
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  147 (  147),  selected  147 , name T0303TS168_5-D1
# Molecule2: number of CA atoms  147 ( 1151),  selected  147 , name T0303_D1.pdb
# PARAMETERS: T0303TS168_5-D1.T0303_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:   146         1 - 223         4.99     5.34
  LCS_AVERAGE:     99.30

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    45       150 - 194         1.98     5.52
  LCS_AVERAGE:     15.70

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    16       151 - 166         1.00     6.94
  LONGEST_CONTINUOUS_SEGMENT:    16       152 - 167         0.84     6.51
  LCS_AVERAGE:      5.41

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  147
LCS_GDT     M       1     M       1      3    6  146     3    4    4    8   16   23   41   49   58   67   86  103  114  124  127  138  139  140  141  142 
LCS_GDT     T       2     T       2      3    6  146     3    3    4    8   13   25   41   49   58   75   87  104  114  124  135  138  139  140  141  142 
LCS_GDT     Q       3     Q       3      3    7  146     3    3    4    5   15   25   41   49   63   86   96  108  120  129  135  138  139  140  141  142 
LCS_GDT     F       4     F       4      3    7  146     1    3    4    6   13   25   41   49   62   77   96  105  116  129  135  138  139  140  141  142 
LCS_GDT     K       5     K       5      3    7  146     3    3    4   14   23   28   41   52   67   82   97  112  125  131  135  138  139  140  141  142 
LCS_GDT     L       6     L       6      4    8  146     3    3    5   10   13   21   30   49   59   77   92  105  114  128  135  138  139  140  141  142 
LCS_GDT     I       7     I       7      4    8  146     3    3    5    6    8   13   27   31   38   51   63   84   93  107  117  124  136  140  141  142 
LCS_GDT     G       8     G       8      4    8  146     3    3    5    6   11   18   27   37   48   77   89  104  114  129  135  138  139  140  141  142 
LCS_GDT     F       9     F       9      4    8  146     3    3    5    6   10   21   30   68   90  103  111  124  129  132  135  138  139  140  141  142 
LCS_GDT     D      10     D      10      4    8  146     3    6   12   17   35   49   84   98  106  113  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L      11     L      11      4    8  146     3    4    6    8   12   27   51   65   95  110  116  127  130  132  135  138  139  140  141  142 
LCS_GDT     D      12     D      12      3    8  146     1    3    9   12   23   49   88   98  106  113  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G      13     G      13      4    8  146     3    6    8   25   35   67   88   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     T      14     T      14      4    6  146     3   10   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L      15     L      15      4    6  146     3    7   19   41   64   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     V      16     V      16      4    6  146     4    7   19   31   64   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     N      17     N      17      4    6  146     2    9   19   30   44   70   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     R      95     R      95      3   15  146     1    7   14   29   42   72   87   97  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L      96     L      96      3   21  146     3   11   27   47   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Y      97     Y      97      4   21  146     3    4    4   12   27   39   61   78   97  107  119  127  130  132  135  138  139  140  141  142 
LCS_GDT     P      98     P      98      4   21  146     3    5   11   20   35   53   69   86  101  113  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     N      99     N      99     11   21  146     3   16   27   47   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     V     100     V     100     11   21  146    11   16   32   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     K     101     K     101     11   21  146    11   16   19   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     E     102     E     102     11   21  146    11   16   24   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     T     103     T     103     11   21  146    11   16   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     104     L     104     11   21  146    11   16   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     E     105     E     105     11   21  146    11   16   26   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     106     A     106     11   21  146    11   16   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     107     L     107     11   21  146    11   16   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     K     108     K     108     11   21  146    11   16   25   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     109     A     109     11   21  146    11   16   28   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Q     