 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0082.inter 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0082.1bol.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1495 atoms, MODEL 985 atoms, 985 common with TARGET 
           Number of atoms possible to evaluate: 488 
 
 
 CA-RMS TARGET<->PARENT(1bol)	 2.220320 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    38.07           81.9   216    57.1   378     ARMSMC  
     WELL ORDERED  . . . . .    37.93           82.2   213    57.4   371     ARMSMC  
     NO INTER CONTACTS . . .    37.85           81.7   169    61.2   276     ARMSMC  
     SHIFTED CHAIN . . . . .    39.91           79.1   148    49.0   302     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    15.73           92.4   157    77.0   204     ARMSMC  
     LARGE SHIFTS/INSERTIONS    78.36           34.4    32    26.7   120     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    43.48           75.8    95    45.7   208     ARMSMC  
     BURIED  . . . . . . . .    33.21           86.8   121    71.2   170     ARMSMC  
     CORE  . . . . . . . . .    25.17           90.2   184    71.3   258     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   162     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   148     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   119     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   154     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    93     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   127     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    89     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    88     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   115     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    86     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    87     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    80     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    88     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    67     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    30     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    56     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    85     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    36     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    22     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    29     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    24     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    10     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    19     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    18     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    12     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     6     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.71017     r(1,2) =  -0.25029     r(1,3) =   0.65804 
 r(2,1) =  -0.58585     r(2,2) =  -0.72843     r(2,3) =   0.35520 
 r(3,1) =   0.39043     r(3,2) =  -0.63777     r(3,3) =  -0.66394 
THE OFFSET VECTOR: 
 v(1) =   4.04164     v(2) =  78.17399     v(3) =  31.51617 
 
