 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0082.inter 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0082.1bol.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1495 atoms, MODEL 784 atoms, 784 common with TARGET 
           Number of atoms possible to evaluate: 724 
 
 
 CA-RMS TARGET<->PARENT(1bol)	 2.220320 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    62.50           64.9   348    92.1   378     ARMSMC  
     WELL ORDERED  . . . . .    59.87           66.0   341    91.9   371     ARMSMC  
     NO INTER CONTACTS . . .    62.15           63.3   256    92.8   276     ARMSMC  
     SHIFTED CHAIN . . . . .    65.69           61.6   276    91.4   302     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    43.58           80.7   192    94.1   204     ARMSMC  
     LARGE SHIFTS/INSERTIONS    90.78           29.2   106    88.3   120     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    69.33           56.9   195    93.8   208     ARMSMC  
     BURIED  . . . . . . . .    52.53           75.2   153    90.0   170     ARMSMC  
     CORE  . . . . . . . . .    44.81           80.6   242    93.8   258     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   162     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   148     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   119     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   154     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    93     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    89     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    88     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   115     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    86     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    87     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    80     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    88     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    67     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    30     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    85     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    36     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    22     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    29     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    24     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    10     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    19     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    12     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     6     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.70454     r(1,2) =  -0.23431     r(1,3) =   0.66987 
 r(2,1) =  -0.59763     r(2,2) =  -0.70492     r(2,3) =   0.38199 
 r(3,1) =   0.38270     r(3,2) =  -0.66946     r(3,3) =  -0.63668 
THE OFFSET VECTOR: 
 v(1) =   3.77385     v(2) =  77.90503     v(3) =  32.31291 
 