110     Q     110      7   21  146     3   12   24   45   64   78   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     111     G     111      7   21  146    11   16   26   47   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Y     112     Y     112      7   21  146     8   16   26   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     I     113     I     113      7   21  146     4   11   22   41   57   74   87   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     114     L     114      7   21  146     4   14   22   36   52   73   86   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     115     A     115      7   21  146     4    6   15   23   36   54   75   96  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     V     116     V     116      7   21  146     4    8   15   23   36   54   74   93  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     V     117     V     117      4    9  146     3    8   11   24   36   52   70   88  102  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     T     118     T     118      4   16  146     3    4    8   28   46   67   84   97  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     N     119     N     119      3   17  146     3    9   21   38   59   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     K     120     K     120      8   17  146     1   16   19   39   65   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     P     121     P     121     11   17  146     3   10   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     T     122     T     122     11   17  146     5   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     K     123     K     123     11   17  146     5   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     H     124     H     124     11   17  146     4   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     V     125     V     125     11   17  146     7   12   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Q     126     Q     126     11   17  146     7   11   22   45   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     P     127     P     127     11   17  146     7   12   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     I     128     I     128     11   17  146     7    9   19   43   64   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     129     L     129     11   17  146     7    9   14   33   54   75   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     T     130     T     130     11   17  146     7    9   17   41   64   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     131     A     131     11   17  146     7    9   19   39   64   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     F     132     F     132      5   17  146     4    7   15   31   60   78   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     133     G     133      5   17  146     4    7   21   46   64   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     I     134     I     134      5   17  146     4   14   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     D     135     D     135      5   17  146     4    9   28   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     H     136     H     136      5    9  146     4    5    5   14   41   60   76   96  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     137     L     137      5    8  146     4    5    5   11   15   30   61   88  100  113  121  127  130  132  135  138  139  140  141  142 
LCS_GDT     F     138     F     138      5    8  146     4    6   17   38   59   76   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     S     139     S     139      4    8  146     5   12   28   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     E     140     E     140      4    6  146     3    4    4   19   25   44   63   82  104  113  122  127  130  132  134  138  139  140  141  142 
LCS_GDT     M     141     M     141      4    6  146     3    4    7   12   24   43   73   96  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     142     L     142      4    9  146     3    4    7   12   42   59   85   96  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     143     G     143      5   10  146     3    5    8   25   34   52   73   96  105  113  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     144     G     144      5   10  146     3    5    9   12   50   71   86   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Q     145     Q     145      5   10  146     3    5   14   42   63   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     S     146     S     146      5   10  146     3   14   19   29   51   75   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     147     L     147      5   21  146     3    9   17   29   56   76   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     P     148     P     148      5   21  146     3   13   21   44   65   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     E     149     E     149      5   37  146     3    