 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0082.inter 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0082.1bol.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1495 atoms, MODEL 888 atoms, 888 common with TARGET 
           Number of atoms possible to evaluate: 628 
 
 
 CA-RMS TARGET<->PARENT(1bol)	 2.220320 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    55.88           70.5   298    78.8   378     ARMSMC  
     WELL ORDERED  . . . . .    53.84           71.8   291    78.4   371     ARMSMC  
     NO INTER CONTACTS . . .    54.58           71.3   237    85.9   276     ARMSMC  
     SHIFTED CHAIN . . . . .    60.02           65.9   229    75.8   302     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    30.34           90.7   162    79.4   204     ARMSMC  
     LARGE SHIFTS/INSERTIONS    92.32           30.6    72    60.0   120     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    66.61           57.8   161    77.4   208     ARMSMC  
     BURIED  . . . . . . . .    39.71           85.4   137    80.6   170     ARMSMC  
     CORE  . . . . . . . . .    37.44           83.2   226    87.6   258     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   162     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   148     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   119     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   154     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    93     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    89     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    88     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   115     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    86     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    87     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    80     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    88     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    67     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    30     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    85     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    36     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    22     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    29     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    24     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    10     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    19     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    12     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     6     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.69376     r(1,2) =  -0.21950     r(1,3) =   0.68594 
 r(2,1) =  -0.60241     r(2,2) =  -0.69885     r(2,3) =   0.38564 
 r(3,1) =   0.39472     r(3,2) =  -0.68075     r(3,3) =  -0.61706 
THE OFFSET VECTOR: 
 v(1) =   3.82234     v(2) =  77.92622     v(3) =  32.43183 
 
