
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  142 (  142),  selected  142 , name T0324TS168_1-D1
# Molecule2: number of CA atoms  142 ( 1080),  selected  142 , name T0324_D1.pdb
# PARAMETERS: T0324TS168_1-D1.T0324_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   141         1 - 206         4.65     5.09
  LCS_AVERAGE:     99.29

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    54       120 - 173         1.99     5.27
  LCS_AVERAGE:     21.36

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    13       140 - 152         0.98     8.76
  LONGEST_CONTINUOUS_SEGMENT:    13       162 - 174         0.98     7.43
  LCS_AVERAGE:      5.27

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  142
LCS_GDT     M       1     M       1      5    6  141     2    4    5    9   17   21   29   62   97  115  126  130  133  134  134  134  134  136  137  138 
LCS_GDT     T       2     T       2      5    6  141     4    4    5    7   11   21   68   80  102  119  125  130  133  134  134  134  134  136  137  138 
LCS_GDT     Y       3     Y       3      5   11  141     4    7    8   20   39   65   89  112  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Q       4     Q       4      5   12  141     4    7   29   51   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A       5     A       5      7   12  141     4   11   26   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L       6     L       6      7   12  141     3    7   22   44   75   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     M       7     M       7      7   12  141     3    7   20   44   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     F       8     F       8      7   12  141     3    9   23   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     D       9     D       9      7   12  141     3    6   19   42   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     I      10     I      10      7   12  141     3    8   19   43   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     D      11     D      11      7   12  141     3    8   23   48   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     G      12     G      12      5   12  141     3    8   26   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     T      13     T      13      5   12  141     3    9   31   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L      14     L      14      5   12  141     3    8   23   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     T      15     T      15      5   12  141     3    5    9   21   37   72   97  112  118  122  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     N      16     N      16      5   14  141     3    5    9   11   16   35   56   84  107  119  125  129  133  134  134  134  135  136  137  138 
LCS_GDT     E      82     E      82      3   17  141     0    3   11   13   39   60   75   96  112  122  127  129  133  134  134  134  135  136  137  138 
LCS_GDT     L      83     L      83      3   17  141     3    9   21   41   64   91  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Y      84     Y      84     10   17  141     5   15   33   54   77   95  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P      85     P      85     10   17  141     6   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     G      86     G      86     10   17  141     3    9   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     I      87     I      87     10   17  141     7   11   26   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     T      88     T      88     10   17  141     7   10   23   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     S      89     S      89     10   17  141     7   10   22   45   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L      90     L      90     10   17  141     7   10   22   45   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     F      91     F      91     10   17  141     7   11   26   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     E      92     E      92     10   17  141     7   10   22   50   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Q      93     Q      93     10   17  141     7   10   21   39   69   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L      94     L      94      9   17  141     6   10   22   45   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P      95     P      95      4   17  141     4    9   22   41   62   93  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     S      96     S      96      4   17  141     4   14   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     E      97     E      97      5   17  141     3    6   27   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L      98     L      98      5   17  141     3    8   27   50   