 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0082.inter 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0082.1bol.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1495 atoms, MODEL 839 atoms, 839 common with TARGET 
           Number of atoms possible to evaluate: 676 
 
 
 CA-RMS TARGET<->PARENT(1bol)	 2.220320 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    82.46           46.6   326    86.2   378     ARMSMC  
     WELL ORDERED  . . . . .    81.81           47.4   321    86.5   371     ARMSMC  
     NO INTER CONTACTS . . .    83.23           45.6   237    85.9   276     ARMSMC  
     SHIFTED CHAIN . . . . .    84.22           44.1   254    84.1   302     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    74.17           55.6   187    91.7   204     ARMSMC  
     LARGE SHIFTS/INSERTIONS    89.36           39.4    94    78.3   120     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    85.06           44.1   170    81.7   208     ARMSMC  
     BURIED  . . . . . . . .    79.54           49.4   156    91.8   170     ARMSMC  
     CORE  . . . . . . . . .    79.50           49.6   232    89.9   258     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   162     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   148     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   119     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   154     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    93     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    89     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    88     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   115     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    86     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    87     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    80     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    88     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    67     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    30     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    85     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    36     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    22     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    29     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    24     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    10     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    19     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    12     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     6     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.40754     r(1,2) =  -0.59680     r(1,3) =  -0.69119 
 r(2,1) =  -0.90837     r(2,2) =  -0.18729     r(2,3) =  -0.37388 
 r(3,1) =   0.09368     r(3,2) =   0.78023     r(3,3) =  -0.61844 
THE OFFSET VECTOR: 
 v(1) =  49.89267     v(2) = 110.18663     v(3) =  32.20090 
 
