 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0062.inter 
CONANA-PAIR            ../CONANA/T0062.pair 
# 
NUMBER-OF-PARENTS      6 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0062.2cnd.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0062.1ndh.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0062.1fdr.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0062.1amo_A.rot 
ALIGNMENT-DALI(5)      ../PARENTS/casp3.T0062.1fnc.rot 
ALIGNMENT-DALI(6)      ../PARENTS/casp3.T0062.2pia.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1793 atoms, MODEL 1837 atoms, 1793 common with TARGET 
           Number of atoms possible to evaluate: 643 
 
 
 CA-RMS TARGET<->PARENT(2cnd)	 2.429767 
 
 CA-RMS TARGET<->PARENT(1ndh)	 2.615694 
 
 CA-RMS TARGET<->PARENT(1fdr)	 3.203933 
 
 CA-RMS TARGET<->PARENT(1amo_A)	 2.678109 
 
 CA-RMS TARGET<->PARENT(1fnc)	 2.402750 
 
 CA-RMS TARGET<->PARENT(2pia)	 2.791516 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    60.51           63.5   148    33.1   447     ARMSMC  
     WELL ORDERED  . . . . .    47.23           73.7    99    26.3   377     ARMSMC  
     NO INTER CONTACTS . . .    60.51           63.5   148    37.9   391     ARMSMC  
     SHIFTED CHAIN . . . . .    58.18           65.4   127    33.4   380     ARMSMC  
     ALTERNATIVE PARENT  . .    55.38           70.0    60    33.3   180     ARMSMC  
     SECONDARY STRUCTURE . .    50.91           69.5    82    33.6   244     ARMSMC  
     LARGE SHIFTS/INSERTIONS    69.89           53.8    39    28.9   135     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    71.12           51.9    81    35.5   228     ARMSMC  
     BURIED  . . . . . . . .    44.41           77.6    67    30.6   219     ARMSMC  
     CORE  . . . . . . . . .    56.77           67.0   109    34.9   312     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    81.65           46.2    65    39.9   163     ARMSSC1 
     WELL ORDERED  . . . . .    77.78           50.0    36    34.0   106     ARMSSC1 
     NO INTER CONTACTS . . .    81.65           46.2    65    46.1   141     ARMSSC1 
     RELIABLE SIDE CHAINS  .    84.10           42.1    57    38.0   150     ARMSSC1 
     CHANGED ANGLES  . . . .    84.83           41.0    39    35.8   109     ARMSSC1 
     SHIFTED CHAIN . . . . .    81.88           46.4    56    40.9   137     ARMSSC1 
     ALTERNATIVE PARENT  . .    89.49           37.5    24    36.4    66     ARMSSC1 
     SECONDARY STRUCTURE . .    77.32           52.5    40    42.1    95     ARMSSC1 
     LARGE SHIFTS/INSERTIONS    88.11           43.8    16    31.4    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .    80.12           45.7    35    39.3    89     ARMSSC1 
     BURIED  . . . . . . . .    83.40           46.7    30    40.5    74     ARMSSC1 
     CORE  . . . . . . . . .    79.42           46.9    49    43.8   112     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    66.60           51.1    45    39.5   114     ARMSSC2 
     WELL ORDERED  . . . . .    64.98           60.9    23    33.3    69     ARMSSC2 
     NO INTER CONTACTS . . .    66.60           51.1    45    45.0   100     ARMSSC2 
     RELIABLE SIDE CHAINS  .    63.46           53.7    41    44.6    92     ARMSSC2 
     CHANGED ANGLES  . . . .    61.80           52.9    34    37.4    91     ARMSSC2 
     SHIFTED CHAIN . . . . .    60.86           55.0    40    41.2    97     ARMSSC2 
     ALTERNATIVE PARENT  . .    65.99           37.5    16    35.6    45     ARMSSC2 
     SECONDARY STRUCTURE . .    66.59           50.0    26    41.9    62     ARMSSC2 
     LARGE SHIFTS/INSERTIONS    45.85           60.0    10    26.3    38     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .    62.06           41.7    24    38.7    62     ARMSSC2 
     BURIED  . . . . . . . .    71.44           61.9    21    40.4    52     ARMSSC2 
     CORE  . . . . . . . . .    71.43           48.6    35    46.1    76     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    67.00           52.9    17    53.1    32     ARMSSC3 
     WELL ORDERED  . . . . .    63.02           57.1     7    43.8    16     ARMSSC3 
     NO INTER CONTACTS . . .    67.00           52.9    17    54.8    31     ARMSSC3 
     RELIABLE SIDE CHAINS  .    69.02           50.0    16    59.3    27     ARMSSC3 
     CHANGED ANGLES  . . . .    63.68           56.2    16    72.7    22     ARMSSC3 
     SHIFTED CHAIN . . . . .    69.04           50.0    16    57.1    28     ARMSSC3 
     ALTERNATIVE PARENT  . .    61.18           66.7     9    64.3    14     ARMSSC3 
     SECONDARY STRUCTURE . .    76.74           33.3     9    56.2    16     ARMSSC3 
     LARGE SHIFTS/INSERTIONS    13.83          100.0     4    36.4    11     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .    75.05           50.0    10    52.6    19     ARMSSC3 
     BURIED  . . . . . . . .    53.43           57.1     7    53.8    13     ARMSSC3 
     CORE  . . . . . . . . .    76.23           38.5    13    61.9    21     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    92.55           25.0     8    88.9     9     ARMSSC4 
     WELL ORDERED  . . . . .   129.33            0.0     1    50.0     2     ARMSSC4 
     NO INTER CONTACTS . . .    92.55           25.0     8    88.9     9     ARMSSC4 
     RELIABLE SIDE CHAINS  .    92.55           25.0     8    88.9     9     ARMSSC4 
     CHANGED ANGLES  . . . .    93.31           28.6     7    87.5     8     ARMSSC4 
     SHIFTED CHAIN . . . . .    92.55           25.0     8   100.0     8     ARMSSC4 
     ALTERNATIVE PARENT  . .    99.95           20.0     5   100.0     5     ARMSSC4 
     SECONDARY STRUCTURE . .   102.30           20.0     5   100.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS   119.80            0.0     1   100.0     1     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .    89.09           33.3     6    85.7     7     ARMSSC4 
     BURIED  . . . . . . . .   102.23            0.0     2   100.0     2     ARMSSC4 
     CORE  . . . . . . . . .    87.97           28.6     7    87.5     8     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.98170     r(1,2) =  -0.08707     r(1,3) =  -0.16935 
 r(2,1) =  -0.18853     r(2,2) =  -0.56948     r(2,3) =  -0.80009 
 r(3,1) =  -0.02678     r(3,2) =   0.81738     r(3,3) =  -0.57547 
THE OFFSET VECTOR: 
 v(1) =  -9.02934     v(2) =  93.05618     v(3) =  92.20542 
 
