  133  133  134  135  135  135 
LCS_GDT     L      83     L      83     12   23  140     3   10   19   41   65   79   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     Y      84     Y      84     12   23  140     3   12   21   43   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P      85     P      85     12   23  140     4   12   20   42   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     G      86     G      86     12   23  140     8   12   20   42   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     I      87     I      87     12   23  140     8   12   20   42   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     T      88     T      88     12   23  140     8   12   20   41   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     S      89     S      89     12   23  140     8   12   20   41   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L      90     L      90     12   23  140     8   12   20   44   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     F      91     F      91     12   23  140     8   12   20   39   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     E      92     E      92     12   23  140     8   12   20   38   57   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     Q      93     Q      93     12   23  140     8   12   20   38   63   81   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L      94     L      94     12   23  140     6   12   20   39   63   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P      95     P      95      3   23  140     3    9   26   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     S      96     S      96      3   23  140     3    3   17   31   50   75   93  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     E      97     E      97      4   23  140     3    6   17   32   55   75   95  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L      98     L      98      4   23  140     3    9   20   43   63   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     R      99     R      99      4   23  140     3    4    9   18   32   57   82  100  112  122  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L     100     L     100      4   23  140     6   11   19   35   49   75   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     G     101     G     101      4   23  140     4   10   19   45   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     I     102     I     102      4   23  140     4   10   33   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     V     103     V     103      4   23  140     4    9   31   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     T     104     T     104      5   23  140     3    9   30   50   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     S     105     S     105      5   23  140     3    6   17   44   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     Q     106     Q     106      5   21  140     3    6   19   39   65   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     R     107     R     107      5   21  140     3    6   13   31   63   80   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     R     108     R     108      8   21  140     7    8   13   43   65   81   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     N     109     N     109      8   21  140     7    9   19   35   64   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     E     110     E     110      8   21  140     7   10   30   49   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L     111     L     111      8   21  140     7    8   30   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     E     112     E     112      8   21  140     7    8   14   31   41   65   91  105  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     S     113     S     113      8   21  140     7    8   13   28   50   68   91  105  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     G     114     G     114      8   21  140     7    8   13   31   50   75   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     M     115     M     115      8   21  140     4    8   12   24   41   67   91  105  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     R     116     R     116      6   21  140     4    8   19   33   50   75   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     S     117     S     117      6   21  140     3    6   18   31   53   80   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     Y     118     Y     118      6   19  140     3    6   19   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P     119     P     119      6   11  140     4   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     F     120     F     120      6   11  140     7   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     M     121     M     121      5   11  140     3    3    5    9   17   57   85  100  114  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     M     122     M     122      3   11  140     4   10   26   49   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     