 Number of iteration 35                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.35           (Number of atoms:   91) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    4.54        122    64.2   190     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0372                            CRMSCA  
     WELL ORDERED  . . . . .    4.57        120    64.2   187     CRMSCA  
     NO INTER CONTACTS . . .    4.16         95    68.3   139     CRMSCA  
     SHIFTED CHAIN . . . . .    4.85         87    57.2   152     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .    3.66         85    83.3   102     CRMSCA  
     SHIFTED SS UNITS  . . .    4.83         47    87.0    54     CRMSCA  
     LARGE SHIFTS/INSERTIONS    6.65         20    33.3    60     CRMSCA  
     SURFACE . . . . . . . .    5.37         56    53.8   104     CRMSCA  
     BURIED  . . . . . . . .    3.70         66    76.7    86     CRMSCA  
     CORE  . . . . . . . . .    4.00        102    78.5   130     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    4.48        488    52.2   935     CRMSMC  
     WELL ORDERED  . . . . .    4.47        481    52.5   917     CRMSMC  
     NO INTER CONTACTS . . .    4.07        380    55.6   683     CRMSMC  
     SHIFTED CHAIN . . . . .    4.78        348    46.6   746     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .    3.65        340    67.2   506     CRMSMC  
     SHIFTED SS UNITS  . . .    4.81        188    70.4   267     CRMSMC  
     LARGE SHIFTS/INSERTIONS    6.45         80    27.3   293     CRMSMC  
     SURFACE . . . . . . . .    5.33        224    43.8   512     CRMSMC  
     BURIED  . . . . . . . .    3.61        264    62.4   423     CRMSMC  
     CORE  . . . . . . . . .    3.99        408    63.6   642     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   735     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   651     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   549     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   625     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   368     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   426     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   196     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   368     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   367     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   539     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    4.48        488    32.6  1495     CRMSALL 
     WELL ORDERED  . . . . .    4.47        481    34.4  1398     CRMSALL 
     NO INTER CONTACTS . . .    4.07        380    34.4  1105     CRMSALL 
     SHIFTED CHAIN . . . . .    4.78        348    29.9  1165     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .    3.65        340    40.8   834     CRMSALL 
     LARGE SHIFTS/INSERTIONS    6.45         80    18.3   436     CRMSALL 
     SURFACE . . . . . . . .    5.33        224    28.6   784     CRMSALL 
     BURIED  . . . . . . . .    3.61        264    37.1   711     CRMSALL 
     CORE  . . . . . . . . .    3.99        408    38.5  1059     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     0.00      0     0.0    18      13-AVCSFQKSGSCPGSGLRT-30   
 CA  LOOP  2     5.88     10    55.6    18      43-TSLTNCPGSPFDITKISH-60   
 CA  LOOP  3     7.23      2    40.0     5      93-ESTFN-97   
 CA  LOOP  4     3.75      3   100.0     3     127-GRT-129  
 CA  LOOP  5     0.00      0     0.0     7     153-TDPQTKV-159  
 CA  LOOP  6     3.64      2    66.7     3     171-QDG-173  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     0.00      0     0.0    87      13-AVCSFQKSGSCPGSGLRT-30   
 MC  LOOP  2     5.81     40    44.9    89      43-TSLTNCPGSPFDITKISH-60   
 MC  LOOP  3     6.94      8    32.0    25      93-ESTFN-97   
 MC  LOOP  4     3.36     12    85.7    14     127-GRT-129  
 MC  LOOP  5     0.00      0     0.0    35     153-TDPQTKV-159  
 MC  LOOP  6     3.85      8    57.1    14     171-QDG-173  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     0.00      0     0.0   122      13-AVCSFQKSGSCPGSGLRT-30   
 ALL LOOP  2     5.81     40    30.1   133      43-TSLTNCPGSPFDITKISH-60   
 ALL LOOP  3     6.94      8    19.5    41      93-ESTFN-97   
 ALL LOOP  4     3.36     12    54.5    22     127-GRT-129  
 ALL LOOP  5     0.00      0     0.0    54     153-TDPQTKV-159  
 ALL LOOP  6     3.85      8    38.1    21     171-QDG-173  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 CA  LOOP  2     3.05     10    55.6    18      43-TSLTNCPGSPFDITKISH-60   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 CA  LOOP  4     0.43      3   100.0     3     127-GRT-129  
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 MC  LOOP  2     3.19     40    44.9    89      43-TSLTNCPGSPFDITKISH-60   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 MC  LOOP  4     1.45     12    85.7    14     127-GRT-129  
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 ALL LOOP  2     3.19     40    30.1   133      43-TSLTNCPGSPFDITKISH-60   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 ALL LOOP  4     1.45     12    54.5    22     127-GRT-129  
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.926      1.000       0.500    122    64.2   190     ERRCA  
     WELL ORDERED  . . . . .    2.942      1.000       0.500    120    64.2   187     ERRCA  
     NO INTER CONTACTS . . .    2.494      1.000       0.500     95    68.3   139     ERRCA  
     SHIFTED CHAIN . . . . .    3.370      1.000       0.500     87    57.2   152     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .    2.223      1.000       0.500     85    83.3   102     ERRCA  
     LARGE SHIFTS/INSERTIONS    5.418      1.000       0.500     20    33.3    60     ERRCA  
     SURFACE . . . . . . . .    3.828      1.000       0.500     56    53.8   104     ERRCA  
     BURIED  . . . . . . . .    2.161      1.000       0.500     66    76.7    86     ERRCA  
     CORE  . . . . . . . . .    2.437      1.000       0.500    102    78.5   130     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.904      1.000       0.500    488    52.2   935     ERRMC  
     WELL ORDERED  . . . . .    2.895      1.000       0.500    481    52.5   917     ERRMC  
     NO INTER CONTACTS . . .    2.460      1.000       0.500    380    55.6   683     ERRMC  
     SHIFTED CHAIN . . . . .    3.326      1.000       0.500    348    46.6   746     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .    2.208      1.000       0.500    340    67.2   506     ERRMC  
     LARGE SHIFTS/INSERTIONS    5.309      1.000       0.500     80    27.3   293     ERRMC  
     SURFACE . . . . . . . .    3.820      1.000       0.500    224    43.8   512     ERRMC  
     BURIED  . . . . . . . .    2.126      1.000       0.500    264    62.4   423     ERRMC  
     CORE  . . . . . . . . .    2.432      1.000       0.500    408    63.6   642     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   735     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   651     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   549     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   625     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   557     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   426     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   196     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   368     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   367     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   539     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.904      1.000       0.500    488    32.6  1495     ERRALL 
     WELL ORDERED  . . . . .    2.895      1.000       0.500    481    34.4  1398     ERRALL 
     NO INTER CONTACTS . . .    2.460      1.000       0.500    380    34.4  1105     ERRALL 
     SHIFTED CHAIN . . . . .    3.326      1.000       0.500    348    29.9  1165     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .    2.208      1.000       0.500    340    40.8   834     ERRALL 
     LARGE SHIFTS/INSERTIONS    5.309      1.000       0.500     80    18.3   436     ERRALL 
     SURFACE . . . . . . . .    3.820      1.000       0.500    224    28.6   784     ERRALL 
     BURIED  . . . . . . . .    2.126      1.000       0.500    264    37.1   711     ERRALL 
     CORE  . . . . . . . . .    2.432      1.000       0.500    408    38.5  1059     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        36        77        94        98       114     122     190   DISTCA 
CA  (P)     18.95     40.53     49.47     51.58     60.00             190   DISTCA 
CA  (RMS)    0.63      1.11      1.42      1.61      3.34                   DISTCA 
 
ALL (N)       146       312       371       391       457     488    1495   DISTALL 
ALL (P)      9.77     20.87     24.82     26.15     30.57            1495   DISTALL 
ALL (RMS)    0.62      1.13      1.39      1.62      3.33                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         130           102            20          RMSLSI 
CA  (P)       68.42         53.68         10.53          RMSLSI 
CA  (RMS)      1.44          4.00          6.65          RMSLSI 
 
 
 
END of the results output 
