 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0082.inter 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0082.1bol.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1495 atoms, MODEL 1163 atoms, 1163 common with TARGET 
           Number of atoms possible to evaluate: 300 
 
 
 CA-RMS TARGET<->PARENT(1bol)	 2.220320 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    65.19           59.8   122    32.3   378     ARMSMC  
     WELL ORDERED  . . . . .    65.19           59.8   122    32.9   371     ARMSMC  
     NO INTER CONTACTS . . .    68.43           57.7    97    35.1   276     ARMSMC  
     SHIFTED CHAIN . . . . .    66.32           61.1    90    29.8   302     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    55.66           68.3   101    49.5   204     ARMSMC  
     LARGE SHIFTS/INSERTIONS    74.07           52.4    21    17.5   120     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    71.88           52.7    55    26.4   208     ARMSMC  
     BURIED  . . . . . . . .    59.13           65.7    67    39.4   170     ARMSMC  
     CORE  . . . . . . . . .    63.18           61.4   101    39.1   258     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   162     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   148     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   119     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   154     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    93     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    89     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    88     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   115     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    86     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    87     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    80     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    88     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    67     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    30     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    85     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    36     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    22     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    29     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    24     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    10     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    19     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    12     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     6     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.66872     r(1,2) =   0.63401     r(1,3) =  -0.38839 
 r(2,1) =   0.04605     r(2,2) =   0.48605     r(2,3) =   0.87272 
 r(3,1) =   0.74209     r(3,2) =  -0.60148     r(3,3) =   0.29584 
THE OFFSET VECTOR: 
 v(1) =  11.11258     v(2) =  41.72765     v(3) =  42.16360 
 