R     123     R     123      3    9  140     3    3   23   51   65   81   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     M     124     M     124      3    9  140     3    5   12   48   64   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     125     A     125      5    9  140     3    6   23   51   65   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     V     126     V     126      5    9  140     5   15   30   46   62   76   93  106  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     T     127     T     127      5    9  140     4    7   23   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     I     128     I     128      5    9  140     8   19   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     S     129     S     129      5    9  140     3    9   23   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     130     A     130      5    9  140     3    7   15   28   58   78   95  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     D     131     D     131      3    8  140     3    5   10   19   36   54   69   96  113  118  125  129  131  132  133  133  134  135  135  135 
LCS_GDT     D     132     D     132      4    8  140     3    4    5    8   30   45   62   79  103  118  124  129  131  132  133  133  134  135  135  135 
LCS_GDT     T     133     T     133      4    8  140     3    5   14   28   41   56   86  101  113  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P     134     P     134      4    8  140     3    5   14   26   34   49   61   85  106  118  124  129  131  132  133  133  134  135  135  135 
LCS_GDT     K     135     K     135      4   48  140     3    7    8   11   15   24   57   72   97  110  123  128  131  132  133  133  134  135  135  135 
LCS_GDT     R     136     R     136     17   51  140     3    4   28   40   58   79   94  106  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     K     137     K     137     18   51  140     9   21   35   49   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P     138     P     138     18   51  140     3    9   33   49   65   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     D     139     D     139     18   51  140    10   21   36   50   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P     140     P     140     18   51  140     6    9   28   40   58   79   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L     141     L     141     18   51  140     9   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P     142     P     142     19   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L     143     L     143     19   51  140    10   21   36   50   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L     144     L     144     19   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     T     145     T     145     19   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     146     A     146     19   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L     147     L     147     19   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     E     148     E     148     19   51  140     9   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     K     149     K     149     19   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     V     150     V     150     19   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     N     151     N     151     19   51  140    10   22   36   51   65   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     V     152     V     152     19   51  140     9   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     153     A     153     19   51  140     4   16   36   50   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P     154     P     154     19   51  140     4   19   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     Q     155     Q     155     19   51  140     3    9   20   46   62   79   94  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     N     156     N     156     19   51  140     3   17   35   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     157     A     157     19   51  140     4   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L     158     L     158     19   51  140     8   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     F     159     F     159     19   51  140     7   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     I     160     I     160     19   51  140     6   17   30   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     G     161     G     161      8   51  140     4   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     D     162     D     162     14   51  140     3   19   31   46   64   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     S     163     S     163     14   51  140    10   14   26   46   63   81   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     V     164     V     164     14   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     S     165     S     165     14   51  140    10   21   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     D     166     D     