 Number of iteration 62                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.33           (Number of atoms:  103) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    6.48        157    82.6   190     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0413                            CRMSCA  
     WELL ORDERED  . . . . .    6.51        154    82.4   187     CRMSCA  
     NO INTER CONTACTS . . .    6.24        125    89.9   139     CRMSCA  
     SHIFTED CHAIN . . . . .    6.29        121    79.6   152     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .    6.25         84    82.4   102     CRMSCA  
     SHIFTED SS UNITS  . . .    3.56         43    79.6    54     CRMSCA  
     LARGE SHIFTS/INSERTIONS    9.64         39    65.0    60     CRMSCA  
     SURFACE . . . . . . . .    7.03         84    80.8   104     CRMSCA  
     BURIED  . . . . . . . .    5.79         73    84.9    86     CRMSCA  
     CORE  . . . . . . . . .    5.02        118    90.8   130     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    6.43        628    67.2   935     CRMSMC  
     WELL ORDERED  . . . . .    6.46        615    67.1   917     CRMSMC  
     NO INTER CONTACTS . . .    6.25        500    73.2   683     CRMSMC  
     SHIFTED CHAIN . . . . .    6.25        484    64.9   746     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .    6.25        336    66.4   506     CRMSMC  
     SHIFTED SS UNITS  . . .    3.59        172    64.4   267     CRMSMC  
     LARGE SHIFTS/INSERTIONS    9.50        156    53.2   293     CRMSMC  
     SURFACE . . . . . . . .    6.93        336    65.6   512     CRMSMC  
     BURIED  . . . . . . . .    5.80        292    69.0   423     CRMSMC  
     CORE  . . . . . . . . .    5.02        472    73.5   642     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   735     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   651     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   549     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   625     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   368     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   426     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   196     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   368     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   367     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   539     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    6.43        628    42.0  1495     CRMSALL 
     WELL ORDERED  . . . . .    6.46        615    44.0  1398     CRMSALL 
     NO INTER CONTACTS . . .    6.25        500    45.2  1105     CRMSALL 
     SHIFTED CHAIN . . . . .    6.25        484    41.5  1165     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .    6.25        336    40.3   834     CRMSALL 
     LARGE SHIFTS/INSERTIONS    9.50        156    35.8   436     CRMSALL 
     SURFACE . . . . . . . .    6.93        336    42.9   784     CRMSALL 
     BURIED  . . . . . . . .    5.80        292    41.1   711     CRMSALL 
     CORE  . . . . . . . . .    5.02        472    44.6  1059     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1    12.25      7    38.9    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2     8.20     15    83.3    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3     0.00      0     0.0     5      93-ESTFN-97   
 CA  LOOP  4     3.33      2    66.7     3     127-GRT-129  
 CA  LOOP  5    13.96      7   100.0     7     153-TDPQTKV-159  
 CA  LOOP  6     6.79      3   100.0     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1    11.88     28    32.2    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2     8.10     60    67.4    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3     0.00      0     0.0    25      93-ESTFN-97   
 MC  LOOP  4     2.86      8    57.1    14     127-GRT-129  
 MC  LOOP  5    14.08     28    80.0    35     153-TDPQTKV-159  
 MC  LOOP  6     6.10     12    85.7    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1    11.88     28    23.0   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2     8.10     60    45.1   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3     0.00      0     0.0    41      93-ESTFN-97   
 ALL LOOP  4     2.86      8    36.4    22     127-GRT-129  
 ALL LOOP  5    14.08     28    51.9    54     153-TDPQTKV-159  
 ALL LOOP  6     6.10     12    57.1    21     171-QDG-173  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     3.23      7    38.9    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2     5.04     15    83.3    18      43-TSLTNCPGSPFDITKISH-60   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 CA  LOOP  5     4.25      7   100.0     7     153-TDPQTKV-159  
 CA  LOOP  6     0.65      3   100.0     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     3.34     28    32.2    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2     4.88     60    67.4    89      43-TSLTNCPGSPFDITKISH-60   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 MC  LOOP  5     4.34     28    80.0    35     153-TDPQTKV-159  
 MC  LOOP  6     1.49     12    85.7    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     3.34     28    23.0   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2     4.88     60    45.1   133      43-TSLTNCPGSPFDITKISH-60   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 ALL LOOP  5     4.34     28    51.9    54     153-TDPQTKV-159  
 ALL LOOP  6     1.49     12    57.1    21     171-QDG-173  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.996      1.000       0.500    157    82.6   190     ERRCA  
     WELL ORDERED  . . . . .    3.973      1.000       0.500    154    82.4   187     ERRCA  
     NO INTER CONTACTS . . .    3.736      1.000       0.500    125    89.9   139     ERRCA  
     SHIFTED CHAIN . . . . .    4.135      1.000       0.500    121    79.6   152     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .    3.283      1.000       0.500     84    82.4   102     ERRCA  
     LARGE SHIFTS/INSERTIONS    8.422      1.000       0.500     39    65.0    60     ERRCA  
     SURFACE . . . . . . . .    4.914      1.000       0.500     84    80.8   104     ERRCA  
     BURIED  . . . . . . . .    2.940      1.000       0.500     73    84.9    86     ERRCA  
     CORE  . . . . . . . . .    2.533      1.000       0.500    118    90.8   130     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.964      1.000       0.500    628    67.2   935     ERRMC  
     WELL ORDERED  . . . . .    3.942      1.000       0.500    615    67.1   917     ERRMC  
     NO INTER CONTACTS . . .    3.746      1.000       0.500    500    73.2   683     ERRMC  
     SHIFTED CHAIN . . . . .    4.115      1.000       0.500    484    64.9   746     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .    3.287      1.000       0.500    336    66.4   506     ERRMC  
     LARGE SHIFTS/INSERTIONS    8.232      1.000       0.500    156    53.2   293     ERRMC  
     SURFACE . . . . . . . .    4.824      1.000       0.500    336    65.6   512     ERRMC  
     BURIED  . . . . . . . .    2.974      1.000       0.500    292    69.0   423     ERRMC  
     CORE  . . . . . . . . .    2.553      1.000       0.500    472    73.5   642     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   735     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   651     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   549     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   625     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   557     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   426     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   196     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   367     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   539     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.964      1.000       0.500    628    42.0  1495     ERRALL 
     WELL ORDERED  . . . . .    3.942      1.000       0.500    615    44.0  1398     ERRALL 
     NO INTER CONTACTS . . .    3.746      1.000       0.500    500    45.2  1105     ERRALL 
     SHIFTED CHAIN . . . . .    4.115      1.000       0.500    484    41.5  1165     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .    3.287      1.000       0.500    336    40.3   834     ERRALL 
     LARGE SHIFTS/INSERTIONS    8.232      1.000       0.500    156    35.8   436     ERRALL 
     SURFACE . . . . . . . .    4.824      1.000       0.500    336    42.9   784     ERRALL 
     BURIED  . . . . . . . .    2.974      1.000       0.500    292    41.1   711     ERRALL 
     CORE  . . . . . . . . .    2.553      1.000       0.500    472    44.6  1059     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        36        94       110       120       133     157     190   DISTCA 
CA  (P)     18.95     49.47     57.89     63.16     70.00             190   DISTCA 
CA  (RMS)    0.69      1.21      1.46      1.80      2.73                   DISTCA 
 
ALL (N)       147       366       437       485       537     628    1495   DISTALL 
ALL (P)      9.83     24.48     29.23     32.44     35.92            1495   DISTALL 
ALL (RMS)    0.69      1.19      1.46      1.84      2.82                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         130           118            39          RMSLSI 
CA  (P)       68.42         62.11         20.53          RMSLSI 
CA  (RMS)      1.44          5.02          9.64          RMSLSI 
 
 
 
END of the results output 