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     R      99     R      99      5   17  141     3    6   14   35   60   89  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L     100     L     100      5   14  141     3    9   19   37   64   93  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     G     101     G     101      5   14  141     4    9   14   31   53   74  100  112  117  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     I     102     I     102      5   14  141     3   10   24   43   74   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     V     103     V     103      5   14  141     3    6   26   49   74   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     T     104     T     104      5   14  141     3   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     S     105     S     105      4   14  141     3   15   24   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Q     106     Q     106      9   14  141     3    8   19   34   72   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     R     107     R     107      9   14  141     8   15   24   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     R     108     R     108      9   14  141     8   15   24   52   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     N     109     N     109      9   14  141     8   15   24   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     E     110     E     110      9   14  141     8    9   19   37   73   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L     111     L     111      9   14  141     8    9   19   33   70   92  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     E     112     E     112      9   14  141     8    9   21   44   74   94  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     S     113     S     113      9   14  141     8    9   11   33   56   91  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     G     114     G     114      9   13  141     8    9   10   16   34   49   81   94  112  122  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     M     115     M     115      9   13  141     4    9   11   21   38   61   82  104  114  122  127  129  133  134  134  134  135  136  137  138 
LCS_GDT     R     116     R     116      5   13  141     5   15   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     S     117     S     117      3   13  141     3    3    7   34   73   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Y     118     Y     118      4    8  141     3   12   27   45   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P     119     P     119      4    8  141     3    7   25   43   74   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     F     120     F     120      6   54  141     4    9   27   44   74   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     M     121     M     121      6   54  141     4   10   13   41   64   92  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     M     122     M     122      6   54  141     4    8   23   43   64   93  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     R     123     R     123      6   54  141     4    8   22   44   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     M     124     M     124      6   54  141     5   12   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     125     A     125      6   54  141     4   10   29   48   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     V     126     V     126      4   54  141     5   15   28   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     T     127     T     127      4   54  141     3    4   11   22   46   75  105  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     I     128     I     128      4   54  141     3   10   24   44   74   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     S     129     S     129      4   54  141     3   10   19   37   70   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     130     A     130      6   54  141     2   10   24   51   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     D     131     D     131      6   54  141     4   15   25   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     D     132     D     132      6   54  141     3   10   14   32   72   93  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     T     133     T     133      6   54  141     3   12   28   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P     134     P     134      6   54  141     3   14   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     K     135     K     135      6   54  141     3   14   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     R     136     R     136      5   54  141     3   10   28   50   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     K     