166     14   51  140    10   19   35   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     E     167     E     167     14   51  140    10   20   36   49   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     Q     168     Q     168     14   51  140    10   19   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     T     169     T     169     14   51  140    10   21   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     170     A     170     14   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     Q     171     Q     171     14   51  140    10   19   27   46   66   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     172     A     172     14   51  140    10   19   27   47   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     173     A     173     14   51  140    10   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     N     174     N     174     14   51  140     4   18   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     V     175     V     175     14   51  140     8   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     D     176     D     176      5   51  140     1    7   24   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     F     177     F     177      5   51  140     2   10   30   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     G     178     G     178      5   51  140     3   19   35   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     L     179     L     179      5   51  140     5   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     180     A     180      5   51  140     3    4   16   45   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     V     181     V     181      4   51  140     3    3   17   32   46   73   91  105  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     W     182     W     182      5   51  140     3    4   11   23   59   79   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     G     183     G     183      5   51  140     3    9   31   51   66   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     M     184     M     184      5   51  140     3    4    4   14   34   57   89  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     D     185     D     185      5   51  140     3    6   29   51   65   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P     186     P     186      6   51  140     4   16   32   51   65   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     N     187     N     187      6   51  140     4    6    7   35   63   75   91  105  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     188     A     188      6    8  140     4    6    6   11   32   44   58   91  108  118  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     D     189     D     189      6    8  140     4    6    7   34   52   71   88  107  114  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     H     190     H     190      6    8  140     4    6    6   27   45   71   91  105  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     Q     191     Q     191      6    8  140     4    6   11   30   65   80   98  106  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     K     192     K     192      4    8  140     8   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     V     193     V     193      4    8  140     6   22   36   51   67   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     A     194     A     194      4    8  140     3    4    8   28   45   73   95  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     H     195     H     195      4    8  140     3    6   26   49   64   82   98  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     R     196     R     196      4    8  140     0    5   10   31   52   77   95  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     F     197     F     197      4    8  140     3    8   20   46   59   77   95  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     Q     198     Q     198      4    8  140     3    3   12   39   58   73   93  107  115  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     K     199     K     199      4    9  140     3    3   18   39   54   69   85  106  114  123  126  129  131  132  133  133  134  135  135  135 
LCS_GDT     P     200     P     200      6    9  140     4    4    7    8   22   33   56   73   83   99  116  125  128  132  133  133  134  135  135  135 
LCS_GDT     L     201     L     201      6    9  140     3    4    7    8    9   10   13   18   26   29   53   58   90   96  107  119  124  132  134  135 
LCS_GDT     D     202     D     202      6    9  140     3    4    7    9   10   13   17   23   52   62   70   80   89   94  118  124  129  133  134  135 
LCS_GDT     I     203     I     203      6    9  140     3    4    8    9   10   13   15   19   23   32   47   59   89   93   96  107  120  126  134  135 
LCS_GDT     L     204     L     204      6    9  140     3    4    7    8    9   10   11   12   21   22   24   29   36   41   42   48   57   62   87   90 