 Number of iteration 23                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.04           (Number of atoms:   54) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    3.49         81    35.8   226     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0431                            CRMSCA  
     WELL ORDERED  . . . . .    3.29         57    29.7   192     CRMSCA  
     NO INTER CONTACTS . . .    3.49         81    40.9   198     CRMSCA  
     SHIFTED CHAIN . . . . .    3.57         70    36.5   192     CRMSCA  
     ALTERNATIVE PARENT  . .    3.29         32    35.6    90     CRMSCA  
     SECONDARY STRUCTURE . .    3.66         47    38.5   122     CRMSCA  
     SHIFTED SS UNITS  . . .    1.13         11   100.0    11     CRMSCA  
     LARGE SHIFTS/INSERTIONS    4.83         22    32.4    68     CRMSCA  
     SURFACE . . . . . . . .    3.99         44    38.3   115     CRMSCA  
     BURIED  . . . . . . . .    2.78         37    33.3   111     CRMSCA  
     CORE  . . . . . . . . .    2.84         59    37.3   158     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    3.58        402    36.1  1114     CRMSMC  
     WELL ORDERED  . . . . .    3.35        292    30.7   950     CRMSMC  
     NO INTER CONTACTS . . .    3.58        402    41.2   976     CRMSMC  
     SHIFTED CHAIN . . . . .    3.66        347    36.6   948     CRMSMC  
     ALTERNATIVE PARENT  . .    3.40        158    35.5   445     CRMSMC  
     SECONDARY STRUCTURE . .    3.69        235    38.7   607     CRMSMC  
     SHIFTED SS UNITS  . . .    1.17         55   100.0    55     CRMSMC  
     LARGE SHIFTS/INSERTIONS    4.93        108    32.0   337     CRMSMC  
     SURFACE . . . . . . . .    4.14        218    38.4   567     CRMSMC  
     BURIED  . . . . . . . .    2.78        184    33.6   547     CRMSMC  
     CORE  . . . . . . . . .    2.93        294    37.8   777     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    5.81        319    35.9   889     CRMSSC  
     WELL ORDERED  . . . . .    5.25        194    31.1   623     CRMSSC  
     NO INTER CONTACTS . . .    5.81        319    41.5   769     CRMSSC  
     RELIABLE SIDE CHAINS  .    5.78        279    36.2   771     CRMSSC  
     CHANGED ANGLES  . . . .    6.59        176    38.1   462     CRMSSC  
     SECONDARY STRUCTURE . .    5.42        194    40.7   477     CRMSSC  
     LARGE SHIFTS/INSERTIONS    8.72         84    31.0   271     CRMSSC  
     SURFACE . . . . . . . .    7.00        177    38.1   465     CRMSSC  
     BURIED  . . . . . . . .    3.82        142    33.5   424     CRMSSC  
     CORE  . . . . . . . . .    4.31        235    38.0   618     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    4.75        643    35.9  1793     CRMSALL 
     WELL ORDERED  . . . . .    4.25        432    30.8  1403     CRMSALL 
     NO INTER CONTACTS . . .    4.75        643    41.2  1561     CRMSALL 
     SHIFTED CHAIN . . . . .    4.90        562    36.8  1529     CRMSALL 
     ALTERNATIVE PARENT  . .    4.55        244    34.5   707     CRMSALL 
     SECONDARY STRUCTURE . .    4.58        382    39.6   965     CRMSALL 
     LARGE SHIFTS/INSERTIONS    6.95        172    31.7   543     CRMSALL 
     SURFACE . . . . . . . .    5.68        353    38.2   925     CRMSALL 
     BURIED  . . . . . . . .    3.27        290    33.4   868     CRMSALL 
     CORE  . . . . . . . . .    3.63        471    37.7  1250     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     3.04      3   100.0     3      26-AAF-28   