9   15   27   41   63   82   95  103  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     I     150     I     150      5   45  146     3    5   13   27   52   76   88   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     K     151     K     151     16   45  146     2    4    8   28   51   76   88   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     P     152     P     152     16   45  146     3   14   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     H     153     H     153     16   45  146     4   14   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     P     154     P     154     16   45  146     8   14   30   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     155     A     155     16   45  146     8   14   30   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     P     156     P     156     16   45  146     8   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     F     157     F     157     16   45  146     8   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Y     158     Y     158     16   45  146     8   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Y     159     Y     159     16   45  146     8   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     160     L     160     16   45  146     8   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     C     161     C     161     16   45  146     7   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     162     G     162     16   45  146     8   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     K     163     K     163     16   45  146     7   14   28   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     F     164     F     164     16   45  146     6   14   28   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     165     G     165     16   45  146     3   14   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     166     L     166     16   45  146     3   10   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Y     167     Y     167     16   45  146     3   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     P     168     P     168      4   45  146     3    8   20   37   59   78   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     K     169     K     169      3   45  146     3    3    8   12   24   37   57   78   97  107  120  127  130  132  135  138  139  140  141  142 
LCS_GDT     Q     170     Q     170      6   45  146     3    3   21   35   50   71   85   96  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     I     171     I     171      6   45  146     3   12   28   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     172     L     172      6   45  146     4   13   28   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     F     173     F     173      6   45  146     4   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     V     174     V     174      6   45  146     3    6   25   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     175     G     175     12   45  146     3   16   28   46   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     D     176     D     176     13   45  146     5   15   28   47   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     S     177     S     177     13   45  146    11   16   28   47   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Q     178     Q     178     13   45  146     6   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     N     179     N     179     13   45  146     6   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     D     180     D     180     13   45  146     7   15   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     I     181     I     181     13   45  146     7   14   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     F     182     F     182     13   45  146     7   14   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     183     A     183     13   45  146     7   14   28   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     184     A     184     13   45  146     7   13   24   47   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     H     185     H     185     13   45  146     7   13   22   47   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     S     186     S     186     13   45  146     7   13   20   43   62   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     187     A     187     13   45  146     3   10   26   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     188     G     188     13   45  146     3   13   30   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     C     189     C     189     11   45  146     3   10   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     190     A     190     11   45  146     3   10   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     V     191     V     191     11   45  146     3   11   31   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     V     192     V     192      9   45  146     3   11   31   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     