 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0062.inter 
CONANA-PAIR            ../CONANA/T0062.pair 
# 
NUMBER-OF-PARENTS      6 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0062.2cnd.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0062.1ndh.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0062.1fdr.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0062.1amo_A.rot 
ALIGNMENT-DALI(5)      ../PARENTS/casp3.T0062.1fnc.rot 
ALIGNMENT-DALI(6)      ../PARENTS/casp3.T0062.2pia.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 1793 atoms, MODEL 1345 atoms, 1301 common with TARGET 
           Number of atoms possible to evaluate: 500 
 
 
 CA-RMS TARGET<->PARENT(2cnd)	 2.429767 
 
 CA-RMS TARGET<->PARENT(1ndh)	 2.615694 
 
 CA-RMS TARGET<->PARENT(1fdr)	 3.203933 
 
 CA-RMS TARGET<->PARENT(1amo_A)	 2.678109 
 
 CA-RMS TARGET<->PARENT(1fnc)	 2.402750 
 
 CA-RMS TARGET<->PARENT(2pia)	 2.791516 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    48.35           75.4   236    52.8   447     ARMSMC  
     WELL ORDERED  . . . . .    49.67           74.2   221    58.6   377     ARMSMC  
     NO INTER CONTACTS . . .    45.76           75.8   186    47.6   391     ARMSMC  
     SHIFTED CHAIN . . . . .    49.16           76.4   195    51.3   380     ARMSMC  
     ALTERNATIVE PARENT  . .    52.83           77.2    92    51.1   180     ARMSMC  
     SECONDARY STRUCTURE . .    56.13           71.1   142    58.2   244     ARMSMC  
     LARGE SHIFTS/INSERTIONS    56.75           76.1    67    49.6   135     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    43.56           79.3   111    48.7   228     ARMSMC  
     BURIED  . . . . . . . .    52.23           72.0   125    57.1   219     ARMSMC  
     CORE  . . . . . . . . .    44.58           75.1   169    54.2   312     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   163     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   106     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   141     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   150     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0   109     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0   137     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    66     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    95     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    51     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    89     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0   112     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   114     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    69     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0   100     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    92     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    91     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    97     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    45     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    62     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    38     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    62     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    76     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    32     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    16     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    31     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    27     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    14     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    16     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    11     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    21     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0     9     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     9     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     5     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     1     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =  -0.82758     r(1,2) =  -0.26435     r(1,3) =  -0.49522 
 r(2,1) =   0.24391     r(2,2) =  -0.96389     r(2,3) =   0.10692 
 r(3,1) =  -0.50560     r(3,2) =  -0.03230     r(3,3) =   0.86217 
THE OFFSET VECTOR: 
 v(1) =  37.60100     v(2) =  61.39708     v(3) = 104.25382 
 
