 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0062.inter 
CONANA-PAIR            ../CONANA/T0062.pair 
# 
NUMBER-OF-PARENTS      6 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0062.2cnd.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0062.1ndh.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0062.1fdr.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0062.1amo_A.rot 
ALIGNMENT-DALI(5)      ../PARENTS/casp3.T0062.1fnc.rot 
ALIGNMENT-DALI(6)      ../PARENTS/casp3.T0062.2pia.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1793 atoms, MODEL 1657 atoms, 1613 common with TARGET 
           Number of atoms possible to evaluate: 196 
 
 
 CA-RMS TARGET<->PARENT(2cnd)	 2.429767 
 
 CA-RMS TARGET<->PARENT(1ndh)	 2.615694 
 
 CA-RMS TARGET<->PARENT(1fdr)	 3.203933 
 
 CA-RMS TARGET<->PARENT(1amo_A)	 2.678109 
 
 CA-RMS TARGET<->PARENT(1fnc)	 2.402750 
 
 CA-RMS TARGET<->PARENT(2pia)	 2.791516 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    75.45           47.9    94    21.0   447     ARMSMC  
     WELL ORDERED  . . . . .    70.62           52.1    71    18.8   377     ARMSMC  
     NO INTER CONTACTS . . .    75.45           47.9    94    24.0   391     ARMSMC  
     SHIFTED CHAIN . . . . .    74.57           45.8    83    21.8   380     ARMSMC  
     ALTERNATIVE PARENT  . .    81.11           46.5    43    23.9   180     ARMSMC  
     SECONDARY STRUCTURE . .    66.62           57.4    47    19.3   244     ARMSMC  
     LARGE SHIFTS/INSERTIONS    81.97           47.8    23    17.0   135     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    75.37           41.2    51    22.4   228     ARMSMC  
     BURIED  . . . . . . . .    75.54           55.8    43    19.6   219     ARMSMC  
     CORE  . . . . . . . . .    73.21           47.9    71    22.8   312     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   163     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   106     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   141     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   150     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0   109     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   137     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    66     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    95     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    89     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   112     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   114     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    69     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   100     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    92     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    91     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    97     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    45     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    62     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    38     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    62     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    32     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    16     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    31     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    27     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    14     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    16     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    11     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    21     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     9     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     5     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     1     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =  -0.68904     r(1,2) =   0.00447     r(1,3) =   0.72471 
 r(2,1) =  -0.34329     r(2,2) =  -0.88270     r(2,3) =  -0.32094 
 r(3,1) =   0.63826     r(3,2) =  -0.46992     r(3,3) =   0.60975 
THE OFFSET VECTOR: 
 v(1) =  13.68932     v(2) =  99.22186     v(3) =  90.40421 
 