193     G     193      9   45  146     4   14   31   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     L     194     L     194      6   45  146     5   12   33   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     T     195     T     195      4   24  146     0    4    5    9   33   49   67   86  101  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Y     196     Y     196      4   20  146     2    4   12   22   33   49   67   84  101  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     G     197     G     197      4    7  146     3    7    9   12   15   43   57   81   99  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Y     198     Y     198      3    7  146     3    3    9   19   34   46   60   81   99  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     N     199     N     199      3    7  146     3    7    9   17   34   45   63   84   99  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Y     200     Y     200      3    7  146     3    4    5   12   31   43   57   75   96  110  119  127  130  132  135  138  139  140  141  142 
LCS_GDT     N     201     N     201      3    7  146     3    6   14   16   22   28   40   53   62   80  101  118  123  131  135  138  139  140  141  142 
LCS_GDT     I     202     I     202      3    7  146     3    3    8   16   36   53   71   89  101  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     P     203     P     203      4   11  146     4    6   11   27   46   67   88   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     I     204     I     204      5   11  146     4    8   21   36   56   75   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     205     A     205      5   11  146     4   10   25   44   64   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     Q     206     Q     206      5   11  146     4   10   25   43   64   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     S     207     S     207      5   11  146     3   14   24   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     K     208     K     208      5   11  146     4    7    8   27   42   74   84   98  107  113  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     P     209     P     209      5   11  146     4    9   24   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     D     210     D     210      5   11  146     4   10   25   49   67   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     W     211     W     211      5   11  146     4   14   22   34   54   74   88   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     I     212     I     212      4   11  146     3   10   25   44   64   81   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     F     213     F     213      4   11  146     3    8   19   33   52   73   89   98  107  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     D     214     D     214      4    8  146     3    5    8   13   23   36   48   63   79   95  120  126  129  132  135  138  139  140  141  142 
LCS_GDT     D     215     D     215      4    8  146     3    5    8   21   29   43   56   75   97  112  122  126  130  132  135  138  139  140  141  142 
LCS_GDT     F     216     F     216      5    9  146     3    4    6   18   30   45   62   79  101  114  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     A     217     A     217      7    9  146     3    4    7   11   24   35   60   78   93  113  122  127  130  132  135  138  139  140  141  142 
LCS_GDT     D     218     D     218      7    9  146     3    8    8    9   31   48   64   85  103  113  118  127  130  132  135  138  139  140  141  142 
LCS_GDT     I     219     I     219      7    9  146     5    8    8   12   26   41   61   78   90  105  117  119  127  130  132  136  138  139  141  142 
LCS_GDT     L     220     L     220      7    9  146     5    8    8    9   10   22   25   57   78   93  106  116  119  123  125  131  133  137  139  140 
LCS_GDT     K     221     K     221      7    9  146     5    8    8    9   10   24   36   59   71   84  100  108  115  118  123  127  131  135  138  140 
LCS_GDT     I     222     I     222      7    9  146     5    8    8    9   10   14   21   31   42   56   67   81   91  101  107  113  117  122  130  134 
LCS_GDT     T     223     T     223      7    9  146     5    8    8    9   10   15   18   20   24   30   46   59   68   90   95  104  110  114  121  124 
LCS_GDT     Q     224     Q     224      3    9  142     3    3    3    4    8   11   13   14   14   24   26   31   39   54   58   66   70   98  104  111 
LCS_AVERAGE  LCS_A:  40.14  (   5.41   15.70   99.30 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     11     16     33     49     67     81     89     98    107    114    122    127    130    132    135    138    139    140    141    142 
GDT PERCENT_CA   7.48  10.88  22.45  33.33  45.58  55.10  60.54  66.67  72.79  77.55  82.99  86.39  88.44  89.80  91.84  93.88  94.56  95.24  95.92  96.60