 Number of iteration 39                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.26           (Number of atoms:   88) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    2.74        125    55.3   226     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0219                            CRMSCA  
     WELL ORDERED  . . . . .    2.64        118    61.5   192     CRMSCA  
     NO INTER CONTACTS . . .    2.78         97    49.0   198     CRMSCA  
     SHIFTED CHAIN . . . . .    2.98        104    54.2   192     CRMSCA  
     ALTERNATIVE PARENT  . .    3.56         51    56.7    90     CRMSCA  
     SECONDARY STRUCTURE . .    2.15         71    58.2   122     CRMSCA  
     SHIFTED SS UNITS  . . .    0.00          0     0.0    11     CRMSCA  
     LARGE SHIFTS/INSERTIONS    4.16         35    51.5    68     CRMSCA  
     SURFACE . . . . . . . .    3.09         59    51.3   115     CRMSCA  
     BURIED  . . . . . . . .    2.38         66    59.5   111     CRMSCA  
     CORE  . . . . . . . . .    1.92         90    57.0   158     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    2.69        500    44.9  1114     CRMSMC  
     WELL ORDERED  . . . . .    2.62        476    50.1   950     CRMSMC  
     NO INTER CONTACTS . . .    2.75        388    39.8   976     CRMSMC  
     SHIFTED CHAIN . . . . .    2.91        416    43.9   948     CRMSMC  
     ALTERNATIVE PARENT  . .    3.44        204    45.8   445     CRMSMC  
     SECONDARY STRUCTURE . .    2.08        284    46.8   607     CRMSMC  
     SHIFTED SS UNITS  . . .    0.00          0     0.0    55     CRMSMC  
     LARGE SHIFTS/INSERTIONS    4.07        140    41.5   337     CRMSMC  
     SURFACE . . . . . . . .    3.06        236    41.6   567     CRMSMC  
     BURIED  . . . . . . . .    2.31        264    48.3   547     CRMSMC  
     CORE  . . . . . . . . .    1.90        360    46.3   777     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   889     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   623     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   769     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   771     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   462     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   477     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   271     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   465     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   424     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   618     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    2.69        500    27.9  1793     CRMSALL 
     WELL ORDERED  . . . . .    2.62        476    33.9  1403     CRMSALL 
     NO INTER CONTACTS . . .    2.75        388    24.9  1561     CRMSALL 
     SHIFTED CHAIN . . . . .    2.91        416    27.2  1529     CRMSALL 
     ALTERNATIVE PARENT  . .    3.44        204    28.9   707     CRMSALL 
     SECONDARY STRUCTURE . .    2.08        284    29.4   965     CRMSALL 
     LARGE SHIFTS/INSERTIONS    4.07        140    25.8   543     CRMSALL 
     SURFACE . . . . . . . .    3.06        236    25.5   925     CRMSALL 
     BURIED  . . . . . . . .    2.31        264    30.4   868     CRMSALL 
     CORE  . . . . . . . . .    1.90        360    28.8  1250     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     0.00      0     0.0     3      26-AAF-28   
 CA  LOOP  2     0.00      0     0.0     7      52-STPDEKG-58   
 CA  LOOP  3     0.00      0     0.0     7      79-RILKDHQ-85   
 CA  LOOP  4     4.58      2    25.0     8      95-AWLRDDEE-102  
 CA  LOOP  5     3.76      4   100.0     4     128-NPNR-131  
 CA  LOOP  6     4.64     10   100.0    10     181-VLTAVLQDHG-190  
 CA  LOOP  7     3.42     12   100.0    12     204-EMAKIARDLFCS-215  
 CA  LOOP  8     0.00      0     0.0     5     228-AFAFI-232  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     0.00      0     0.0    15      26-AAF-28   
 MC  LOOP  2     0.00      0     0.0    34      52-STPDEKG-58   
 MC  LOOP  3     0.00      0     0.0    35      79-RILKDHQ-85   
 MC  LOOP  4     4.79      8    20.0    40      95-AWLRDDEE-102  
 MC  LOOP  5     4.36     16    80.0    20     128-NPNR-131  
 MC  LOOP  6     4.47     40    81.6    49     181-VLTAVLQDHG-190  
 MC  LOOP  7     3.29     48    80.0    60     204-EMAKIARDLFCS-215  
 MC  LOOP  8     0.00      0     0.0    25     228-AFAFI-232  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     0.00      0     0.0    21      26-AAF-28   
 ALL LOOP  2     0.00      0     0.0    50      52-STPDEKG-58   
 ALL LOOP  3     0.00      0     0.0    63      79-RILKDHQ-85   
 ALL LOOP  4     4.79      8    11.1    72      95-AWLRDDEE-102  
 ALL LOOP  5     4.36     16    47.1    34     128-NPNR-131  
 ALL LOOP  6     4.47     40    54.8    73     181-VLTAVLQDHG-190  
 ALL LOOP  7     3.29     48    51.1    94     204-EMAKIARDLFCS-215  
 ALL LOOP  8     0.00      0     0.0    40     228-AFAFI-232  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 CA  LOOP  5     1.97      4   100.0     4     128-NPNR-131  
 CA  LOOP  6     1.89     10   100.0    10     181-VLTAVLQDHG-190  
 CA  LOOP  7     1.84     12   100.0    12     204-EMAKIARDLFCS-215  
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 MC  LOOP  5     2.52     16    80.0    20     128-NPNR-131  
 MC  LOOP  6     1.86     40    81.6    49     181-VLTAVLQDHG-190  
 MC  LOOP  7     1.70     48    80.0    60     204-EMAKIARDLFCS-215  
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  4 cannot be considered (not enough atoms). 
 