 CA  LOOP  2     1.88      7   100.0     7      52-STPDEKG-58   
 CA  LOOP  3     7.12      7   100.0     7      79-RILKDHQ-85   
 CA  LOOP  4     0.00      0     0.0     8      95-AWLRDDEE-102  
 CA  LOOP  5     0.00      0     0.0     4     128-NPNR-131  
 CA  LOOP  6     0.00      0     0.0    10     181-VLTAVLQDHG-190  
 CA  LOOP  7     0.00      0     0.0    12     204-EMAKIARDLFCS-215  
 CA  LOOP  8     0.00      0     0.0     5     228-AFAFI-232  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     3.24     15   100.0    15      26-AAF-28   
 MC  LOOP  2     2.07     34   100.0    34      52-STPDEKG-58   
 MC  LOOP  3     7.12     35   100.0    35      79-RILKDHQ-85   
 MC  LOOP  4     0.00      0     0.0    40      95-AWLRDDEE-102  
 MC  LOOP  5     0.00      0     0.0    20     128-NPNR-131  
 MC  LOOP  6     0.00      0     0.0    49     181-VLTAVLQDHG-190  
 MC  LOOP  7     0.00      0     0.0    60     204-EMAKIARDLFCS-215  
 MC  LOOP  8     0.00      0     0.0    25     228-AFAFI-232  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     5.62     21   100.0    21      26-AAF-28   
 ALL LOOP  2     2.71     50   100.0    50      52-STPDEKG-58   
 ALL LOOP  3     8.88     63   100.0    63      79-RILKDHQ-85   
 ALL LOOP  4     0.00      0     0.0    72      95-AWLRDDEE-102  
 ALL LOOP  5     0.00      0     0.0    34     128-NPNR-131  
 ALL LOOP  6     0.00      0     0.0    73     181-VLTAVLQDHG-190  
 ALL LOOP  7     0.00      0     0.0    94     204-EMAKIARDLFCS-215  
 ALL LOOP  8     0.00      0     0.0    40     228-AFAFI-232  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     0.28      3   100.0     3      26-AAF-28   
 CA  LOOP  2     1.27      7   100.0     7      52-STPDEKG-58   
 CA  LOOP  3     3.06      7   100.0     7      79-RILKDHQ-85   
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     1.30     15   100.0    15      26-AAF-28   
 MC  LOOP  2     1.54     34   100.0    34      52-STPDEKG-58   
 MC  LOOP  3     3.44     35   100.0    35      79-RILKDHQ-85   
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     1.54     21   100.0    21      26-AAF-28   
 ALL LOOP  2     2.33     50   100.0    50      52-STPDEKG-58   
 ALL LOOP  3     5.23     63   100.0    63      79-RILKDHQ-85   
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.048      0.507       0.266     81    35.8   226     ERRCA  
     WELL ORDERED  . . . . .    1.791      0.462       0.249     57    29.7   192     ERRCA  
     NO INTER CONTACTS . . .    2.048      0.507       0.266     81    40.9   198     ERRCA  
     SHIFTED CHAIN . . . . .    2.061      0.497       0.263     70    36.5   192     ERRCA  
     ALTERNATIVE PARENT  . .    1.729      0.438       0.245     32    35.6    90     ERRCA  
     SECONDARY STRUCTURE . .    2.161      0.504       0.272     47    38.5   122     ERRCA  
     LARGE SHIFTS/INSERTIONS    3.201      0.557       0.279     22    32.4    68     ERRCA  
     SURFACE . . . . . . . .    2.545      0.575       0.304     44    38.3   115     ERRCA  
     BURIED  . . . . . . . .    1.456      0.427       0.222     37    33.3   111     ERRCA  
     CORE  . . . . . . . . .    1.617      0.489       0.262     59    37.3   158     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.119      0.515       0.268    402    36.1  1114     ERRMC  
     WELL ORDERED  . . . . .    1.868      0.474       0.250    292    30.7   950     ERRMC  
     NO INTER CONTACTS . . .    2.119      0.515       0.268    402    41.2   976     ERRMC  