GDT RMS_LOCAL    0.21   0.47   1.26   1.50   1.78   2.04   2.23   2.42   2.66   2.99   3.19   3.35   3.46   3.55   3.88   4.00   4.10   4.22   4.31   4.35
GDT RMS_ALL_CA   6.63   6.52   5.38   5.38   5.41   5.38   5.36   5.38   5.39   5.38   5.39   5.38   5.39   5.39   5.39   5.39   5.41   5.43   5.44   5.42

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1         14.644
LGA    T       2      T       2         13.233
LGA    Q       3      Q       3         11.022
LGA    F       4      F       4         10.692
LGA    K       5      K       5          9.803
LGA    L       6      L       6         10.454
LGA    I       7      I       7         12.164
LGA    G       8      G       8          8.863
LGA    F       9      F       9          6.333
LGA    D      10      D      10          4.345
LGA    L      11      L      11          5.554
LGA    D      12      D      12          4.329
LGA    G      13      G      13          3.873
LGA    T      14      T      14          1.335
LGA    L      15      L      15          2.382
LGA    V      16      V      16          2.728
LGA    N      17      N      17          4.178
LGA    R      95      R      95          4.484
LGA    L      96      L      96          2.445
LGA    Y      97      Y      97          6.816
LGA    P      98      P      98          5.973
LGA    N      99      N      99          2.173
LGA    V     100      V     100          1.357
LGA    K     101      K     101          2.244
LGA    E     102      E     102          2.175
LGA    T     103      T     103          1.314
LGA    L     104      L     104          1.117
LGA    E     105      E     105          1.464
LGA    A     106      A     106          1.001
LGA    L     107      L     107          1.275
LGA    K     108      K     108          1.615
LGA    A     109      A     109          1.465
LGA    Q     110      Q     110          3.411
LGA    G     111      G     111          1.993
LGA    Y     112      Y     112          2.597
LGA    I     113      I     113          3.673
LGA    L     114      L     114          4.111
LGA    A     115      A     115          4.915
LGA    V     116      V     116          4.853
LGA    V     117      V     117          5.597
LGA    T     118      T     118          4.333
LGA    N     119      N     119          3.125
LGA    K     120      K     120          2.477
LGA    P     121      P     121          1.199
LGA    T     122      T     122          1.399
LGA    K     123      K     123          1.650
LGA    H     124      H     124          1.351
LGA    V     125      V     125          0.840
LGA    Q     126      Q     126          2.513
LGA    P     127      P     127          0.985
LGA    I     128      I     128          2.343
LGA    L     129      L     129          3.792
LGA    T     130      T     130          2.976
LGA    A     131      A     131          3.041
LGA    F     132      F     132          3.508
LGA    G     133      G     133          2.877
LGA    I     134      I     134          1.616
LGA    D     135      D     135          1.726
LGA    H     136      H     136          4.750
LGA    L     137      L     137          5.118
LGA    F     138      F     138          3.451
LGA    S     139      S     139          2.772
LGA    E     140      E     140          5.906
LGA    M     141      M     141          5.073
LGA    L     142      L     142          4.775
LGA    G     143      G     143          5.098
LGA    G     144      G     144          3.962
LGA    Q     145      Q     145          2.848
LGA    S     146      S     146          3.879
LGA    L     147      L     147          3.857
LGA    P     148      P     148          3.035
LGA    E     149      E     149          5.026
LGA    I     150      I     150          3.926
LGA    K     151      K     151          3.407
LGA    P     152      P     152          0.759
LGA    H     153      H     153          0.970
LGA    P     154      P     154          1.769
LGA    A     155      A     155          2.015
LGA    P     156      P     156          1.546
LGA    F     157      F     157          1.314
LGA    Y     158      Y     158          1.362
LGA    Y     159      Y     159          1.609
LGA    L     160      L     160          1.894
LGA    C     161      C     161          1.880
LGA    G     162      G     162          1.975
LGA    K     163      K     163          2.878
LGA    F     164      F     164          2.845
LGA    G     165      G     165          1.806
LGA    L     166      L     166          1.270
LGA    Y     167      Y     167          1.671
LGA    P     168      P     168          3.486
LGA    K     169      K     169          6.298
LGA    Q     170      Q     170          4.574
LGA    I     171      I     171          3.008
LGA    L     172      L     172          2.869
LGA    F     173      F     173          1.826
LGA    V     174      V     174          2.473
LGA    G     175      G     175          2.598
LGA    D     176      D     176          2.522
LGA    S     177      S     177          2.376
LGA    Q     178      Q     178          1.649