 ALL LOOP  5     2.52     16    47.1    34     128-NPNR-131  
 ALL LOOP  6     1.86     40    54.8    73     181-VLTAVLQDHG-190  
 ALL LOOP  7     1.70     48    51.1    94     204-EMAKIARDLFCS-215  
 WARNING! LOOP  8 cannot be considered (not enough atoms). 
 
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.106      1.000       0.500    125    55.3   226     ERRCA  
     WELL ORDERED  . . . . .    2.040      1.000       0.500    118    61.5   192     ERRCA  
     NO INTER CONTACTS . . .    2.110      1.000       0.500     97    49.0   198     ERRCA  
     SHIFTED CHAIN . . . . .    2.384      1.000       0.500    104    54.2   192     ERRCA  
     ALTERNATIVE PARENT  . .    3.033      1.000       0.500     51    56.7    90     ERRCA  
     SECONDARY STRUCTURE . .    1.735      1.000       0.500     71    58.2   122     ERRCA  
     LARGE SHIFTS/INSERTIONS    3.784      1.000       0.500     35    51.5    68     ERRCA  
     SURFACE . . . . . . . .    2.415      1.000       0.500     59    51.3   115     ERRCA  
     BURIED  . . . . . . . .    1.831      1.000       0.500     66    59.5   111     ERRCA  
     CORE  . . . . . . . . .    1.454      1.000       0.500     90    57.0   158     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.071      1.000       0.500    500    44.9  1114     ERRMC  
     WELL ORDERED  . . . . .    2.028      1.000       0.500    476    50.1   950     ERRMC  
     NO INTER CONTACTS . . .    2.079      1.000       0.500    388    39.8   976     ERRMC  
     SHIFTED CHAIN . . . . .    2.308      1.000       0.500    416    43.9   948     ERRMC  
     ALTERNATIVE PARENT  . .    2.920      1.000       0.500    204    45.8   445     ERRMC  
     SECONDARY STRUCTURE . .    1.706      1.000       0.500    284    46.8   607     ERRMC  
     LARGE SHIFTS/INSERTIONS    3.673      1.000       0.500    140    41.5   337     ERRMC  
     SURFACE . . . . . . . .    2.388      1.000       0.500    236    41.6   567     ERRMC  
     BURIED  . . . . . . . .    1.788      1.000       0.500    264    48.3   547     ERRMC  
     CORE  . . . . . . . . .    1.448      1.000       0.500    360    46.3   777     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   889     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   623     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   769     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   771     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   462     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   761     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0   347     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   477     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   271     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   465     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   424     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   618     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.071      1.000       0.500    500    27.9  1793     ERRALL 
     WELL ORDERED  . . . . .    2.028      1.000       0.500    476    33.9  1403     ERRALL 
     NO INTER CONTACTS . . .    2.079      1.000       0.500    388    24.9  1561     ERRALL 
     SHIFTED CHAIN . . . . .    2.308      1.000       0.500    416    27.2  1529     ERRALL 
     ALTERNATIVE PARENT  . .    2.920      1.000       0.500    204    28.9   707     ERRALL 
     SECONDARY STRUCTURE . .    1.706      1.000       0.500    284    29.4   965     ERRALL 
     LARGE SHIFTS/INSERTIONS    3.673      1.000       0.500    140    25.8   543     ERRALL 
     SURFACE . . . . . . . .    2.388      1.000       0.500    236    25.5   925     ERRALL 
     BURIED  . . . . . . . .    1.788      1.000       0.500    264    30.4   868     ERRALL 
     CORE  . . . . . . . . .    1.448      1.000       0.500    360    28.8  1250     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        43        80        95       114       125     125     226   DISTCA 
CA  (P)     19.03     35.40     42.04     50.44     55.31             226   DISTCA 
CA  (RMS)    0.74      1.09      1.43      2.09      2.74                   DISTCA 
 
ALL (N)       164       317       384       461       500     500    1793   DISTALL 
ALL (P)      9.15     17.68     21.42     25.71     27.89            1793   DISTALL 
ALL (RMS)    0.73      1.09      1.44      2.07      2.69                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)         158            90            35          RMSLSI 
CA  (P)       69.91         39.82         15.49          RMSLSI 
CA  (RMS)      1.56          1.92          4.16          RMSLSI 
 
 
 
END of the results output 