LCS_GDT     E     205     E     205      6    9  140     3    4    7    8    9   10   11   17   21   22   24   29   31   41   47   53   57   62   70   76 
LCS_GDT     L     206     L     206      6    9  140     3    4    7    8    9   10   11   12   13   14   16   20   22   23   26   28   57   62   70   76 
LCS_GDT     F     207     F     207      6    9   17     3    4    7    8    9    9   11   11   12   14   16   20   22   23   26   28   31   34   38   42 
LCS_AVERAGE  LCS_A:  41.56  (   6.33   20.37   97.98 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     10     22     36     51     67     82     98    107    115    123    126    129    131    132    133    133    134    135    135    135 
GDT PERCENT_CA   7.04  15.49  25.35  35.92  47.18  57.75  69.01  75.35  80.99  86.62  88.73  90.85  92.25  92.96  93.66  93.66  94.37  95.07  95.07  95.07
GDT RMS_LOCAL    0.17   0.73   1.04   1.45   1.84   2.06   2.36   2.55   2.73   2.91   3.01   3.14   3.22   3.26   3.32   3.32   3.43   3.56   3.56   3.56
GDT RMS_ALL_CA   9.88   5.69   5.71   5.62   5.70   5.63   5.65   5.61   5.64   5.65   5.64   5.66   5.68   5.68   5.66   5.66   5.69   5.72   5.72   5.72

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         13.146
LGA    T       2      T       2         11.381
LGA    Y       3      Y       3          7.610
LGA    Q       4      Q       4          5.825
LGA    A       5      A       5          6.160
LGA    L       6      L       6          4.938
LGA    M       7      M       7          3.359
LGA    F       8      F       8          2.209
LGA    D       9      D       9          1.246
LGA    I      10      I      10          1.273
LGA    D      11      D      11          0.728
LGA    G      12      G      12          3.024
LGA    T      13      T      13          3.872
LGA    L      14      L      14          3.780
LGA    T      15      T      15          4.888
LGA    N      16      N      16          5.044
LGA    E      82      E      82          6.049
LGA    L      83      L      83          3.793
LGA    Y      84      Y      84          3.058
LGA    P      85      P      85          3.718
LGA    G      86      G      86          3.036
LGA    I      87      I      87          2.799
LGA    T      88      T      88          3.216
LGA    S      89      S      89          2.551
LGA    L      90      L      90          2.246
LGA    F      91      F      91          2.548
LGA    E      92      E      92          3.178
LGA    Q      93      Q      93          2.996
LGA    L      94      L      94          2.834
LGA    P      95      P      95          3.000
LGA    S      96      S      96          3.329
LGA    E      97      E      97          3.546
LGA    L      98      L      98          2.368
LGA    R      99      R      99          5.027
LGA    L     100      L     100          3.633
LGA    G     101      G     101          2.129
LGA    I     102      I     102          0.992
LGA    V     103      V     103          2.013
LGA    T     104      T     104          1.385
LGA    S     105      S     105          2.274
LGA    Q     106      Q     106          3.171
LGA    R     107      R     107          3.697
LGA    R     108      R     108          3.977
LGA    N     109      N     109          2.282
LGA    E     110      E     110          1.105
LGA    L     111      L     111          1.925
LGA    E     112      E     112          4.216
LGA    S     113      S     113          4.229
LGA    G     114      G     114          3.245
LGA    M     115      M     115          4.138
LGA    R     116      R     116          3.479
LGA    S     117      S     117          3.215
LGA    Y     118      Y     118          2.061
LGA    P     119      P     119          2.709
LGA    F     120      F     120          2.105
LGA    M     121      M     121          4.503
LGA    M     122      M     122          0.679
LGA    R     123      R     123          3.678
LGA    M     124      M     124          2.771
LGA    A     125      A     125          3.032
LGA    V     126      V     126          4.368
LGA    T     127      T     127          2.403
LGA    I     128      I     128          2.324
LGA    S     129      S     129          2.600
LGA    A     130      A     130          3.024
LGA    D     131      D     131          6.015
LGA    D     132      D     132          7.075
LGA    T     133      T     133          6.047
LGA    P     134      P     134          7.593
LGA    K     135      K     135          7.955
LGA    R     136      R     136          4.307
LGA    K     137      K     137          2.921
LGA    P     138      P     138          2.952
LGA    D     139      D     139          2.081
LGA    P     140      P     140          3.762
LGA    L     141      L     141          2.115
LGA    P     142      P     142          1.981
LGA    L     143      L     143          2.752
LGA    L     144      L     144          2.311
LGA    T     145      T     145          1.714
LGA    A     146      A     146          2.403
LGA    L     147      L     147          2.532
LGA    E     148      E     148          2.082
LGA    K     149      K     149          2.177