 Number of iteration 24                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.37           (Number of atoms:    6) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   10.29         49    21.7   226     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2101                            CRMSCA  
     WELL ORDERED  . . . . .    8.29         37    19.3   192     CRMSCA  
     NO INTER CONTACTS . . .   10.29         49    24.7   198     CRMSCA  
     SHIFTED CHAIN . . . . .   10.41         43    22.4   192     CRMSCA  
     ALTERNATIVE PARENT  . .    7.65         22    24.4    90     CRMSCA  
     SECONDARY STRUCTURE . .    9.17         24    19.7   122     CRMSCA  
     SHIFTED SS UNITS  . . .    9.50         11   100.0    11     CRMSCA  
     LARGE SHIFTS/INSERTIONS    6.65         12    17.6    68     CRMSCA  
     SURFACE . . . . . . . .   11.08         27    23.5   115     CRMSCA  
     BURIED  . . . . . . . .    9.24         22    19.8   111     CRMSCA  
     CORE  . . . . . . . . .   11.22         37    23.4   158     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   10.28        196    17.6  1114     CRMSMC  
     WELL ORDERED  . . . . .    8.22        148    15.6   950     CRMSMC  
     NO INTER CONTACTS . . .   10.28        196    20.1   976     CRMSMC  
     SHIFTED CHAIN . . . . .   10.36        172    18.1   948     CRMSMC  
     ALTERNATIVE PARENT  . .    7.49         88    19.8   445     CRMSMC  
     SECONDARY STRUCTURE . .    9.19         96    15.8   607     CRMSMC  
     SHIFTED SS UNITS  . . .    9.80         44    80.0    55     CRMSMC  
     LARGE SHIFTS/INSERTIONS    6.69         48    14.2   337     CRMSMC  
     SURFACE . . . . . . . .   10.95        108    19.0   567     CRMSMC  
     BURIED  . . . . . . . .    9.39         88    16.1   547     CRMSMC  
     CORE  . . . . . . . . .   11.20        148    19.0   777     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   889     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   623     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   769     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   771     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   462     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   477     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   271     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   465     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   424     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   618     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   10.28        196    10.9  1793     CRMSALL 
     WELL ORDERED  . . . . .    8.22        148    10.5  1403     CRMSALL 
     NO INTER CONTACTS . . .   10.28        196    12.6  1561     CRMSALL 
     SHIFTED CHAIN . . . . .   10.36        172    11.2  1529     CRMSALL 
     ALTERNATIVE PARENT  . .    7.49         88    12.4   707     CRMSALL 
     SECONDARY STRUCTURE . .    9.19         96     9.9   965     CRMSALL 
     LARGE SHIFTS/INSERTIONS    6.69         48     8.8   543     CRMSALL 
     SURFACE . . . . . . . .   10.95        108    11.7   925     CRMSALL 
     BURIED  . . . . . . . .    9.39         88    10.1   868     CRMSALL 
     CORE  . . . . . . . . .   11.20        148    11.8  1250     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     7.76      3   100.0     3      26-AAF-28   
 CA  LOOP  2     3.06      5    71.4     7      52-STPDEKG-58   
 CA  LOOP  3     0.00      0     0.0     7      79-RILKDHQ-85   
 CA  LOOP  4     0.00      0     0.0     8      95-AWLRDDEE-102  
 CA  LOOP  5     0.00      0     0.0     4     128-NPNR-131  
 CA  LOOP  6     0.00      0     0.0    10     181-VLTAVLQDHG-190  
 CA  LOOP  7     0.00      0     0.0    12     204-EMAKIARDLFCS-215  
 CA  LOOP  8     0.00      0     0.0     5     228-AFAFI-232  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     8.00     12    80.0    15      26-AAF-28   
 MC  LOOP  2     2.76     20    58.8    34      52-STPDEKG-58   
 MC  LOOP  3     0.00      0     0.0    35      79-RILKDHQ-85   
 MC  LOOP  4     0.00      0     0.0    40      95-AWLRDDEE-102  
 MC  LOOP  5     0.00      0     0.0    20     128-NPNR-131  
 MC  LOOP  6     0.00      0     0.0    49     181-VLTAVLQDHG-190  
 MC  LOOP  7     0.00      0     0.0    60     204-EMAKIARDLFCS-215  
 MC  LOOP  8     0.00      0     0.0    25     228-AFAFI-232  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     8.00     12    57.1    21      26-AAF-28   
 ALL LOOP  2     2.76     20    40.0    50      52-STPDEKG-58   
 ALL LOOP  3     0.00      0     0.0    63      79-RILKDHQ-85   
 ALL LOOP  4     0.00      0     0.0    72      95-AWLRDDEE-102  
 ALL LOOP  5     0.00      0     0.0    34     128-NPNR-131  
 ALL LOOP  6     0.00      0     0.0    73     181-VLTAVLQDHG-190  
 ALL LOOP  7     0.00      0     0.0    94     204-EMAKIARDLFCS-215  
 ALL LOOP  8     0.00      0     0.0    40     228-AFAFI-232  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     0.22      3   100.0     3      26-AAF-28   