137     K     137      5   54  141     3   10   25   49   76   95  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P     138     P     138      5   54  141     3   11   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     D     139     D     139     12   54  141     4   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P     140     P     140     13   54  141     5   11   13   17   46   69   94  109  117  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L     141     L     141     13   54  141     9   16   30   51   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P     142     P     142     13   54  141     9   11   23   49   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L     143     L     143     13   54  141     9   11   25   44   73   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L     144     L     144     13   54  141     9   13   33   53   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     T     145     T     145     13   54  141     9   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     146     A     146     13   54  141     9   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L     147     L     147     13   54  141     9   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     E     148     E     148     13   54  141     9   15   28   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     K     149     K     149     13   54  141     9   15   28   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     V     150     V     150     13   54  141     8   15   28   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     N     151     N     151     13   54  141     6   16   31   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     V     152     V     152     13   54  141     6   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     153     A     153      7   54  141     3   14   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P     154     P     154      8   54  141     4   12   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Q     155     Q     155      8   54  141     4   14   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     N     156     N     156      8   54  141     5   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     157     A     157      8   54  141     5   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L     158     L     158      8   54  141     3   15   24   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     F     159     F     159      8   54  141     3    9   22   42   71   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     I     160     I     160      8   54  141     3   15   29   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     G     161     G     161      9   54  141     4   15   31   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     D     162     D     162     13   54  141     3   14   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     S     163     S     163     13   54  141     6   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     V     164     V     164     13   54  141     9   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     S     165     S     165     13   54  141     9   14   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     D     166     D     166     13   54  141     9   11   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     E     167     E     167     13   54  141     9   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Q     168     Q     168     13   54  141     9   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     T     169     T     169     13   54  141     9   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     170     A     170     13   54  141     9   16   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Q     171     Q     171     13   54  141     9   14   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     172     A     172     13   54  141     9   15   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     173     A     173     13   54  141     3   11   33   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     N     174     N     174     13   53  141     3    8   24   42   75   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     V     175     V     175     11   53  141     3    7   21   40   61   88  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     D     176     D     176      5   50  141     3    9   21   41   67   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     F     177     F     177      5   50  141     4    9   23   51   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     G     178     G     178      5   50  141     3    4    9   27   52   91  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     L     179     