LGA    V     150      V     150          2.917
LGA    N     151      N     151          2.937
LGA    V     152      V     152          2.553
LGA    A     153      A     153          3.275
LGA    P     154      P     154          2.705
LGA    Q     155      Q     155          3.927
LGA    N     156      N     156          2.395
LGA    A     157      A     157          2.390
LGA    L     158      L     158          2.016
LGA    F     159      F     159          1.664
LGA    I     160      I     160          2.227
LGA    G     161      G     161          1.834
LGA    D     162      D     162          2.973
LGA    S     163      S     163          3.195
LGA    V     164      V     164          1.733
LGA    S     165      S     165          0.945
LGA    D     166      D     166          2.088
LGA    E     167      E     167          2.472
LGA    Q     168      Q     168          1.661
LGA    T     169      T     169          0.555
LGA    A     170      A     170          2.228
LGA    Q     171      Q     171          3.164
LGA    A     172      A     172          2.515
LGA    A     173      A     173          1.610
LGA    N     174      N     174          2.738
LGA    V     175      V     175          2.088
LGA    D     176      D     176          1.038
LGA    F     177      F     177          1.074
LGA    G     178      G     178          0.966
LGA    L     179      L     179          0.906
LGA    A     180      A     180          2.214
LGA    V     181      V     181          5.174
LGA    W     182      W     182          3.045
LGA    G     183      G     183          1.637
LGA    M     184      M     184          3.973
LGA    D     185      D     185          2.065
LGA    P     186      P     186          1.954
LGA    N     187      N     187          5.216
LGA    A     188      A     188          5.646
LGA    D     189      D     189          3.961
LGA    H     190      H     190          4.807
LGA    Q     191      Q     191          4.270
LGA    K     192      K     192          1.040
LGA    V     193      V     193          0.304
LGA    A     194      A     194          3.957
LGA    H     195      H     195          2.213
LGA    R     196      R     196          3.449
LGA    F     197      F     197          3.276
LGA    Q     198      Q     198          3.422
LGA    K     199      K     199          4.031
LGA    P     200      P     200          7.227
LGA    L     201      L     201         12.830
LGA    D     202      D     202         13.272
LGA    I     203      I     203         14.375
LGA    L     204      L     204         18.887
LGA    E     205      E     205         21.825
LGA    L     206      L     206         24.400
LGA    F     207      F     207         26.799

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  142  142    4.0    107    2.55    55.106    51.143     4.039

LGA_LOCAL      RMSD =  2.549  Number of atoms =  107  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.666  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  5.525  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.484063 * X  +   0.114597 * Y  +  -0.867497 * Z  +  27.593765
  Y_new =  -0.817104 * X  +   0.295523 * Y  +   0.494982 * Z  +  18.652843
  Z_new =   0.313088 * X  +   0.948438 * Y  +  -0.049414 * Z  +  21.379175 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.622850   -1.518743  [ DEG:    92.9824    -87.0176 ]
  Theta =  -0.318443   -2.823149  [ DEG:   -18.2455   -161.7545 ]
  Phi   =  -2.105618    1.035974  [ DEG:  -120.6431     59.3570 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0324TS168_2-D1                               
REMARK     2: T0324_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0324TS168_2-D1.T0324_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  142  142   4.0  107   2.55  51.143     5.53
REMARK  ---------------------------------------------------------- 
MOLECULE T0324TS168_2-D1
PFRMAT TS
TARGET T0324
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1      35.202  29.677  47.210  1.00 25.00           C
ATOM      2  CA  THR     2      33.624  28.583  43.982  1.00 25.00           C
ATOM      3  CA  TYR     3      32.650  27.414  40.435  1.00 25.00           C
ATOM      4  CA  GLN     4      32.989  24.919  37.532  1.00 25.00           C
ATOM      5  CA  ALA     5      33.984  23.166  34.271  1.00 25.00           C
ATOM      6  CA  LEU     6      33.746  24.651  30.799  1.00 25.00           C
ATOM      7  CA  MET     7      30.714  25.385  28.610  1.00 25.00           C
ATOM      8  CA  PHE     8      29.173  25.315  25.107  1.00 25.00           C
ATOM      9  CA  ASP     9      26.378  23.437  23.349  1.00 25.00           C
ATOM     10  CA  ILE    10      26.838  19.994  21.712  1.00 25.00           C
ATOM     11  CA  ASP    11      25.582  21.951  18.685  1.00 25.00           C
ATOM     12  CA  GLY    12      28.574  24.252  18.228  1.00 25.00           C
ATOM     13  CA  THR    13      31.459  24.223  20.635  1.00 25.00           C
ATOM     14  CA  LEU    14      31.837  20.936  22.435  1.00 25.00           C
