 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0082.inter 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0082.1bol.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1495 atoms, MODEL 1421 atoms, 1421 common with TARGET 
           Number of atoms possible to evaluate: 64 
 
 
 CA-RMS TARGET<->PARENT(1bol)	 2.220320 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    77.82           56.7    30     7.9   378     ARMSMC  
     WELL ORDERED  . . . . .    77.82           56.7    30     8.1   371     ARMSMC  
     NO INTER CONTACTS . . .    70.59           59.3    27     9.8   276     ARMSMC  
     SHIFTED CHAIN . . . . .   104.72           21.4    14     4.6   302     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    83.83           56.0    25    12.3   204     ARMSMC  
     LARGE SHIFTS/INSERTIONS   125.80           14.3     7     5.8   120     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    26.05           66.7     3     1.4   208     ARMSMC  
     BURIED  . . . . . . . .    81.57           55.6    27    15.9   170     ARMSMC  
     CORE  . . . . . . . . .    55.52           69.6    23     8.9   258     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   162     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   148     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   119     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   154     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    93     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    89     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    88     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   115     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    86     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    87     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    80     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    88     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    67     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    30     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    85     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    36     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    22     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    29     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    24     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    10     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    19     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    12     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     6     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =  -0.41614     r(1,2) =  -0.70670     r(1,3) =   0.57219 
 r(2,1) =  -0.58589     r(2,2) =  -0.27284     r(2,3) =  -0.76308 
 r(3,1) =   0.69538     r(3,2) =  -0.65279     r(3,3) =  -0.30050 
THE OFFSET VECTOR: 
 v(1) =  54.98655     v(2) =  62.08115     v(3) =  22.53995 
 