L     179      5   50  141     4    9   24   54   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     180     A     180      5   49  141     3    8   21   43   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     V     181     V     181      5   48  141     3    4   10   17   34   72   95  112  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     W     182     W     182      3   48  141     3    5   20   42   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     G     183     G     183      4    8  141     3    6   17   38   60   96  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     M     184     M     184      4    5  141     3    7   10   13   14   47   63   90  113  122  126  130  133  134  134  134  135  136  137  138 
LCS_GDT     D     185     D     185      4    5  141     3    5    9   19   35   56   74   98  115  121  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P     186     P     186      4    5  141     3    6   11   25   41   61   85  103  116  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     N     187     N     187      5    6  141     4    6   12   25   47   74  105  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     188     A     188      5    6  141     4    5    5    6    6   28   44   56   98  120  124  128  132  134  134  134  135  136  137  138 
LCS_GDT     D     189     D     189      5    6  141     4    7   10   12   17   35   58   86  107  121  126  130  133  134  134  134  135  136  137  138 
LCS_GDT     H     190     H     190      5    6  141     4    5    5    7   15   65   89  112  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Q     191     Q     191      5    6  141     4    5   11   21   42   72  102  112  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     K     192     K     192      3    8  141     3    8   23   48   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     V     193     V     193      5    8  141     3   10   22   46   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     A     194     A     194      5    8  141     3   10   21   50   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     H     195     H     195      5    8  141     3    9   21   39   72   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     R     196     R     196      5    8  141     3    8   23   48   77   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     F     197     F     197      5    8  141     3    8   20   40   65   97  106  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     Q     198     Q     198      3    8  141     3    3   10   25   39   61   82  101  118  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     K     199     K     199      6    9  141     4    6   18   38   59   88  104  114  119  123  127  130  133  134  134  134  135  136  137  138 
LCS_GDT     P     200     P     200      6    9  141     4    6    8    9   10   12   13   25   40   72   79  101  116  127  130  132  135  136  137  138 
LCS_GDT     L     201     L     201      6    9  141     4    6    8    9   10   12   13   23   52   57   86   98  110  119  128  131  135  135  137  138 
LCS_GDT     D     202     D     202      6    9  141     4    6    8    9   17   35   51   68   88  104  114  119  124  126  132  133  135  136  137  138 
LCS_GDT     I     203     I     203      6    9  141     3    6    8    9   12   15   19   21   24   34   36   84  109  115  117  123  131  133  136  138 
LCS_GDT     L     204     L     204      6    9  141     3    4    8    9   10   12   14   16   16   22   30   32   47   54   85   94  100  105  106  111 
LCS_GDT     E     205     E     205      6    9  141     3    4    8    9   10   12   13   14   15   16   18   25   26   29   56   94  100  105  106  111 
LCS_GDT     L     206     L     206      6    9  141     3    4    8    9   10   12   13   14   15   16   18   18   19   21   22   24   26   50   56   64 
LCS_GDT     F     207     F     207      6    9  140     3    4    7    8   10   12   13   14   15   16   18   18   19   21   22   24   26   27   28   29 
LCS_AVERAGE  LCS_A:  41.97  (   5.27   21.36   99.29 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA      9     16     33     54     77     97    106    114    119    123    127    130    133    134    134    134    135    136    137    138 
GDT PERCENT_CA   6.34  11.27  23.24  38.03  54.23  68.31  74.65  80.28  83.80  86.62  89.44  91.55  93.66  94.37  94.37  94.37  95.07  95.77  96.48  97.18
GDT RMS_LOCAL    0.16   0.75   1.18   1.55   1.88   2.14   2.26   2.42   2.59   2.73   2.87   3.07   3.18   3.23   3.23   3.23   3.45   3.43   3.57   3.72
GDT RMS_ALL_CA   7.61   5.33   5.39   5.28   5.18   5.14   5.14   5.13   5.17   5.19   5.22   5.26   5.27   5.28   5.28   5.28   5.16   5.22   5.20   5.17