 Number of iteration 60                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.45           (Number of atoms:  106) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    9.08        181    95.3   190     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0502                            CRMSCA  
     WELL ORDERED  . . . . .    9.09        178    95.2   187     CRMSCA  
     NO INTER CONTACTS . . .    9.65        134    96.4   139     CRMSCA  
     SHIFTED CHAIN . . . . .    7.85        144    94.7   152     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .    9.91         98    96.1   102     CRMSCA  
     SHIFTED SS UNITS  . . .    2.16         53    98.1    54     CRMSCA  
     LARGE SHIFTS/INSERTIONS   10.28         56    93.3    60     CRMSCA  
     SURFACE . . . . . . . .    7.17        100    96.2   104     CRMSCA  
     BURIED  . . . . . . . .   10.99         81    94.2    86     CRMSCA  
     CORE  . . . . . . . . .    8.49        125    96.2   130     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    9.03        724    77.4   935     CRMSMC  
     WELL ORDERED  . . . . .    9.06        711    77.5   917     CRMSMC  
     NO INTER CONTACTS . . .    9.62        536    78.5   683     CRMSMC  
     SHIFTED CHAIN . . . . .    7.78        576    77.2   746     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .    9.89        392    77.5   506     CRMSMC  
     SHIFTED SS UNITS  . . .    2.12        212    79.4   267     CRMSMC  
     LARGE SHIFTS/INSERTIONS   10.20        224    76.5   293     CRMSMC  
     SURFACE . . . . . . . .    7.11        400    78.1   512     CRMSMC  
     BURIED  . . . . . . . .   10.95        324    76.6   423     CRMSMC  
     CORE  . . . . . . . . .    8.46        500    77.9   642     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   735     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   651     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   549     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   625     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   368     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   426     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   196     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   368     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   367     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   539     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    9.03        724    48.4  1495     CRMSALL 
     WELL ORDERED  . . . . .    9.06        711    50.9  1398     CRMSALL 
     NO INTER CONTACTS . . .    9.62        536    48.5  1105     CRMSALL 
     SHIFTED CHAIN . . . . .    7.78        576    49.4  1165     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .    9.89        392    47.0   834     CRMSALL 
     LARGE SHIFTS/INSERTIONS   10.20        224    51.4   436     CRMSALL 
     SURFACE . . . . . . . .    7.11        400    51.0   784     CRMSALL 
     BURIED  . . . . . . . .   10.95        324    45.6   711     CRMSALL 
     CORE  . . . . . . . . .    8.46        500    47.2  1059     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1    14.60     15    83.3    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2     7.82     18   100.0    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3     2.68      5   100.0     5      93-ESTFN-97   
 CA  LOOP  4     3.20      2    66.7     3     127-GRT-129  
 CA  LOOP  5    14.06      7   100.0     7     153-TDPQTKV-159  
 CA  LOOP  6     6.55      3   100.0     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1    14.48     60    69.0    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2     7.72     72    80.9    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3     2.71     20    80.0    25      93-ESTFN-97   
 MC  LOOP  4     3.14      8    57.1    14     127-GRT-129  
 MC  LOOP  5    14.18     28    80.0    35     153-TDPQTKV-159  
 MC  LOOP  6     5.88     12    85.7    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1    14.48     60    49.2   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2     7.72     72    54.1   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3     2.71     20    48.8    41      93-ESTFN-97   
 ALL LOOP  4     3.14      8    36.4    22     127-GRT-129  
 ALL LOOP  5    14.18     28    51.9    54     153-TDPQTKV-159  
 ALL LOOP  6     5.88     12    57.1    21     171-QDG-173  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     7.61     15    83.3    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2     3.87     18   100.0    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3     1.66      5   100.0     5      93-ESTFN-97   
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 CA  LOOP  5     4.25      7   100.0     7     153-TDPQTKV-159  
 CA  LOOP  6     0.65      3   100.0     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     7.50     60    69.0    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2     3.76     72    80.9    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3     1.86     20    80.0    25      93-ESTFN-97   
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 MC  LOOP  5     4.34     28    80.0    35     153-TDPQTKV-159  
 MC  LOOP  6     1.49     12    85.7    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     7.50     60    49.2   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2     3.76     72    54.1   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3     1.86     20    48.8    41      93-ESTFN-97   
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 ALL LOOP  5     4.34     28    51.9    54     153-TDPQTKV-159  
 ALL LOOP  6     1.49     12    57.1    21     171-QDG-173  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.700      1.000       0.500    181    95.3   190     ERRCA  
     WELL ORDERED  . . . . .    5.665      1.000       0.500    178    95.2   187     ERRCA  
     NO INTER CONTACTS . . .    6.078      1.000       0.500    134    96.4   139     ERRCA  
     SHIFTED CHAIN . . . . .    5.111      1.000       0.500    144    94.7   152     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .    5.717      1.000       0.500     98    96.1   102     ERRCA  
     LARGE SHIFTS/INSERTIONS    8.381      1.000       0.500     56    93.3    60     ERRCA  
     SURFACE . . . . . . . .    4.989      1.000       0.500    100    96.2   104     ERRCA  
     BURIED  . . . . . . . .    6.578      1.000       0.500     81    94.2    86     ERRCA  
     CORE  . . . . . . . . .    4.500      1.000       0.500    125    96.2   130     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.660      1.000       0.500    724    77.4   935     ERRMC  
     WELL ORDERED  . . . . .    5.643      1.000       0.500    711    77.5   917     ERRMC  
     NO INTER CONTACTS . . .    6.067      1.000       0.500    536    78.5   683     ERRMC  
     SHIFTED CHAIN . . . . .    5.061      1.000       0.500    576    77.2   746     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .    5.693      1.000       0.500    392    77.5   506     ERRMC  
     LARGE SHIFTS/INSERTIONS    8.261      1.000       0.500    224    76.5   293     ERRMC  
     SURFACE . . . . . . . .    4.927      1.000       0.500    400    78.1   512     ERRMC  
     BURIED  . . . . . . . .    6.566      1.000       0.500    324    76.6   423     ERRMC  
     CORE  . . . . . . . . .    4.495      1.000       0.500    500    77.9   642     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   735     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   651     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   549     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   625     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   557     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   426     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   196     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   367     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   539     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.660      1.000       0.500    724    48.4  1495     ERRALL 
     WELL ORDERED  . . . . .    5.643      1.000       0.500    711    50.9  1398     ERRALL 
     NO INTER CONTACTS . . .    6.067      1.000       0.500    536    48.5  1105     ERRALL 
     SHIFTED CHAIN . . . . .    5.061      1.000       0.500    576    49.4  1165     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .    5.693      1.000       0.500    392    47.0   834     ERRALL 
     LARGE SHIFTS/INSERTIONS    8.261      1.000       0.500    224    51.4   436     ERRALL 
     SURFACE . . . . . . . .    4.927      1.000       0.500    400    51.0   784     ERRALL 
     BURIED  . . . . . . . .    6.566      1.000       0.500    324    45.6   711     ERRALL 
     CORE  . . . . . . . . .    4.495      1.000       0.500    500    47.2  1059     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        32        94       112       125       142     181     190   DISTCA 
CA  (P)     16.84     49.47     58.95     65.79     74.74             190   DISTCA 
CA  (RMS)    0.79      1.32      1.55      1.90      3.08                   DISTCA 
 
ALL (N)       124       367       450       506       577     724    1495   DISTALL 
ALL (P)      8.29     24.55     30.10     33.85     38.60            1495   DISTALL 
ALL (RMS)    0.76      1.29      1.55      1.96      3.27                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         130           125            56          RMSLSI 
CA  (P)       68.42         65.79         29.47          RMSLSI 
CA  (RMS)      1.44          8.49         10.28          RMSLSI 
 
 
 
END of the results output 
