 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0082.inter 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0082.1bol.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1495 atoms, MODEL 1407 atoms, 1407 common with TARGET 
           Number of atoms possible to evaluate: 88 
 
 
 CA-RMS TARGET<->PARENT(1bol)	 2.220320 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    60.72           73.8    42    11.1   378     ARMSMC  
     WELL ORDERED  . . . . .    60.72           73.8    42    11.3   371     ARMSMC  
     NO INTER CONTACTS . . .    73.92           64.3    28    10.1   276     ARMSMC  
     SHIFTED CHAIN . . . . .    62.88           67.7    31    10.3   302     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    24.45           82.1    28    13.7   204     ARMSMC  
     LARGE SHIFTS/INSERTIONS    84.09           57.1    21    17.5   120     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    63.48           77.8    27    13.0   208     ARMSMC  
     BURIED  . . . . . . . .    55.42           66.7    15     8.8   170     ARMSMC  
     CORE  . . . . . . . . .    17.44           90.5    21     8.1   258     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   162     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   148     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   119     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   154     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    93     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    89     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    88     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   115     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    86     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    87     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    80     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    88     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    67     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    30     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    85     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    36     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    22     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    29     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    24     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    10     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    19     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    12     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     6     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.65426     r(1,2) =  -0.51012     r(1,3) =   0.55831 
 r(2,1) =  -0.68748     r(2,2) =  -0.70880     r(2,3) =   0.15801 
 r(3,1) =   0.31513     r(3,2) =  -0.48721     r(3,3) =  -0.81444 
THE OFFSET VECTOR: 
 v(1) =  12.49070     v(2) =  83.07179     v(3) =  31.51002 
 