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          8.892
LGA    T       2      T       2          8.117
LGA    Y       3      Y       3          5.226
LGA    Q       4      Q       4          2.953
LGA    A       5      A       5          1.758
LGA    L       6      L       6          2.735
LGA    M       7      M       7          2.529
LGA    F       8      F       8          1.658
LGA    D       9      D       9          2.305
LGA    I      10      I      10          2.122
LGA    D      11      D      11          1.734
LGA    G      12      G      12          2.255
LGA    T      13      T      13          1.679
LGA    L      14      L      14          2.071
LGA    T      15      T      15          5.050
LGA    N      16      N      16          6.788
LGA    E      82      E      82          6.327
LGA    L      83      L      83          3.819
LGA    Y      84      Y      84          3.437
LGA    P      85      P      85          2.096
LGA    G      86      G      86          2.649
LGA    I      87      I      87          1.150
LGA    T      88      T      88          1.438
LGA    S      89      S      89          2.073
LGA    L      90      L      90          2.052
LGA    F      91      F      91          1.253
LGA    E      92      E      92          2.052
LGA    Q      93      Q      93          2.867
LGA    L      94      L      94          2.600
LGA    P      95      P      95          3.974
LGA    S      96      S      96          1.518
LGA    E      97      E      97          1.863
LGA    L      98      L      98          2.197
LGA    R      99      R      99          3.953
LGA    L     100      L     100          3.799
LGA    G     101      G     101          4.641
LGA    I     102      I     102          2.908
LGA    V     103      V     103          2.932
LGA    T     104      T     104          2.000
LGA    S     105      S     105          1.452
LGA    Q     106      Q     106          2.998
LGA    R     107      R     107          1.796
LGA    R     108      R     108          2.452
LGA    N     109      N     109          1.955
LGA    E     110      E     110          2.939
LGA    L     111      L     111          3.689
LGA    E     112      E     112          3.466
LGA    S     113      S     113          3.710
LGA    G     114      G     114          5.800
LGA    M     115      M     115          6.167
LGA    R     116      R     116          2.351
LGA    S     117      S     117          2.661
LGA    Y     118      Y     118          2.660
LGA    P     119      P     119          2.789
LGA    F     120      F     120          3.048
LGA    M     121      M     121          3.367
LGA    M     122      M     122          3.720
LGA    R     123      R     123          2.352
LGA    M     124      M     124          1.773
LGA    A     125      A     125          2.374
LGA    V     126      V     126          1.625
LGA    T     127      T     127          3.922
LGA    I     128      I     128          2.637
LGA    S     129      S     129          3.004
LGA    A     130      A     130          2.242
LGA    D     131      D     131          2.089
LGA    D     132      D     132          3.396
LGA    T     133      T     133          1.686
LGA    P     134      P     134          1.365
LGA    K     135      K     135          1.778
LGA    R     136      R     136          2.637
LGA    K     137      K     137          3.106
LGA    P     138      P     138          1.898
LGA    D     139      D     139          1.698
LGA    P     140      P     140          5.264
LGA    L     141      L     141          2.279
LGA    P     142      P     142          2.408
LGA    L     143      L     143          2.975
LGA    L     144      L     144          2.334
LGA    T     145      T     145          0.803
LGA    A     146      A     146          0.761
LGA    L     147      L     147          2.035
LGA    E     148      E     148          2.802
LGA    K     149      K     149          2.450
LGA    V     150      V     150          2.256
LGA    N     151      N     151          1.942
LGA    V     152      V     152          1.693
LGA    A     153      A     153          0.128
LGA    P     154      P     154          1.711
LGA    Q     155      Q     155          1.369
LGA    N     156      N     156          1.865
LGA    A     157      A     157          2.241
LGA    L     158      L     158          2.590
LGA    F     159      F     159          2.994
LGA    I     160      I     160          2.366
LGA    G     161      G     161          1.537
LGA    D     162      D     162          2.630
LGA    S     163      S     163          1.730
LGA    V     164      V     164          2.645
LGA    S     165      S     165          1.834
LGA    D     166      D     166          2.619
LGA    E     167      E     167          2.821