ATOM     15  CA  THR    15      32.126  18.125  19.886  1.00 25.00           C
ATOM     16  CA  ASN    16      30.931  18.745  16.327  1.00 25.00           C
ATOM     82  CA  GLU    82      40.304  19.688  15.161  1.00 25.00           C
ATOM     83  CA  LEU    83      37.761  20.355  17.891  1.00 25.00           C
ATOM     84  CA  TYR    84      36.077  23.373  16.263  1.00 25.00           C
ATOM     85  CA  PRO    85      39.698  24.685  16.243  1.00 25.00           C
ATOM     86  CA  GLY    86      38.744  26.473  19.504  1.00 25.00           C
ATOM     87  CA  ILE    87      36.811  24.396  22.052  1.00 25.00           C
ATOM     88  CA  THR    88      40.006  23.415  23.921  1.00 25.00           C
ATOM     89  CA  SER    89      41.157  27.069  23.920  1.00 25.00           C
ATOM     90  CA  LEU    90      37.751  28.169  25.282  1.00 25.00           C
ATOM     91  CA  PHE    91      37.972  25.521  28.041  1.00 25.00           C
ATOM     92  CA  GLU    92      41.491  26.728  28.952  1.00 25.00           C
ATOM     93  CA  GLN    93      40.237  30.343  29.107  1.00 25.00           C
ATOM     94  CA  LEU    94      37.343  29.268  31.373  1.00 25.00           C
ATOM     95  CA  PRO    95      39.792  27.414  33.661  1.00 25.00           C
ATOM     96  CA  SER    96      41.204  30.250  35.834  1.00 25.00           C
ATOM     97  CA  GLU    97      37.589  30.887  36.829  1.00 25.00           C
ATOM     98  CA  LEU    98      34.419  29.300  35.431  1.00 25.00           C
ATOM     99  CA  ARG    99      31.604  28.044  33.253  1.00 25.00           C
ATOM    100  CA  LEU   100      29.774  24.777  33.626  1.00 25.00           C
ATOM    101  CA  GLY   101      28.431  21.814  31.681  1.00 25.00           C
ATOM    102  CA  ILE   102      27.950  20.862  28.064  1.00 25.00           C
ATOM    103  CA  VAL   103      24.248  21.301  27.129  1.00 25.00           C
ATOM    104  CA  THR   104      24.358  17.729  25.732  1.00 25.00           C
ATOM    105  CA  SER   105      21.468  18.560  23.402  1.00 25.00           C
ATOM    106  CA  GLN   106      23.309  16.599  20.673  1.00 25.00           C
ATOM    107  CA  ARG   107      21.304  13.649  22.013  1.00 25.00           C
ATOM    108  CA  ARG   108      21.863  10.552  24.099  1.00 25.00           C
ATOM    109  CA  ASN   109      24.480   7.850  24.820  1.00 25.00           C
ATOM    110  CA  GLU   110      26.369   8.792  21.625  1.00 25.00           C
ATOM    111  CA  LEU   111      26.301  12.483  22.644  1.00 25.00           C
ATOM    112  CA  GLU   112      27.640  11.575  26.116  1.00 25.00           C
ATOM    113  CA  SER   113      30.448   9.516  24.520  1.00 25.00           C
ATOM    114  CA  GLY   114      31.338  12.455  22.234  1.00 25.00           C
ATOM    115  CA  MET   115      31.426  14.810  25.252  1.00 25.00           C
ATOM    116  CA  ARG   116      33.709  12.368  27.122  1.00 25.00           C
ATOM    117  CA  SER   117      36.033  12.177  24.084  1.00 25.00           C
ATOM    118  CA  TYR   118      36.653  15.337  21.965  1.00 25.00           C
ATOM    119  CA  PRO   119      40.361  15.013  22.715  1.00 25.00           C
ATOM    120  CA  PHE   120      39.902  18.427  24.336  1.00 25.00           C
ATOM    121  CA  MET   121      41.166  16.626  27.501  1.00 25.00           C
ATOM    122  CA  MET   122      39.026  16.078  30.608  1.00 25.00           C
ATOM    123  CA  ARG   123      36.143  18.061  29.159  1.00 25.00           C
ATOM    124  CA  MET   124      33.051  20.159  29.793  1.00 25.00           C
ATOM    125  CA  ALA   125      31.867  18.388  32.930  1.00 25.00           C
ATOM    126  CA  VAL   126      30.115  16.525  30.145  1.00 25.00           C
ATOM    127  CA  THR   127      26.302  16.561  30.084  1.00 25.00           C
ATOM    128  CA  ILE   128      23.324  14.270  30.459  1.00 25.00           C
ATOM    129  CA  SER   129      20.682  14.689  27.686  1.00 25.00           C
ATOM    130  CA  ALA   130      18.463  12.964  30.228  1.00 25.00           C
ATOM    131  CA  ASP   131      17.906  13.318  34.013  1.00 25.00           C
ATOM    132  CA  ASP   132      14.869  15.425  32.958  1.00 25.00           C
ATOM    133  CA  THR   133      14.504  16.081  29.262  1.00 25.00           C
ATOM    134  CA  PRO   134      11.569  16.288  26.807  1.00 25.00           C
ATOM    135  CA  LYS   135      13.074  16.289  23.350  1.00 25.00           C
ATOM    136  CA  ARG   136      16.595  15.863  24.679  1.00 25.00           C
ATOM    137  CA  LYS   137      16.677  19.674  24.913  1.00 25.00           C
ATOM    138  CA  PRO   138      13.296  21.444  25.302  1.00 25.00           C
ATOM    139  CA  ASP   139      14.063  21.735  29.043  1.00 25.00           C
ATOM    140  CA  PRO   140      17.558  22.603  30.278  1.00 25.00           C
ATOM    141  CA  LEU   141      16.866  20.013  33.012  1.00 25.00           C
ATOM    142  CA  PRO   142      19.734  17.834  31.709  1.00 25.00           C
ATOM    143  CA  LEU   143      22.076  20.865  31.729  1.00 25.00           C