 Number of iteration 25                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.23           (Number of atoms:   15) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    4.44         22    11.6   190     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2020                            CRMSCA  
     WELL ORDERED  . . . . .    4.44         22    11.8   187     CRMSCA  
     NO INTER CONTACTS . . .    5.25         15    10.8   139     CRMSCA  
     SHIFTED CHAIN . . . . .    4.06         16    10.5   152     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .    1.62         14    13.7   102     CRMSCA  
     SHIFTED SS UNITS  . . .    1.62         14    25.9    54     CRMSCA  
     LARGE SHIFTS/INSERTIONS    6.10         11    18.3    60     CRMSCA  
     SURFACE . . . . . . . .    5.45         14    13.5   104     CRMSCA  
     BURIED  . . . . . . . .    1.55          8     9.3    86     CRMSCA  
     CORE  . . . . . . . . .    1.51         11     8.5   130     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    4.29         88     9.4   935     CRMSMC  
     WELL ORDERED  . . . . .    4.29         88     9.6   917     CRMSMC  
     NO INTER CONTACTS . . .    5.07         60     8.8   683     CRMSMC  
     SHIFTED CHAIN . . . . .    4.00         64     8.6   746     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .    1.56         56    11.1   506     CRMSMC  
     SHIFTED SS UNITS  . . .    1.56         56    21.0   267     CRMSMC  
     LARGE SHIFTS/INSERTIONS    5.90         44    15.0   293     CRMSMC  
     SURFACE . . . . . . . .    5.22         56    10.9   512     CRMSMC  
     BURIED  . . . . . . . .    1.75         32     7.6   423     CRMSMC  
     CORE  . . . . . . . . .    1.42         44     6.9   642     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   735     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   651     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   549     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   625     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   368     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   426     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   196     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   368     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   367     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   539     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    4.29         88     5.9  1495     CRMSALL 
     WELL ORDERED  . . . . .    4.29         88     6.3  1398     CRMSALL 
     NO INTER CONTACTS . . .    5.07         60     5.4  1105     CRMSALL 
     SHIFTED CHAIN . . . . .    4.00         64     5.5  1165     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .    1.56         56     6.7   834     CRMSALL 
     LARGE SHIFTS/INSERTIONS    5.90         44    10.1   436     CRMSALL 
     SURFACE . . . . . . . .    5.22         56     7.1   784     CRMSALL 
     BURIED  . . . . . . . .    1.75         32     4.5   711     CRMSALL 
     CORE  . . . . . . . . .    1.42         44     4.2  1059     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     0.00      0     0.0    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2     6.10     11    61.1    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3     0.00      0     0.0     5      93-ESTFN-97   
 CA  LOOP  4     0.00      0     0.0     3     127-GRT-129  
 CA  LOOP  5     0.00      0     0.0     7     153-TDPQTKV-159  
 CA  LOOP  6     0.00      0     0.0     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     0.00      0     0.0    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2     5.90     44    49.4    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3     0.00      0     0.0    25      93-ESTFN-97   
 MC  LOOP  4     0.00      0     0.0    14     127-GRT-129  
 MC  LOOP  5     0.00      0     0.0    35     153-TDPQTKV-159  
 MC  LOOP  6     0.00      0     0.0    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     0.00      0     0.0   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2     5.90     44    33.1   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3     0.00      0     0.0    41      93-ESTFN-97   
 ALL LOOP  4     0.00      0     0.0    22     127-GRT-129  
 ALL LOOP  5     0.00      0     0.0    54     153-TDPQTKV-159  
 ALL LOOP  6     0.00      0     0.0    21     171-QDG-173  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 CA  LOOP  2     3.76     11    61.1    18      43-TSLTNCPGSPFDITKISH-60   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 MC  LOOP  2     3.78     44    49.4    89      43-TSLTNCPGSPFDITKISH-60   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 ALL LOOP  2     3.78     44    33.1   133      43-TSLTNCPGSPFDITKISH-60   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.842      1.000       0.500     22    11.6   190     ERRCA  
     WELL ORDERED  . . . . .    2.842      1.000       0.500     22    11.8   187     ERRCA  
     NO INTER CONTACTS . . .    3.478      1.000       0.500     15    10.8   139     ERRCA  
     SHIFTED CHAIN . . . . .    2.761      1.000       0.500     16    10.5   152     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .    1.438      1.000       0.500     14    13.7   102     ERRCA  
     LARGE SHIFTS/INSERTIONS    4.412      1.000       0.500     11    18.3    60     ERRCA  
     SURFACE . . . . . . . .    3.717      1.000       0.500     14    13.5   104     ERRCA  
     BURIED  . . . . . . . .    1.310      1.000       0.500      8     9.3    86     ERRCA  
     CORE  . . . . . . . . .    1.271      1.000       0.500     11     8.5   130     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.737      1.000       0.500     88     9.4   935     ERRMC  
     WELL ORDERED  . . . . .    2.737      1.000       0.500     88     9.6   917     ERRMC  
     NO INTER CONTACTS . . .    3.336      1.000       0.500     60     8.8   683     ERRMC  
     SHIFTED CHAIN . . . . .    2.681      1.000       0.500     64     8.6   746     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .    1.371      1.000       0.500     56    11.1   506     ERRMC  
     LARGE SHIFTS/INSERTIONS    4.283      1.000       0.500     44    15.0   293     ERRMC  
     SURFACE . . . . . . . .    3.544      1.000       0.500     56    10.9   512     ERRMC  
     BURIED  . . . . . . . .    1.324      1.000       0.500     32     7.6   423     ERRMC  
     CORE  . . . . . . . . .    1.191      1.000       0.500     44     6.9   642     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   735     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   651     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   549     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   625     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   557     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   426     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   196     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   367     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   539     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.737      1.000       0.500     88     5.9  1495     ERRALL 
     WELL ORDERED  . . . . .    2.737      1.000       0.500     88     6.3  1398     ERRALL 
     NO INTER CONTACTS . . .    3.336      1.000       0.500     60     5.4  1105     ERRALL 
     SHIFTED CHAIN . . . . .    2.681      1.000       0.500     64     5.5  1165     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .    1.371      1.000       0.500     56     6.7   834     ERRALL 
     LARGE SHIFTS/INSERTIONS    4.283      1.000       0.500     44    10.1   436     ERRALL 
     SURFACE . . . . . . . .    3.544      1.000       0.500     56     7.1   784     ERRALL 
     BURIED  . . . . . . . .    1.324      1.000       0.500     32     4.5   711     ERRALL 
     CORE  . . . . . . . . .    1.191      1.000       0.500     44     4.2  1059     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         9        14        18        19        20      22     190   DISTCA 
CA  (P)      4.74      7.37      9.47     10.00     10.53             190   DISTCA 
CA  (RMS)    0.73      1.14      1.62      1.90      2.65                   DISTCA 
 
ALL (N)        36        57        69        76        80      88    1495   DISTALL 
ALL (P)      2.41      3.81      4.62      5.08      5.35            1495   DISTALL 
ALL (RMS)    0.73      1.10      1.48      1.86      2.52                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         130            11            11          RMSLSI 
CA  (P)       68.42          5.79          5.79          RMSLSI 
CA  (RMS)      1.44          1.51          6.10          RMSLSI 
 
 
 
END of the results output 