LGA    Q     168      Q     168          1.951
LGA    T     169      T     169          1.526
LGA    A     170      A     170          2.729
LGA    Q     171      Q     171          2.903
LGA    A     172      A     172          2.180
LGA    A     173      A     173          1.513
LGA    N     174      N     174          2.500
LGA    V     175      V     175          3.504
LGA    D     176      D     176          2.846
LGA    F     177      F     177          1.348
LGA    G     178      G     178          3.837
LGA    L     179      L     179          0.832
LGA    A     180      A     180          1.985
LGA    V     181      V     181          4.973
LGA    W     182      W     182          2.325
LGA    G     183      G     183          3.170
LGA    M     184      M     184          6.173
LGA    D     185      D     185          6.190
LGA    P     186      P     186          5.783
LGA    N     187      N     187          4.366
LGA    A     188      A     188          7.098
LGA    D     189      D     189          6.353
LGA    H     190      H     190          4.836
LGA    Q     191      Q     191          4.698
LGA    K     192      K     192          1.178
LGA    V     193      V     193          1.806
LGA    A     194      A     194          1.834
LGA    H     195      H     195          2.860
LGA    R     196      R     196          1.878
LGA    F     197      F     197          2.765
LGA    Q     198      Q     198          5.350
LGA    K     199      K     199          3.820
LGA    P     200      P     200          9.834
LGA    L     201      L     201         11.682
LGA    D     202      D     202          9.711
LGA    I     203      I     203         12.618
LGA    L     204      L     204         18.898
LGA    E     205      E     205         19.897
LGA    L     206      L     206         21.499
LGA    F     207      F     207         26.153

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  142  142    4.0    114    2.42    55.986    53.059     4.518

LGA_LOCAL      RMSD =  2.423  Number of atoms =  114  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.178  Number of atoms =  142 
Std_ALL_ATOMS  RMSD =  5.079  (standard rmsd on all 142 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.434612 * X  +  -0.793781 * Y  +  -0.425470 * Z  +  25.835514
  Y_new =   0.548338 * X  +  -0.141544 * Y  +   0.824191 * Z  +  21.178045
  Z_new =  -0.714449 * X  +  -0.591504 * Y  +   0.373744 * Z  +  20.509457 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.007284    2.134309  [ DEG:   -57.7131    122.2869 ]
  Theta =   0.795837    2.345756  [ DEG:    45.5981    134.4019 ]
  Phi   =   0.900585   -2.241007  [ DEG:    51.5997   -128.4003 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0324TS168_1-D1                               
REMARK     2: T0324_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0324TS168_1-D1.T0324_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  142  142   4.0  114   2.42  53.059     5.08
REMARK  ---------------------------------------------------------- 
MOLECULE T0324TS168_1-D1
PFRMAT TS
TARGET T0324
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      37.587  34.103  43.763  1.00 25.00           C
ATOM      2  CA  THR     2      35.497  31.723  41.662  1.00 25.00           C
ATOM      3  CA  TYR     3      33.551  29.875  38.933  1.00 25.00           C
ATOM      4  CA  GLN     4      31.744  30.050  35.559  1.00 25.00           C
ATOM      5  CA  ALA     5      29.441  27.041  35.412  1.00 25.00           C
ATOM      6  CA  LEU     6      28.113  26.395  31.917  1.00 25.00           C
ATOM      7  CA  MET     7      25.898  24.359  29.647  1.00 25.00           C
ATOM      8  CA  PHE     8      26.671  24.953  25.982  1.00 25.00           C
ATOM      9  CA  ASP     9      23.711  22.557  25.373  1.00 25.00           C
ATOM     10  CA  ILE    10      25.520  21.798  22.079  1.00 25.00           C
ATOM     11  CA  ASP    11      23.983  21.383  18.664  1.00 25.00           C
ATOM     12  CA  GLY    12      27.225  23.230  17.875  1.00 25.00           C
ATOM     13  CA  THR    13      29.555  25.205  20.131  1.00 25.00           C
ATOM     14  CA  LEU    14      32.414  23.121  21.587  1.00 25.00           C
ATOM     15  CA  THR    15      32.253  19.415  21.095  1.00 25.00           C
ATOM     16  CA  ASN    16      30.118  18.048  18.326  1.00 25.00           C
ATOM     82  CA  GLU    82      40.651  20.318  14.835  1.00 25.00           C
ATOM     83  CA  LEU    83      38.248  21.082  17.635  1.00 25.00           C
ATOM     84  CA  TYR    84      36.037  22.617  14.944  1.00 25.00           C
ATOM     85  CA  PRO    85      38.269  25.568  14.058  1.00 25.00           C
ATOM     86  CA  GLY    86      38.423  26.519  17.689  1.00 25.00           C