 Number of iteration 24                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.52           (Number of atoms:    8) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   20.82         75    39.5   190     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2776                            CRMSCA  
     WELL ORDERED  . . . . .   20.82         75    40.1   187     CRMSCA  
     NO INTER CONTACTS . . .   19.14         59    42.4   139     CRMSCA  
     SHIFTED CHAIN . . . . .   21.16         55    36.2   152     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .   18.30         61    59.8   102     CRMSCA  
     SHIFTED SS UNITS  . . .   11.61         35    64.8    54     CRMSCA  
     LARGE SHIFTS/INSERTIONS   26.67         14    23.3    60     CRMSCA  
     SURFACE . . . . . . . .   19.86         33    31.7   104     CRMSCA  
     BURIED  . . . . . . . .   21.54         42    48.8    86     CRMSCA  
     CORE  . . . . . . . . .   19.23         61    46.9   130     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   20.71        300    32.1   935     CRMSMC  
     WELL ORDERED  . . . . .   20.71        300    32.7   917     CRMSMC  
     NO INTER CONTACTS . . .   18.98        236    34.6   683     CRMSMC  
     SHIFTED CHAIN . . . . .   21.08        220    29.5   746     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .   18.11        244    48.2   506     CRMSMC  
     SHIFTED SS UNITS  . . .   11.64        140    52.4   267     CRMSMC  
     LARGE SHIFTS/INSERTIONS   26.58         56    19.1   293     CRMSMC  
     SURFACE . . . . . . . .   19.64        132    25.8   512     CRMSMC  
     BURIED  . . . . . . . .   21.52        168    39.7   423     CRMSMC  
     CORE  . . . . . . . . .   19.11        244    38.0   642     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   735     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   651     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   549     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   625     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   368     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   426     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   196     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   368     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   367     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   539     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   20.71        300    20.1  1495     CRMSALL 
     WELL ORDERED  . . . . .   20.71        300    21.5  1398     CRMSALL 
     NO INTER CONTACTS . . .   18.98        236    21.4  1105     CRMSALL 
     SHIFTED CHAIN . . . . .   21.08        220    18.9  1165     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .   18.11        244    29.3   834     CRMSALL 
     LARGE SHIFTS/INSERTIONS   26.58         56    12.8   436     CRMSALL 
     SURFACE . . . . . . . .   19.64        132    16.8   784     CRMSALL 
     BURIED  . . . . . . . .   21.52        168    23.6   711     CRMSALL 
     CORE  . . . . . . . . .   19.11        244    23.0  1059     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1    18.35      2    11.1    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2    18.26      4    22.2    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3    49.21      3    60.0     5      93-ESTFN-97   
 CA  LOOP  4    12.36      3   100.0     3     127-GRT-129  
 CA  LOOP  5    10.63      2    28.6     7     153-TDPQTKV-159  
 CA  LOOP  6     0.00      0     0.0     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1    17.85      8     9.2    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2    17.28     16    18.0    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3    49.68     12    48.0    25      93-ESTFN-97   
 MC  LOOP  4    12.07     12    85.7    14     127-GRT-129  
 MC  LOOP  5    10.42      8    22.9    35     153-TDPQTKV-159  
 MC  LOOP  6     0.00      0     0.0    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1    17.85      8     6.6   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2    17.28     16    12.0   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3    49.68     12    29.3    41      93-ESTFN-97   
 ALL LOOP  4    12.07     12    54.5    22     127-GRT-129  
 ALL LOOP  5    10.42      8    14.8    54     153-TDPQTKV-159  
 ALL LOOP  6     0.00      0     0.0    21     171-QDG-173  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 CA  LOOP  2     1.47      4    22.2    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3     3.66      3    60.0     5      93-ESTFN-97   
 CA  LOOP  4     0.19      3   100.0     3     127-GRT-129  
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 MC  LOOP  2     1.42     16    18.0    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3     4.03     12    48.0    25      93-ESTFN-97   
 MC  LOOP  4     1.17     12    85.7    14     127-GRT-129  
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 ALL LOOP  2     1.42     16    12.0   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3     4.03     12    29.3    41      93-ESTFN-97   
 ALL LOOP  4     1.17     12    54.5    22     127-GRT-129  
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.551      1.000       0.500     75    39.5   190     ERRCA  
     WELL ORDERED  . . . . .   16.551      1.000       0.500     75    40.1   187     ERRCA  
     NO INTER CONTACTS . . .   15.884      1.000       0.500     59    42.4   139     ERRCA  
     SHIFTED CHAIN . . . . .   15.929      1.000       0.500     55    36.2   152     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .   14.594      1.000       0.500     61    59.8   102     ERRCA  
     LARGE SHIFTS/INSERTIONS   22.325      1.000       0.500     14    23.3    60     ERRCA  
     SURFACE . . . . . . . .   15.205      1.000       0.500     33    31.7   104     ERRCA  
     BURIED  . . . . . . . .   17.608      1.000       0.500     42    48.8    86     ERRCA  
     CORE  . . . . . . . . .   15.225      1.000       0.500     61    46.9   130     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.425      1.000       0.500    300    32.1   935     ERRMC  
     WELL ORDERED  . . . . .   16.425      1.000       0.500    300    32.7   917     ERRMC  
     NO INTER CONTACTS . . .   15.774      1.000       0.500    236    34.6   683     ERRMC  
     SHIFTED CHAIN . . . . .   15.793      1.000       0.500    220    29.5   746     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .   14.489      1.000       0.500    244    48.2   506     ERRMC  
     LARGE SHIFTS/INSERTIONS   21.925      1.000       0.500     56    19.1   293     ERRMC  
     SURFACE . . . . . . . .   14.897      1.000       0.500    132    25.8   512     ERRMC  
     BURIED  . . . . . . . .   17.626      1.000       0.500    168    39.7   423     ERRMC  
     CORE  . . . . . . . . .   15.163      1.000       0.500    244    38.0   642     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   735     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   651     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   549     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   625     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   557     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   426     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   196     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   367     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   539     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.425      1.000       0.500    300    20.1  1495     ERRALL 
     WELL ORDERED  . . . . .   16.425      1.000       0.500    300    21.5  1398     ERRALL 
     NO INTER CONTACTS . . .   15.774      1.000       0.500    236    21.4  1105     ERRALL 
     SHIFTED CHAIN . . . . .   15.793      1.000       0.500    220    18.9  1165     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .   14.489      1.000       0.500    244    29.3   834     ERRALL 
     LARGE SHIFTS/INSERTIONS   21.925      1.000       0.500     56    12.8   436     ERRALL 
     SURFACE . . . . . . . .   14.897      1.000       0.500    132    16.8   784     ERRALL 
     BURIED  . . . . . . . .   17.626      1.000       0.500    168    23.6   711     ERRALL 
     CORE  . . . . . . . . .   15.163      1.000       0.500    244    23.0  1059     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         1         7         8        10        26      75     190   DISTCA 
CA  (P)      0.53      3.68      4.21      5.26     13.68             190   DISTCA 
CA  (RMS)    0.62      1.42      1.52      1.97      6.61                   DISTCA 
 
ALL (N)         7        21        33        44       101     300    1495   DISTALL 
ALL (P)      0.47      1.40      2.21      2.94      6.76            1495   DISTALL 
ALL (RMS)    0.67      1.30      1.78      2.53      6.34                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         130            61            14          RMSLSI 
CA  (P)       68.42         32.11          7.37          RMSLSI 
CA  (RMS)      1.44         19.23         26.67          RMSLSI 
 
 
 
END of the results output 