LGA    N     179      N     179          1.154
LGA    D     180      D     180          1.449
LGA    I     181      I     181          1.770
LGA    F     182      F     182          1.730
LGA    A     183      A     183          2.051
LGA    A     184      A     184          2.525
LGA    H     185      H     185          2.465
LGA    S     186      S     186          2.852
LGA    A     187      A     187          2.237
LGA    G     188      G     188          2.116
LGA    C     189      C     189          1.228
LGA    A     190      A     190          1.482
LGA    V     191      V     191          1.318
LGA    V     192      V     192          1.174
LGA    G     193      G     193          1.830
LGA    L     194      L     194          0.773
LGA    T     195      T     195          6.032
LGA    Y     196      Y     196          6.421
LGA    G     197      G     197          7.225
LGA    Y     198      Y     198          7.154
LGA    N     199      N     199          7.083
LGA    Y     200      Y     200          8.179
LGA    N     201      N     201         10.307
LGA    I     202      I     202          6.731
LGA    P     203      P     203          3.890
LGA    I     204      I     204          3.212
LGA    A     205      A     205          2.572
LGA    Q     206      Q     206          2.720
LGA    S     207      S     207          2.092
LGA    K     208      K     208          3.982
LGA    P     209      P     209          2.181
LGA    D     210      D     210          1.900
LGA    W     211      W     211          3.471
LGA    I     212      I     212          2.506
LGA    F     213      F     213          3.747
LGA    D     214      D     214          8.405
LGA    D     215      D     215          7.471
LGA    F     216      F     216          6.624
LGA    A     217      A     217          6.448
LGA    D     218      D     218          6.021
LGA    I     219      I     219          7.336
LGA    L     220      L     220          9.747
LGA    K     221      K     221         11.533
LGA    I     222      I     222         15.641
LGA    T     223      T     223         17.333
LGA    Q     224      Q     224         22.792

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  147  147    4.0     98    2.42    51.190    46.601     3.891

LGA_LOCAL      RMSD =  2.419  Number of atoms =   98  DIST =   4.00
LGA_ALL_ATOMS  RMSD =  5.385  Number of atoms =  147 
Std_ALL_ATOMS  RMSD =  5.338  (standard rmsd on all 147 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.174026 * X  +   0.983275 * Y  +  -0.053715 * Z  + -12.478536
  Y_new =   0.843996 * X  +   0.120829 * Y  +  -0.522562 * Z  +  79.691162
  Z_new =  -0.507332 * X  +  -0.136274 * Y  +  -0.850908 * Z  +  16.468197 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.982790    0.158803  [ DEG:  -170.9012      9.0988 ]
  Theta =   0.532086    2.609507  [ DEG:    30.4863    149.5137 ]
  Phi   =   1.774139   -1.367454  [ DEG:   101.6507    -78.3493 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0303TS168_5-D1                               
REMARK     2: T0303_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0303TS168_5-D1.T0303_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  147  147   4.0   98   2.42  46.601     5.34
REMARK  ---------------------------------------------------------- 
MOLECULE T0303TS168_5-D1
PFRMAT TS
TARGET T0303
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1     -18.421  48.164  17.192  1.00 25.00           C
ATOM      2  CA  THR     2     -15.886  50.861  16.548  1.00 25.00           C
ATOM      3  CA  GLN     3     -14.277  54.274  16.870  1.00 25.00           C
ATOM      4  CA  PHE     4     -13.164  56.689  19.587  1.00 25.00           C
ATOM      5  CA  LYS     5     -11.623  59.238  21.971  1.00 25.00           C
ATOM      6  CA  LEU     6      -8.987  61.156  23.897  1.00 25.00           C
ATOM      7  CA  ILE     7      -7.909  64.779  24.321  1.00 25.00           C
ATOM      8  CA  GLY     8      -8.374  68.324  23.130  1.00 25.00           C
ATOM      9  CA  PHE     9      -7.586  70.415  20.073  1.00 25.00           C
ATOM     10  CA  ASP    10      -7.518  70.191  16.305  1.00 25.00           C
ATOM     11  CA  LEU    11      -7.097  73.936  15.580  1.00 25.00           C
ATOM     12  CA  ASP    12      -7.304  77.738  16.207  1.00 25.00           C
ATOM     13  CA  GLY    13     -11.011  77.201  15.348  1.00 25.00           C
ATOM     14  CA  THR    14     -14.581  76.648  14.067  1.00 25.00           C
ATOM     15  CA  LEU    15     -16.059  74.668  16.931  1.00 25.00           C
ATOM     16  CA  VAL    16     -15.174  77.180  19.657  1.00 25.00           C
ATOM     17  CA  ASN    17     -17.340  79.972  18.185  1.00 25.00           C
ATOM     95  CA  ARG    95     -21.655  82.158  26.402  1.00 25.00           C
ATOM     96  CA  LEU    96     -19.881  80.647  23.422  1.00 25.00           C
ATOM     97  CA  TYR    97     -22.548  77.916  23.322  1.00 25.00           C