ATOM     87  CA  ILE    87      36.894  25.863  21.157  1.00 25.00           C
ATOM     88  CA  THR    88      40.462  25.095  22.315  1.00 25.00           C
ATOM     89  CA  SER    89      41.000  28.786  23.184  1.00 25.00           C
ATOM     90  CA  LEU    90      37.725  28.821  25.168  1.00 25.00           C
ATOM     91  CA  PHE    91      38.805  25.669  27.054  1.00 25.00           C
ATOM     92  CA  GLU    92      42.185  27.278  27.860  1.00 25.00           C
ATOM     93  CA  GLN    93      40.411  30.422  29.138  1.00 25.00           C
ATOM     94  CA  LEU    94      38.127  28.270  31.333  1.00 25.00           C
ATOM     95  CA  PRO    95      41.175  26.424  32.737  1.00 25.00           C
ATOM     96  CA  SER    96      41.473  25.813  36.506  1.00 25.00           C
ATOM     97  CA  GLU    97      38.058  27.448  37.190  1.00 25.00           C
ATOM     98  CA  LEU    98      34.964  26.109  35.492  1.00 25.00           C
ATOM     99  CA  ARG    99      34.086  23.501  32.785  1.00 25.00           C
ATOM    100  CA  LEU   100      34.102  25.834  29.742  1.00 25.00           C
ATOM    101  CA  GLY   101      31.572  23.914  27.752  1.00 25.00           C
ATOM    102  CA  ILE   102      29.648  20.881  26.375  1.00 25.00           C
ATOM    103  CA  VAL   103      26.412  18.998  27.036  1.00 25.00           C
ATOM    104  CA  THR   104      24.117  16.972  24.775  1.00 25.00           C
ATOM    105  CA  SER   105      20.551  18.117  24.799  1.00 25.00           C
ATOM    106  CA  GLN   106      19.688  14.667  23.501  1.00 25.00           C
ATOM    107  CA  ARG   107      21.389  11.749  25.308  1.00 25.00           C
ATOM    108  CA  ARG   108      23.285   9.620  27.853  1.00 25.00           C
ATOM    109  CA  ASN   109      25.284   7.840  25.115  1.00 25.00           C
ATOM    110  CA  GLU   110      26.013  11.201  23.428  1.00 25.00           C
ATOM    111  CA  LEU   111      27.179  12.655  26.773  1.00 25.00           C
ATOM    112  CA  GLU   112      29.464   9.630  27.320  1.00 25.00           C
ATOM    113  CA  SER   113      30.924  10.068  23.806  1.00 25.00           C
ATOM    114  CA  GLY   114      31.550  13.781  24.501  1.00 25.00           C
ATOM    115  CA  MET   115      33.292  12.896  27.795  1.00 25.00           C
ATOM    116  CA  ARG   116      35.480  10.331  25.977  1.00 25.00           C
ATOM    117  CA  SER   117      36.397  12.948  23.336  1.00 25.00           C
ATOM    118  CA  TYR   118      38.266  13.977  20.118  1.00 25.00           C
ATOM    119  CA  PRO   119      41.075  15.707  22.029  1.00 25.00           C
ATOM    120  CA  PHE   120      38.313  17.597  23.841  1.00 25.00           C
ATOM    121  CA  MET   121      39.930  16.226  26.974  1.00 25.00           C
ATOM    122  CA  MET   122      40.816  19.478  28.769  1.00 25.00           C
ATOM    123  CA  ARG   123      37.096  19.715  29.453  1.00 25.00           C
ATOM    124  CA  MET   124      34.384  17.586  31.099  1.00 25.00           C
ATOM    125  CA  ALA   125      33.216  16.735  34.669  1.00 25.00           C
ATOM    126  CA  VAL   126      30.248  19.157  34.932  1.00 25.00           C
ATOM    127  CA  THR   127      29.415  20.184  31.355  1.00 25.00           C
ATOM    128  CA  ILE   128      26.897  17.298  31.659  1.00 25.00           C
ATOM    129  CA  SER   129      23.519  16.502  30.099  1.00 25.00           C
ATOM    130  CA  ALA   130      20.353  14.734  28.925  1.00 25.00           C
ATOM    131  CA  ASP   131      19.723  11.560  30.869  1.00 25.00           C
ATOM    132  CA  ASP   132      17.960  11.092  34.160  1.00 25.00           C
ATOM    133  CA  THR   133      16.399  14.542  33.991  1.00 25.00           C
ATOM    134  CA  PRO   134      13.673  13.162  31.779  1.00 25.00           C
ATOM    135  CA  LYS   135      13.852  16.349  29.637  1.00 25.00           C
ATOM    136  CA  ARG   136      15.596  15.981  26.239  1.00 25.00           C
ATOM    137  CA  LYS   137      15.585  19.411  24.594  1.00 25.00           C
ATOM    138  CA  PRO   138      13.457  21.826  26.673  1.00 25.00           C
ATOM    139  CA  ASP   139      14.164  21.209  30.367  1.00 25.00           C
ATOM    140  CA  PRO   140      17.828  20.610  29.683  1.00 25.00           C
ATOM    141  CA  LEU   141      17.172  19.353  33.241  1.00 25.00           C
ATOM    142  CA  PRO   142      20.468  17.403  33.186  1.00 25.00           C
ATOM    143  CA  LEU   143      22.325  20.530  31.987  1.00 25.00           C
ATOM    144  CA  LEU   144      20.730  22.585  34.797  1.00 25.00           C
ATOM    145  CA  THR   145      21.772  19.937  37.360  1.00 25.00           C
ATOM    146  CA  ALA   146      25.351  19.993  35.999  1.00 25.00           C