     SHIFTED CHAIN . . . . .    2.144      0.506       0.265    347    36.6   948     ERRMC  
     ALTERNATIVE PARENT  . .    1.804      0.445       0.242    158    35.5   445     ERRMC  
     SECONDARY STRUCTURE . .    2.183      0.505       0.268    235    38.7   607     ERRMC  
     LARGE SHIFTS/INSERTIONS    3.326      0.582       0.295    108    32.0   337     ERRMC  
     SURFACE . . . . . . . .    2.669      0.583       0.304    218    38.4   567     ERRMC  
     BURIED  . . . . . . . .    1.467      0.435       0.225    184    33.6   547     ERRMC  
     CORE  . . . . . . . . .    1.675      0.491       0.258    294    37.8   777     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.916      0.662       0.333    319    35.9   889     ERRSC  
     WELL ORDERED  . . . . .    3.358      0.619       0.312    194    31.1   623     ERRSC  
     NO INTER CONTACTS . . .    3.916      0.662       0.333    319    41.5   769     ERRSC  
     RELIABLE SIDE CHAINS  .    3.880      0.659       0.331    279    36.2   771     ERRSC  
     CHANGED ANGLES  . . . .    4.638      0.710       0.356    176    38.1   462     ERRSC  
     SHIFTED CHAIN . . . . .    4.026      0.660       0.332    282    37.1   761     ERRSC  
     ALTERNATIVE PARENT  . .    3.822      0.648       0.328    116    33.4   347     ERRSC  
     SECONDARY STRUCTURE . .    3.571      0.652       0.329    194    40.7   477     ERRSC  
     LARGE SHIFTS/INSERTIONS    6.909      0.765       0.382     84    31.0   271     ERRSC  
     SURFACE . . . . . . . .    5.085      0.720       0.363    177    38.1   465     ERRSC  
     BURIED  . . . . . . . .    2.460      0.590       0.295    142    33.5   424     ERRSC  
     CORE  . . . . . . . . .    2.846      0.625       0.315    235    38.0   618     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.954      0.584       0.299    643    35.9  1793     ERRALL 
     WELL ORDERED  . . . . .    2.492      0.536       0.277    432    30.8  1403     ERRALL 
     NO INTER CONTACTS . . .    2.954      0.584       0.299    643    41.2  1561     ERRALL 
     SHIFTED CHAIN . . . . .    3.038      0.580       0.298    562    36.8  1529     ERRALL 
     ALTERNATIVE PARENT  . .    2.712      0.540       0.283    244    34.5   707     ERRALL 
     SECONDARY STRUCTURE . .    2.830      0.573       0.296    382    39.6   965     ERRALL 
     LARGE SHIFTS/INSERTIONS    4.987      0.671       0.338    172    31.7   543     ERRALL 
     SURFACE . . . . . . . .    3.812      0.647       0.332    353    38.2   925     ERRALL 
     BURIED  . . . . . . . .    1.911      0.508       0.259    290    33.4   868     ERRALL 
     CORE  . . . . . . . . .    2.212      0.552       0.285    471    37.7  1250     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        39        50        55        65        81      81     226   DISTCA 
CA  (P)     17.26     22.12     24.34     28.76     35.84             226   DISTCA 
CA  (RMS)    0.60      0.87      1.09      1.95      3.49                   DISTCA 
 
ALL (N)       204       315       379       470       613     643    1793   DISTALL 
ALL (P)     11.38     17.57     21.14     26.21     34.19            1793   DISTALL 
ALL (RMS)    0.61      1.01      1.37      2.14      3.93                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         158            59            22          RMSLSI 
CA  (P)       69.91         26.11          9.73          RMSLSI 
CA  (RMS)      1.56          2.84          4.83          RMSLSI 
 
 
 
END of the results output 