ATOM     98  CA  PRO    98     -25.919  77.799  21.594  1.00 25.00           C
ATOM     99  CA  ASN    99     -24.048  77.401  18.286  1.00 25.00           C
ATOM    100  CA  VAL   100     -21.038  75.158  19.148  1.00 25.00           C
ATOM    101  CA  LYS   101     -21.160  72.706  22.089  1.00 25.00           C
ATOM    102  CA  GLU   102     -24.654  71.559  21.017  1.00 25.00           C
ATOM    103  CA  THR   103     -23.411  71.039  17.432  1.00 25.00           C
ATOM    104  CA  LEU   104     -20.441  68.998  18.731  1.00 25.00           C
ATOM    105  CA  GLU   105     -22.808  66.856  20.848  1.00 25.00           C
ATOM    106  CA  ALA   106     -25.047  66.272  17.797  1.00 25.00           C
ATOM    107  CA  LEU   107     -21.996  65.247  15.722  1.00 25.00           C
ATOM    108  CA  LYS   108     -20.909  62.818  18.477  1.00 25.00           C
ATOM    109  CA  ALA   109     -24.431  61.317  18.577  1.00 25.00           C
ATOM    110  CA  GLN   110     -23.555  57.594  18.901  1.00 25.00           C
ATOM    111  CA  GLY   111     -21.418  58.347  15.834  1.00 25.00           C
ATOM    112  CA  TYR   112     -18.987  60.700  14.012  1.00 25.00           C
ATOM    113  CA  ILE   113     -15.768  62.168  15.408  1.00 25.00           C
ATOM    114  CA  LEU   114     -16.801  65.820  15.756  1.00 25.00           C
ATOM    115  CA  ALA   115     -13.568  67.742  15.422  1.00 25.00           C
ATOM    116  CA  VAL   116     -12.314  71.258  15.894  1.00 25.00           C
ATOM    117  CA  VAL   117     -11.406  72.908  19.183  1.00 25.00           C
ATOM    118  CA  THR   118      -8.957  75.299  20.764  1.00 25.00           C
ATOM    119  CA  ASN   119      -5.157  75.224  20.185  1.00 25.00           C
ATOM    120  CA  LYS   120      -2.244  77.708  19.905  1.00 25.00           C
ATOM    121  CA  PRO   121      -1.905  76.992  23.626  1.00 25.00           C
ATOM    122  CA  THR   122      -2.407  74.782  26.716  1.00 25.00           C
ATOM    123  CA  LYS   123      -4.014  76.565  29.700  1.00 25.00           C
ATOM    124  CA  HIS   124      -6.754  77.966  27.419  1.00 25.00           C
ATOM    125  CA  VAL   125      -7.400  74.466  26.006  1.00 25.00           C
ATOM    126  CA  GLN   126      -7.643  73.050  29.556  1.00 25.00           C
ATOM    127  CA  PRO   127     -10.117  75.811  30.515  1.00 25.00           C
ATOM    128  CA  ILE   128     -12.222  75.037  27.411  1.00 25.00           C
ATOM    129  CA  LEU   129     -12.222  71.314  28.308  1.00 25.00           C
ATOM    130  CA  THR   130     -13.322  72.151  31.880  1.00 25.00           C
ATOM    131  CA  ALA   131     -16.146  74.352  30.520  1.00 25.00           C
ATOM    132  CA  PHE   132     -19.901  74.989  30.402  1.00 25.00           C
ATOM    133  CA  GLY   133     -20.557  71.275  30.578  1.00 25.00           C
ATOM    134  CA  ILE   134     -20.189  70.868  26.764  1.00 25.00           C
ATOM    135  CA  ASP   135     -16.911  68.953  26.674  1.00 25.00           C
ATOM    136  CA  HIS   136     -18.116  66.971  23.628  1.00 25.00           C
ATOM    137  CA  LEU   137     -15.963  69.149  21.328  1.00 25.00           C
ATOM    138  CA  PHE   138     -12.925  68.575  23.590  1.00 25.00           C
ATOM    139  CA  SER   139     -13.555  64.799  23.521  1.00 25.00           C
ATOM    140  CA  GLU   140     -13.793  64.885  19.699  1.00 25.00           C
ATOM    141  CA  MET   141     -10.457  66.673  19.282  1.00 25.00           C
ATOM    142  CA  LEU   142      -6.832  65.392  19.565  1.00 25.00           C
ATOM    143  CA  GLY   143      -3.947  67.484  20.914  1.00 25.00           C
ATOM    144  CA  GLY   144      -2.045  70.752  20.701  1.00 25.00           C
ATOM    145  CA  GLN   145       0.952  70.053  22.913  1.00 25.00           C
ATOM    146  CA  SER   146       3.011  67.546  20.949  1.00 25.00           C
ATOM    147  CA  LEU   147       3.489  70.418  18.535  1.00 25.00           C
ATOM    148  CA  PRO   148       7.195  71.279  18.298  1.00 25.00           C
ATOM    149  CA  GLU   149       6.163  74.492  16.604  1.00 25.00           C
ATOM    150  CA  ILE   150       2.389  75.161  16.984  1.00 25.00           C
ATOM    151  CA  LYS   151       1.832  74.971  13.239  1.00 25.00           C
ATOM    152  CA  PRO   152       0.682  72.763  10.313  1.00 25.00           C
ATOM    153  CA  HIS   153       3.296  69.982  10.784  1.00 25.00           C
ATOM    154  CA  PRO   154       0.254  67.925  11.647  1.00 25.00           C
ATOM    155  CA  ALA   155       1.279  66.350  14.984  1.00 25.00           C
ATOM    156  CA  PRO   156      -2.205  67.047  16.411  1.00 25.00           C
ATOM    157  CA  PHE   157      -3.815  65.446  13.328  1.00 25.00           C
ATOM    158  CA  TYR   158      -1.568  62.370  13.720  1.00 25.00           C
ATOM    159  CA  TYR   159      -2.533  62.105  17.416  1.00 25.00           C
ATOM    160  CA  LEU   160      -6.242  62.338  16.489  1.00 25.00           C
ATOM    161  CA  CYS   161      -5.784  59.588  13.863  1.00 25.00           C