ATOM    147  CA  LEU   147      25.412  23.814  36.249  1.00 25.00           C
ATOM    148  CA  GLU   148      24.157  23.622  39.863  1.00 25.00           C
ATOM    149  CA  LYS   149      26.878  21.061  40.698  1.00 25.00           C
ATOM    150  CA  VAL   150      29.534  23.334  39.134  1.00 25.00           C
ATOM    151  CA  ASN   151      29.031  24.797  42.663  1.00 25.00           C
ATOM    152  CA  VAL   152      27.988  27.920  40.769  1.00 25.00           C
ATOM    153  CA  ALA   153      24.412  28.599  41.886  1.00 25.00           C
ATOM    154  CA  PRO   154      23.679  28.946  38.118  1.00 25.00           C
ATOM    155  CA  GLN   155      24.173  32.705  38.656  1.00 25.00           C
ATOM    156  CA  ASN   156      27.787  32.433  37.417  1.00 25.00           C
ATOM    157  CA  ALA   157      27.498  31.020  33.889  1.00 25.00           C
ATOM    158  CA  LEU   158      27.758  32.944  30.639  1.00 25.00           C
ATOM    159  CA  PHE   159      27.223  30.129  28.160  1.00 25.00           C
ATOM    160  CA  ILE   160      28.273  29.272  24.619  1.00 25.00           C
ATOM    161  CA  GLY   161      25.705  28.153  22.079  1.00 25.00           C
ATOM    162  CA  ASP   162      23.331  26.494  19.597  1.00 25.00           C
ATOM    163  CA  SER   163      19.679  26.921  18.742  1.00 25.00           C
ATOM    164  CA  VAL   164      15.918  27.419  19.420  1.00 25.00           C
ATOM    165  CA  SER   165      14.757  24.853  22.015  1.00 25.00           C
ATOM    166  CA  ASP   166      18.301  24.670  23.457  1.00 25.00           C
ATOM    167  CA  GLU   167      18.438  28.492  23.668  1.00 25.00           C
ATOM    168  CA  GLN   168      15.052  28.540  25.459  1.00 25.00           C
ATOM    169  CA  THR   169      16.297  25.894  27.932  1.00 25.00           C
ATOM    170  CA  ALA   170      19.456  27.958  28.590  1.00 25.00           C
ATOM    171  CA  GLN   171      17.320  31.079  29.194  1.00 25.00           C
ATOM    172  CA  ALA   172      15.110  29.123  31.634  1.00 25.00           C
ATOM    173  CA  ALA   173      16.234  26.849  34.451  1.00 25.00           C
ATOM    174  CA  ASN   174      18.280  29.437  36.421  1.00 25.00           C
ATOM    175  CA  VAL   175      21.232  27.857  34.532  1.00 25.00           C
ATOM    176  CA  ASP   176      21.904  31.293  33.132  1.00 25.00           C
ATOM    177  CA  PHE   177      22.780  32.112  29.492  1.00 25.00           C
ATOM    178  CA  GLY   178      22.265  31.892  25.763  1.00 25.00           C
ATOM    179  CA  LEU   179      24.871  33.078  23.285  1.00 25.00           C
ATOM    180  CA  ALA   180      27.043  33.814  20.230  1.00 25.00           C
ATOM    181  CA  VAL   181      29.932  31.329  19.797  1.00 25.00           C
ATOM    182  CA  TRP   182      28.131  30.339  16.566  1.00 25.00           C
ATOM    183  CA  GLY   183      24.467  31.372  16.461  1.00 25.00           C
ATOM    184  CA  MET   184      21.867  33.500  18.281  1.00 25.00           C
ATOM    185  CA  ASP   185      22.587  36.249  15.667  1.00 25.00           C
ATOM    186  CA  PRO   186      19.643  38.462  14.650  1.00 25.00           C
ATOM    187  CA  ASN   187      17.559  36.517  17.198  1.00 25.00           C
ATOM    188  CA  ALA   188      15.669  39.220  19.143  1.00 25.00           C
ATOM    189  CA  ASP   189      15.445  36.907  22.188  1.00 25.00           C
ATOM    190  CA  HIS   190      19.204  36.210  21.966  1.00 25.00           C
ATOM    191  CA  GLN   191      19.915  39.969  21.781  1.00 25.00           C
ATOM    192  CA  LYS   192      17.700  40.563  24.849  1.00 25.00           C
ATOM    193  CA  VAL   193      18.769  37.588  26.964  1.00 25.00           C
ATOM    194  CA  ALA   194      21.737  39.513  28.361  1.00 25.00           C
ATOM    195  CA  HIS   195      24.232  40.262  25.631  1.00 25.00           C
ATOM    196  CA  ARG   196      24.721  38.066  22.618  1.00 25.00           C
ATOM    197  CA  PHE   197      28.522  38.165  23.228  1.00 25.00           C
ATOM    198  CA  GLN   198      31.328  40.369  22.035  1.00 25.00           C
ATOM    199  CA  LYS   199      32.163  37.839  19.326  1.00 25.00           C
ATOM    200  CA  PRO   200      29.775  39.782  17.068  1.00 25.00           C
ATOM    201  CA  LEU   201      31.345  39.299  13.609  1.00 25.00           C
ATOM    202  CA  ASP   202      31.271  35.499  14.079  1.00 25.00           C
ATOM    203  CA  ILE   203      27.585  35.673  15.104  1.00 25.00           C
ATOM    204  CA  LEU   204      26.799  37.784  12.007  1.00 25.00           C
ATOM    205  CA  GLU   205      28.617  35.248   9.786  1.00 25.00           C
ATOM    206  CA  LEU   206      26.631  32.389  11.384  1.00 25.00           C
ATOM    207  CA  PHE   207      23.361  34.290  10.777  1.00 25.00           C
TER
END