 Number of iteration 23                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.48           (Number of atoms:   11) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    3.67         16     8.4   190     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2293                            CRMSCA  
     WELL ORDERED  . . . . .    3.67         16     8.6   187     CRMSCA  
     NO INTER CONTACTS . . .    2.42         14    10.1   139     CRMSCA  
     SHIFTED CHAIN . . . . .    4.82          8     5.3   152     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .    3.83         13    12.7   102     CRMSCA  
     SHIFTED SS UNITS  . . .    0.00          0     0.0    54     CRMSCA  
     LARGE SHIFTS/INSERTIONS    6.32          4     6.7    60     CRMSCA  
     SURFACE . . . . . . . .    7.60          2     1.9   104     CRMSCA  
     BURIED  . . . . . . . .    2.67         14    16.3    86     CRMSCA  
     CORE  . . . . . . . . .    2.16         12     9.2   130     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    3.72         64     6.8   935     CRMSMC  
     WELL ORDERED  . . . . .    3.72         64     7.0   917     CRMSMC  
     NO INTER CONTACTS . . .    2.33         56     8.2   683     CRMSMC  
     SHIFTED CHAIN . . . . .    4.97         32     4.3   746     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .    3.88         52    10.3   506     CRMSMC  
     SHIFTED SS UNITS  . . .    0.00          0     0.0   267     CRMSMC  
     LARGE SHIFTS/INSERTIONS    6.53         16     5.5   293     CRMSMC  
     SURFACE . . . . . . . .    7.83          8     1.6   512     CRMSMC  
     BURIED  . . . . . . . .    2.65         56    13.2   423     CRMSMC  
     CORE  . . . . . . . . .    2.04         48     7.5   642     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   735     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   651     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   549     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   625     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   368     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   426     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   196     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   368     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   367     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   539     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    3.72         64     4.3  1495     CRMSALL 
     WELL ORDERED  . . . . .    3.72         64     4.6  1398     CRMSALL 
     NO INTER CONTACTS . . .    2.33         56     5.1  1105     CRMSALL 
     SHIFTED CHAIN . . . . .    4.97         32     2.7  1165     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .    3.88         52     6.2   834     CRMSALL 
     LARGE SHIFTS/INSERTIONS    6.53         16     3.7   436     CRMSALL 
     SURFACE . . . . . . . .    7.83          8     1.0   784     CRMSALL 
     BURIED  . . . . . . . .    2.65         56     7.9   711     CRMSALL 
     CORE  . . . . . . . . .    2.04         48     4.5  1059     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     6.32      4    22.2    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2     0.00      0     0.0    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3     0.00      0     0.0     5      93-ESTFN-97   
 CA  LOOP  4     0.00      0     0.0     3     127-GRT-129  
 CA  LOOP  5     0.00      0     0.0     7     153-TDPQTKV-159  
 CA  LOOP  6     0.00      0     0.0     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     6.53     16    18.4    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2     0.00      0     0.0    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3     0.00      0     0.0    25      93-ESTFN-97   
 MC  LOOP  4     0.00      0     0.0    14     127-GRT-129  
 MC  LOOP  5     0.00      0     0.0    35     153-TDPQTKV-159  
 MC  LOOP  6     0.00      0     0.0    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     6.53     16    13.1   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2     0.00      0     0.0   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3     0.00      0     0.0    41      93-ESTFN-97   
 ALL LOOP  4     0.00      0     0.0    22     127-GRT-129  
 ALL LOOP  5     0.00      0     0.0    54     153-TDPQTKV-159  
 ALL LOOP  6     0.00      0     0.0    21     171-QDG-173  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     1.58      4    22.2    18      13-AVCSFQKSGSCPGSGLRT-30   
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     2.25     16    18.4    87      13-AVCSFQKSGSCPGSGLRT-30   
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     2.25     16    13.1   122      13-AVCSFQKSGSCPGSGLRT-30   
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.728      1.000       0.500     16     8.4   190     ERRCA  
     WELL ORDERED  . . . . .    2.728      1.000       0.500     16     8.6   187     ERRCA  
     NO INTER CONTACTS . . .    2.046      1.000       0.500     14    10.1   139     ERRCA  
     SHIFTED CHAIN . . . . .    3.727      1.000       0.500      8     5.3   152     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .    2.830      1.000       0.500     13    12.7   102     ERRCA  
     LARGE SHIFTS/INSERTIONS    5.486      1.000       0.500      4     6.7    60     ERRCA  
     SURFACE . . . . . . . .    5.802      1.000       0.500      2     1.9   104     ERRCA  
     BURIED  . . . . . . . .    2.289      1.000       0.500     14    16.3    86     ERRCA  
     CORE  . . . . . . . . .    1.809      1.000       0.500     12     9.2   130     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.729      1.000       0.500     64     6.8   935     ERRMC  
     WELL ORDERED  . . . . .    2.729      1.000       0.500     64     7.0   917     ERRMC  
     NO INTER CONTACTS . . .    1.996      1.000       0.500     56     8.2   683     ERRMC  
     SHIFTED CHAIN . . . . .    3.939      1.000       0.500     32     4.3   746     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .    2.775      1.000       0.500     52    10.3   506     ERRMC  
     LARGE SHIFTS/INSERTIONS    5.677      1.000       0.500     16     5.5   293     ERRMC  
     SURFACE . . . . . . . .    6.245      1.000       0.500      8     1.6   512     ERRMC  
     BURIED  . . . . . . . .    2.227      1.000       0.500     56    13.2   423     ERRMC  
     CORE  . . . . . . . . .    1.747      1.000       0.500     48     7.5   642     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   735     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   651     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   549     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   625     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   557     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   426     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   196     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   367     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   539     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.729      1.000       0.500     64     4.3  1495     ERRALL 
     WELL ORDERED  . . . . .    2.729      1.000       0.500     64     4.6  1398     ERRALL 
     NO INTER CONTACTS . . .    1.996      1.000       0.500     56     5.1  1105     ERRALL 
     SHIFTED CHAIN . . . . .    3.939      1.000       0.500     32     2.7  1165     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .    2.775      1.000       0.500     52     6.2   834     ERRALL 
     LARGE SHIFTS/INSERTIONS    5.677      1.000       0.500     16     3.7   436     ERRALL 
     SURFACE . . . . . . . .    6.245      1.000       0.500      8     1.0   784     ERRALL 
     BURIED  . . . . . . . .    2.227      1.000       0.500     56     7.9   711     ERRALL 
     CORE  . . . . . . . . .    1.747      1.000       0.500     48     4.5  1059     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         2         9        11        15        15      16     190   DISTCA 
CA  (P)      1.05      4.74      5.79      7.89      7.89             190   DISTCA 
CA  (RMS)    0.92      1.24      1.48      2.59      2.59                   DISTCA 
 
ALL (N)         9        34        45        57        61      64    1495   DISTALL 
ALL (P)      0.60      2.27      3.01      3.81      4.08            1495   DISTALL 
ALL (RMS)    0.71      1.25      1.64      2.31      2.81                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         130            12             4          RMSLSI 
CA  (P)       68.42          6.32          2.11          RMSLSI 
CA  (RMS)      1.44          2.16          6.32          RMSLSI 
 
 
 
END of the results output 