ATOM    162  CA  GLY   162      -4.030  57.375  16.451  1.00 25.00           C
ATOM    163  CA  LYS   163      -6.893  57.959  18.927  1.00 25.00           C
ATOM    164  CA  PHE   164      -9.448  57.035  16.228  1.00 25.00           C
ATOM    165  CA  GLY   165      -8.284  53.539  15.177  1.00 25.00           C
ATOM    166  CA  LEU   166      -8.444  54.765  11.613  1.00 25.00           C
ATOM    167  CA  TYR   167      -7.796  56.345   8.234  1.00 25.00           C
ATOM    168  CA  PRO   168      -9.325  59.452   9.848  1.00 25.00           C
ATOM    169  CA  LYS   169     -12.857  58.421  10.915  1.00 25.00           C
ATOM    170  CA  GLN   170     -14.276  61.649   9.425  1.00 25.00           C
ATOM    171  CA  ILE   171     -11.681  64.452   9.772  1.00 25.00           C
ATOM    172  CA  LEU   172     -14.812  66.492  10.612  1.00 25.00           C
ATOM    173  CA  PHE   173     -12.386  69.416  10.855  1.00 25.00           C
ATOM    174  CA  VAL   174     -11.706  73.174  10.950  1.00 25.00           C
ATOM    175  CA  GLY   175     -11.032  76.807   9.829  1.00 25.00           C
ATOM    176  CA  ASP   176     -10.736  80.335  11.263  1.00 25.00           C
ATOM    177  CA  SER   177      -8.087  81.171   8.635  1.00 25.00           C
ATOM    178  CA  GLN   178      -6.724  78.257   6.605  1.00 25.00           C
ATOM    179  CA  ASN   179      -4.088  76.771   8.952  1.00 25.00           C
ATOM    180  CA  ASP   180      -6.759  74.584  10.608  1.00 25.00           C
ATOM    181  CA  ILE   181      -7.946  73.386   7.170  1.00 25.00           C
ATOM    182  CA  PHE   182      -4.341  72.546   6.191  1.00 25.00           C
ATOM    183  CA  ALA   183      -3.884  70.592   9.453  1.00 25.00           C
ATOM    184  CA  ALA   184      -7.126  68.668   8.782  1.00 25.00           C
ATOM    185  CA  HIS   185      -5.934  67.846   5.237  1.00 25.00           C
ATOM    186  CA  SER   186      -2.585  66.612   6.622  1.00 25.00           C
ATOM    187  CA  ALA   187      -2.575  63.453   8.739  1.00 25.00           C
ATOM    188  CA  GLY   188      -4.917  62.078   6.119  1.00 25.00           C
ATOM    189  CA  CYS   189      -8.467  63.094   5.409  1.00 25.00           C
ATOM    190  CA  ALA   190     -11.957  64.276   4.284  1.00 25.00           C
ATOM    191  CA  VAL   191     -11.748  67.773   5.655  1.00 25.00           C
ATOM    192  CA  VAL   192     -14.093  70.536   6.796  1.00 25.00           C
ATOM    193  CA  GLY   193     -14.740  74.299   6.858  1.00 25.00           C
ATOM    194  CA  LEU   194     -15.585  77.904   7.353  1.00 25.00           C
ATOM    195  CA  THR   195     -18.074  76.610   9.885  1.00 25.00           C
ATOM    196  CA  TYR   196     -19.866  78.342  12.729  1.00 25.00           C
ATOM    197  CA  GLY   197     -19.909  81.270  10.253  1.00 25.00           C
ATOM    198  CA  TYR   198     -16.220  81.796  10.956  1.00 25.00           C
ATOM    199  CA  ASN   199     -14.394  83.022   7.852  1.00 25.00           C
ATOM    200  CA  TYR   200     -11.923  83.216   5.040  1.00 25.00           C
ATOM    201  CA  ASN   201     -13.891  80.486   3.372  1.00 25.00           C
ATOM    202  CA  ILE   202     -11.808  81.485   0.317  1.00 25.00           C
ATOM    203  CA  PRO   203      -8.605  80.398   2.114  1.00 25.00           C
ATOM    204  CA  ILE   204     -10.215  77.038   3.002  1.00 25.00           C
ATOM    205  CA  ALA   205     -11.272  76.552  -0.647  1.00 25.00           C
ATOM    206  CA  GLN   206      -7.711  77.342  -1.811  1.00 25.00           C
ATOM    207  CA  SER   207      -4.562  76.640   0.202  1.00 25.00           C
ATOM    208  CA  LYS   208      -5.616  73.019  -0.275  1.00 25.00           C
ATOM    209  CA  PRO   209      -8.843  72.224   1.596  1.00 25.00           C
ATOM    210  CA  ASP   210     -11.322  69.591   0.612  1.00 25.00           C
ATOM    211  CA  TRP   211     -13.568  72.557  -0.128  1.00 25.00           C
ATOM    212  CA  ILE   212     -16.839  73.353   1.723  1.00 25.00           C
ATOM    213  CA  PHE   213     -18.444  72.843   5.183  1.00 25.00           C
ATOM    214  CA  ASP   214     -21.678  72.009   3.365  1.00 25.00           C
ATOM    215  CA  ASP   215     -23.050  70.902   6.731  1.00 25.00           C
ATOM    216  CA  PHE   216     -25.978  71.564   9.020  1.00 25.00           C
ATOM    217  CA  ALA   217     -28.449  73.262   6.636  1.00 25.00           C
ATOM    218  CA  ASP   218     -28.456  76.397   8.836  1.00 25.00           C
ATOM    219  CA  ILE   219     -24.626  76.430   8.843  1.00 25.00           C
ATOM    220  CA  LEU   220     -24.592  76.104   5.027  1.00 25.00           C
ATOM    221  CA  LYS   221     -27.076  79.003   4.732  1.00 25.00           C
ATOM    222  CA  ILE   222     -24.890  81.143   7.037  1.00 25.00           C
ATOM    223  CA  THR   223     -21.808  80.320   4.918  1.00 25.00           C
ATOM    224  CA  GLN   224     -20.170  83.776   4.469  1.00 25.00           C
TER
END