 CA  LOOP  2     2.30      5    71.4     7      52-STPDEKG-58   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     1.08     12    80.0    15      26-AAF-28   
 MC  LOOP  2     2.13     20    58.8    34      52-STPDEKG-58   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     1.08     12    57.1    21      26-AAF-28   
 ALL LOOP  2     2.13     20    40.0    50      52-STPDEKG-58   
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  5 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  6 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  7 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    8.966      1.000       0.500     49    21.7   226     ERRCA  
     WELL ORDERED  . . . . .    7.542      1.000       0.500     37    19.3   192     ERRCA  
     NO INTER CONTACTS . . .    8.966      1.000       0.500     49    24.7   198     ERRCA  
     SHIFTED CHAIN . . . . .    8.913      1.000       0.500     43    22.4   192     ERRCA  
     ALTERNATIVE PARENT  . .    6.541      1.000       0.500     22    24.4    90     ERRCA  
     SECONDARY STRUCTURE . .    8.454      1.000       0.500     24    19.7   122     ERRCA  
     LARGE SHIFTS/INSERTIONS    5.386      1.000       0.500     12    17.6    68     ERRCA  
     SURFACE . . . . . . . .    9.352      1.000       0.500     27    23.5   115     ERRCA  
     BURIED  . . . . . . . .    8.492      1.000       0.500     22    19.8   111     ERRCA  
     CORE  . . . . . . . . .   10.127      1.000       0.500     37    23.4   158     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    8.934      1.000       0.500    196    17.6  1114     ERRMC  
     WELL ORDERED  . . . . .    7.534      1.000       0.500    148    15.6   950     ERRMC  
     NO INTER CONTACTS . . .    8.934      1.000       0.500    196    20.1   976     ERRMC  
     SHIFTED CHAIN . . . . .    8.840      1.000       0.500    172    18.1   948     ERRMC  
     ALTERNATIVE PARENT  . .    6.412      1.000       0.500     88    19.8   445     ERRMC  
     SECONDARY STRUCTURE . .    8.418      1.000       0.500     96    15.8   607     ERRMC  
     LARGE SHIFTS/INSERTIONS    5.387      1.000       0.500     48    14.2   337     ERRMC  
     SURFACE . . . . . . . .    9.333      1.000       0.500    108    19.0   567     ERRMC  
     BURIED  . . . . . . . .    8.444      1.000       0.500     88    16.1   547     ERRMC  
     CORE  . . . . . . . . .   10.084      1.000       0.500    148    19.0   777     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   889     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   623     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   769     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   771     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   462     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   761     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0   347     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   477     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   271     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   465     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   424     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   618     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    8.934      1.000       0.500    196    10.9  1793     ERRALL 
     WELL ORDERED  . . . . .    7.534      1.000       0.500    148    10.5  1403     ERRALL 
     NO INTER CONTACTS . . .    8.934      1.000       0.500    196    12.6  1561     ERRALL 
     SHIFTED CHAIN . . . . .    8.840      1.000       0.500    172    11.2  1529     ERRALL 
     ALTERNATIVE PARENT  . .    6.412      1.000       0.500     88    12.4   707     ERRALL 
     SECONDARY STRUCTURE . .    8.418      1.000       0.500     96     9.9   965     ERRALL 
     LARGE SHIFTS/INSERTIONS    5.387      1.000       0.500     48     8.8   543     ERRALL 
     SURFACE . . . . . . . .    9.333      1.000       0.500    108    11.7   925     ERRALL 
     BURIED  . . . . . . . .    8.444      1.000       0.500     88    10.1   868     ERRALL 
     CORE  . . . . . . . . .   10.084      1.000       0.500    148    11.8  1250     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         3         5         6        10        30      49     226   DISTCA 
CA  (P)      1.33      2.21      2.65      4.42     13.27             226   DISTCA 
CA  (RMS)    0.64      1.17      1.37      2.81      6.66                   DISTCA 
 
ALL (N)         3        12        29        50       121     196    1793   DISTALL 
ALL (P)      0.17      0.67      1.62      2.79      6.75            1793   DISTALL 
ALL (RMS)    0.64      1.46      2.14      3.12      6.62                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         158            37            12          RMSLSI 
CA  (P)       69.91         16.37          5.31          RMSLSI 
CA  (RMS)      1.56         11.22          6.65          RMSLSI 
 
 
 
END of the results output 