ATOM    144  CA  LEU   144      21.042  21.673  35.325  1.00 25.00           C
ATOM    145  CA  THR   145      21.704  18.045  36.358  1.00 25.00           C
ATOM    146  CA  ALA   146      25.155  18.179  34.703  1.00 25.00           C
ATOM    147  CA  LEU   147      25.939  21.444  36.546  1.00 25.00           C
ATOM    148  CA  GLU   148      24.862  19.858  39.862  1.00 25.00           C
ATOM    149  CA  LYS   149      27.099  16.827  39.169  1.00 25.00           C
ATOM    150  CA  VAL   150      30.046  19.148  38.394  1.00 25.00           C
ATOM    151  CA  ASN   151      29.583  21.416  41.433  1.00 25.00           C
ATOM    152  CA  VAL   152      28.452  24.756  39.861  1.00 25.00           C
ATOM    153  CA  ALA   153      25.180  25.360  41.736  1.00 25.00           C
ATOM    154  CA  PRO   154      23.831  27.362  38.773  1.00 25.00           C
ATOM    155  CA  GLN   155      25.669  30.322  40.364  1.00 25.00           C
ATOM    156  CA  ASN   156      27.056  31.332  36.940  1.00 25.00           C
ATOM    157  CA  ALA   157      26.700  28.868  34.065  1.00 25.00           C
ATOM    158  CA  LEU   158      26.697  30.098  30.466  1.00 25.00           C
ATOM    159  CA  PHE   159      24.653  27.386  28.821  1.00 25.00           C
ATOM    160  CA  ILE   160      24.823  28.174  25.148  1.00 25.00           C
ATOM    161  CA  GLY   161      24.611  27.740  21.327  1.00 25.00           C
ATOM    162  CA  ASP   162      21.968  26.315  19.062  1.00 25.00           C
ATOM    163  CA  SER   163      18.434  24.924  19.186  1.00 25.00           C
ATOM    164  CA  VAL   164      16.530  28.049  20.278  1.00 25.00           C
ATOM    165  CA  SER   165      14.663  25.890  22.831  1.00 25.00           C
ATOM    166  CA  ASP   166      17.987  24.860  24.429  1.00 25.00           C
ATOM    167  CA  GLU   167      19.058  28.533  24.627  1.00 25.00           C
ATOM    168  CA  GLN   168      15.718  29.442  26.268  1.00 25.00           C
ATOM    169  CA  THR   169      16.165  26.610  28.806  1.00 25.00           C
ATOM    170  CA  ALA   170      19.706  27.839  29.592  1.00 25.00           C
ATOM    171  CA  GLN   171      18.387  31.400  30.087  1.00 25.00           C
ATOM    172  CA  ALA   172      15.661  30.090  32.437  1.00 25.00           C
ATOM    173  CA  ALA   173      17.832  27.672  34.280  1.00 25.00           C
ATOM    174  CA  ASN   174      19.730  30.401  36.077  1.00 25.00           C
ATOM    175  CA  VAL   175      22.226  30.549  33.241  1.00 25.00           C
ATOM    176  CA  ASP   176      21.683  34.338  33.007  1.00 25.00           C
ATOM    177  CA  PHE   177      22.754  33.763  29.414  1.00 25.00           C
ATOM    178  CA  GLY   178      24.856  33.087  26.317  1.00 25.00           C
ATOM    179  CA  LEU   179      24.772  32.695  22.589  1.00 25.00           C
ATOM    180  CA  ALA   180      28.322  31.510  22.264  1.00 25.00           C
ATOM    181  CA  VAL   181      30.715  31.654  19.314  1.00 25.00           C
ATOM    182  CA  TRP   182      27.724  30.305  17.396  1.00 25.00           C
ATOM    183  CA  GLY   183      25.024  28.350  15.542  1.00 25.00           C
ATOM    184  CA  MET   184      22.522  30.984  16.466  1.00 25.00           C
ATOM    185  CA  ASP   185      18.993  30.537  15.145  1.00 25.00           C
ATOM    186  CA  PRO   186      17.179  33.830  14.358  1.00 25.00           C
ATOM    187  CA  ASN   187      18.789  37.040  15.741  1.00 25.00           C
ATOM    188  CA  ALA   188      15.872  37.706  18.132  1.00 25.00           C
ATOM    189  CA  ASP   189      17.197  35.031  20.532  1.00 25.00           C
ATOM    190  CA  HIS   190      20.685  36.610  20.406  1.00 25.00           C
ATOM    191  CA  GLN   191      19.180  40.052  21.148  1.00 25.00           C
ATOM    192  CA  LYS   192      17.246  38.594  24.116  1.00 25.00           C
ATOM    193  CA  VAL   193      20.297  37.537  26.124  1.00 25.00           C
ATOM    194  CA  ALA   194      21.953  40.958  26.080  1.00 25.00           C
ATOM    195  CA  HIS   195      24.940  39.041  24.798  1.00 25.00           C
ATOM    196  CA  ARG   196      24.429  40.089  21.187  1.00 25.00           C
ATOM    197  CA  PHE   197      26.783  37.193  20.453  1.00 25.00           C
ATOM    198  CA  GLN   198      29.091  39.872  19.090  1.00 25.00           C
ATOM    199  CA  LYS   199      32.473  38.418  18.175  1.00 25.00           C
ATOM    200  CA  PRO   200      30.311  35.883  16.249  1.00 25.00           C
ATOM    201  CA  LEU   201      28.786  38.163  13.576  1.00 25.00           C
ATOM    202  CA  ASP   202      29.672  35.611  10.860  1.00 25.00           C
ATOM    203  CA  ILE   203      28.056  32.818  12.923  1.00 25.00           C
ATOM    204  CA  LEU   204      24.899  34.940  13.368  1.00 25.00           C
ATOM    205  CA  GLU   205      24.778  35.596   9.597  1.00 25.00           C
ATOM    206  CA  LEU   206      25.145  31.846   8.908  1.00 25.00           C
ATOM    207  CA  PHE   207      22.305  31.093  11.365  1.00 25.00           C
TER
END