 Number of iteration 24                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.83           (Number of atoms:    9) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   20.29        169    88.9   190     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1201                            CRMSCA  
     WELL ORDERED  . . . . .   20.42        166    88.8   187     CRMSCA  
     NO INTER CONTACTS . . .   20.11        124    89.2   139     CRMSCA  
     SHIFTED CHAIN . . . . .   20.63        132    86.8   152     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .   18.86         95    93.1   102     CRMSCA  
     SHIFTED SS UNITS  . . .   17.35         49    90.7    54     CRMSCA  
     LARGE SHIFTS/INSERTIONS   18.45         49    81.7    60     CRMSCA  
     SURFACE . . . . . . . .   20.98         87    83.7   104     CRMSCA  
     BURIED  . . . . . . . .   19.53         82    95.3    86     CRMSCA  
     CORE  . . . . . . . . .   20.99        120    92.3   130     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   20.24        676    72.3   935     CRMSMC  
     WELL ORDERED  . . . . .   20.32        665    72.5   917     CRMSMC  
     NO INTER CONTACTS . . .   20.09        496    72.6   683     CRMSMC  
     SHIFTED CHAIN . . . . .   20.60        528    70.8   746     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .   18.81        380    75.1   506     CRMSMC  
     SHIFTED SS UNITS  . . .   17.51        196    73.4   267     CRMSMC  
     LARGE SHIFTS/INSERTIONS   18.41        196    66.9   293     CRMSMC  
     SURFACE . . . . . . . .   20.75        348    68.0   512     CRMSMC  
     BURIED  . . . . . . . .   19.68        328    77.5   423     CRMSMC  
     CORE  . . . . . . . . .   20.95        480    74.8   642     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   735     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   651     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   549     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   625     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   368     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   426     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   196     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   368     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   367     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   539     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   20.24        676    45.2  1495     CRMSALL 
     WELL ORDERED  . . . . .   20.32        665    47.6  1398     CRMSALL 
     NO INTER CONTACTS . . .   20.09        496    44.9  1105     CRMSALL 
     SHIFTED CHAIN . . . . .   20.60        528    45.3  1165     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .   18.81        380    45.6   834     CRMSALL 
     LARGE SHIFTS/INSERTIONS   18.41        196    45.0   436     CRMSALL 
     SURFACE . . . . . . . .   20.75        348    44.4   784     CRMSALL 
     BURIED  . . . . . . . .   19.68        328    46.1   711     CRMSALL 
     CORE  . . . . . . . . .   20.95        480    45.3  1059     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1    11.01     14    77.8    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2     9.55     18   100.0    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3    33.08      5   100.0     5      93-ESTFN-97   
 CA  LOOP  4     0.00      0     0.0     3     127-GRT-129  
 CA  LOOP  5    15.31      3    42.9     7     153-TDPQTKV-159  
 CA  LOOP  6    33.75      3   100.0     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1    11.07     56    64.4    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2     9.39     72    80.9    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3    32.97     20    80.0    25      93-ESTFN-97   
 MC  LOOP  4     0.00      0     0.0    14     127-GRT-129  
 MC  LOOP  5    15.66     12    34.3    35     153-TDPQTKV-159  
 MC  LOOP  6    33.46     12    85.7    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1    11.07     56    45.9   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2     9.39     72    54.1   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3    32.97     20    48.8    41      93-ESTFN-97   
 ALL LOOP  4     0.00      0     0.0    22     127-GRT-129  
 ALL LOOP  5    15.66     12    22.2    54     153-TDPQTKV-159  
 ALL LOOP  6    33.46     12    57.1    21     171-QDG-173  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     6.52     14    77.8    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2     4.60     18   100.0    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3     3.08      5   100.0     5      93-ESTFN-97   
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 CA  LOOP  5     0.31      3    42.9     7     153-TDPQTKV-159  
 CA  LOOP  6     0.53      3   100.0     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     6.35     56    64.4    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2     4.40     72    80.9    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3     3.01     20    80.0    25      93-ESTFN-97   
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 MC  LOOP  5     2.24     12    34.3    35     153-TDPQTKV-159  
 MC  LOOP  6     1.58     12    85.7    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     6.35     56    45.9   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2     4.40     72    54.1   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3     3.01     20    48.8    41      93-ESTFN-97   
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 ALL LOOP  5     2.24     12    22.2    54     153-TDPQTKV-159  
 ALL LOOP  6     1.58     12    57.1    21     171-QDG-173  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.783      1.000       0.500    169    88.9   190     ERRCA  
     WELL ORDERED  . . . . .   17.919      1.000       0.500    166    88.8   187     ERRCA  
     NO INTER CONTACTS . . .   17.550      1.000       0.500    124    89.2   139     ERRCA  
     SHIFTED CHAIN . . . . .   18.085      1.000       0.500    132    86.8   152     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .   16.468      1.000       0.500     95    93.1   102     ERRCA  
     LARGE SHIFTS/INSERTIONS   15.332      1.000       0.500     49    81.7    60     ERRCA  
     SURFACE . . . . . . . .   18.293      1.000       0.500     87    83.7   104     ERRCA  
     BURIED  . . . . . . . .   17.242      1.000       0.500     82    95.3    86     ERRCA  
     CORE  . . . . . . . . .   18.784      1.000       0.500    120    92.3   130     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.767      1.000       0.500    676    72.3   935     ERRMC  
     WELL ORDERED  . . . . .   17.851      1.000       0.500    665    72.5   917     ERRMC  
     NO INTER CONTACTS . . .   17.540      1.000       0.500    496    72.6   683     ERRMC  
     SHIFTED CHAIN . . . . .   18.087      1.000       0.500    528    70.8   746     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .   16.476      1.000       0.500    380    75.1   506     ERRMC  
     LARGE SHIFTS/INSERTIONS   15.294      1.000       0.500    196    66.9   293     ERRMC  
     SURFACE . . . . . . . .   18.124      1.000       0.500    348    68.0   512     ERRMC  
     BURIED  . . . . . . . .   17.389      1.000       0.500    328    77.5   423     ERRMC  
     CORE  . . . . . . . . .   18.777      1.000       0.500    480    74.8   642     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   735     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   651     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   549     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   625     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   557     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   426     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   196     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   367     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   539     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.767      1.000       0.500    676    45.2  1495     ERRALL 
     WELL ORDERED  . . . . .   17.851      1.000       0.500    665    47.6  1398     ERRALL 
     NO INTER CONTACTS . . .   17.540      1.000       0.500    496    44.9  1105     ERRALL 
     SHIFTED CHAIN . . . . .   18.087      1.000       0.500    528    45.3  1165     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .   16.476      1.000       0.500    380    45.6   834     ERRALL 
     LARGE SHIFTS/INSERTIONS   15.294      1.000       0.500    196    45.0   436     ERRALL 
     SURFACE . . . . . . . .   18.124      1.000       0.500    348    44.4   784     ERRALL 
     BURIED  . . . . . . . .   17.389      1.000       0.500    328    46.1   711     ERRALL 
     CORE  . . . . . . . . .   18.777      1.000       0.500    480    45.3  1059     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         1         5        10        15        43     169     190   DISTCA 
CA  (P)      0.53      2.63      5.26      7.89     22.63             190   DISTCA 
CA  (RMS)    0.99      1.49      1.91      2.84      6.40                   DISTCA 
 
ALL (N)         4        17        35        66       174     676    1495   DISTALL 
ALL (P)      0.27      1.14      2.34      4.41     11.64            1495   DISTALL 
ALL (RMS)    0.92      1.43      1.99      3.14      6.46                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         130           120            49          RMSLSI 
CA  (P)       68.42         63.16         25.79          RMSLSI 
CA  (RMS)      1.44         20.99         18.45          RMSLSI 
 
 
 
END of the results output 
