 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0055.inter 
CONANA-PAIR            ../CONANA/T0055.pair 
# 
NUMBER-OF-PARENTS      4 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0055.1esl.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0055.1lit.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0055.1rtm_1.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0055.1htn.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 966 atoms, MODEL 982 atoms, 966 common with TARGET 
           Number of atoms possible to evaluate: 921 
 
 
 CA-RMS TARGET<->PARENT(1esl)	 2.181936 
 
 CA-RMS TARGET<->PARENT(1lit)	 3.321523 
 
 CA-RMS TARGET<->PARENT(1rtm-1)	 2.161827 
 
 CA-RMS TARGET<->PARENT(1htn)	 1.879763 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    65.78           55.6   234    95.9   244     ARMSMC  
     WELL ORDERED  . . . . .    65.41           55.1   227    96.6   235     ARMSMC  
     NO INTER CONTACTS . . .    62.26           61.3   163    99.4   164     ARMSMC  
     SHIFTED CHAIN . . . . .    70.67           44.7   141    94.0   150     ARMSMC  
     ALTERNATIVE PARENT  . .    88.38           31.8    44    95.7    46     ARMSMC  
     SECONDARY STRUCTURE . .    52.82           68.5   108    94.7   114     ARMSMC  
     LARGE SHIFTS/INSERTIONS    86.90           32.9    76    97.4    78     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    71.69           45.4   130    94.2   138     ARMSMC  
     BURIED  . . . . . . . .    57.55           68.3   104    98.1   106     ARMSMC  
     CORE  . . . . . . . . .    52.70           66.5   158    95.2   166     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    80.55           36.0   100    95.2   105     ARMSSC1 
     WELL ORDERED  . . . . .    81.06           34.4    96    96.0   100     ARMSSC1 
     NO INTER CONTACTS . . .    82.47           37.3    67   100.0    67     ARMSSC1 
     RELIABLE SIDE CHAINS  .    78.93           34.8    92    94.8    97     ARMSSC1 
     CHANGED ANGLES  . . . .    89.22           23.6    55    93.2    59     ARMSSC1 
     SHIFTED CHAIN . . . . .    81.83           29.0    62    92.5    67     ARMSSC1 
     ALTERNATIVE PARENT  . .    87.61           11.1    18    90.0    20     ARMSSC1 
     SECONDARY STRUCTURE . .    79.98           41.7    48    96.0    50     ARMSSC1 
     LARGE SHIFTS/INSERTIONS    87.65           12.1    33    94.3    35     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .    82.05           34.0    53    93.0    57     ARMSSC1 
     BURIED  . . . . . . . .    78.84           38.3    47    97.9    48     ARMSSC1 
     CORE  . . . . . . . . .    76.81           47.8    67    95.7    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    71.57           36.1    72    93.5    77     ARMSSC2 
     WELL ORDERED  . . . . .    71.28           36.2    69    94.5    73     ARMSSC2 
     NO INTER CONTACTS . . .    71.47           35.6    45   100.0    45     ARMSSC2 
     RELIABLE SIDE CHAINS  .    67.29           38.9    54    93.1    58     ARMSSC2 
     CHANGED ANGLES  . . . .    76.83           20.8    48    90.6    53     ARMSSC2 
     SHIFTED CHAIN . . . . .    73.56           26.1    46    90.2    51     ARMSSC2 
     ALTERNATIVE PARENT  . .    79.26           13.3    15    88.2    17     ARMSSC2 
     SECONDARY STRUCTURE . .    68.36           48.5    33    94.3    35     ARMSSC2 
     LARGE SHIFTS/INSERTIONS    82.17           13.0    23    92.0    25     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .    76.72           23.1    39    90.7    43     ARMSSC2 
     BURIED  . . . . . . . .    64.95           51.5    33    97.1    34     ARMSSC2 
     CORE  . . . . . . . . .    66.01           46.9    49    94.2    52     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    89.20           36.4    22    95.7    23     ARMSSC3 
     WELL ORDERED  . . . . .    95.41           31.6    19    95.0    20     ARMSSC3 
     NO INTER CONTACTS . . .    91.50           27.3    11   100.0    11     ARMSSC3 
     RELIABLE SIDE CHAINS  .    83.63           35.3    17    94.4    18     ARMSSC3 
     CHANGED ANGLES  . . . .    97.67           27.8    18    94.7    19     ARMSSC3 
     SHIFTED CHAIN . . . . .    99.32           35.7    14    93.3    15     ARMSSC3 
     ALTERNATIVE PARENT  . .    82.75           40.0     5   100.0     5     ARMSSC3 
     SECONDARY STRUCTURE . .    67.93           38.5    13    92.9    14     ARMSSC3 
     LARGE SHIFTS/INSERTIONS   111.81           25.0     8   100.0     8     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .    85.03           38.5    13    92.9    14     ARMSSC3 
     BURIED  . . . . . . . .    94.91           33.3     9   100.0     9     ARMSSC3 
     CORE  . . . . . . . . .    73.22           42.9    14    93.3    15     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .   129.07            0.0     8   100.0     8     ARMSSC4 
     WELL ORDERED  . . . . .   128.55            0.0     7   100.0     7     ARMSSC4 
     NO INTER CONTACTS . . .   135.61            0.0     4   100.0     4     ARMSSC4 
     RELIABLE SIDE CHAINS  .   129.07            0.0     8   100.0     8     ARMSSC4 
     CHANGED ANGLES  . . . .   124.32            0.0     7   100.0     7     ARMSSC4 
     SHIFTED CHAIN . . . . .   124.81            0.0     4   100.0     4     ARMSSC4 
     ALTERNATIVE PARENT  . .   123.55            0.0     2   100.0     2     ARMSSC4 
     SECONDARY STRUCTURE . .   136.98            0.0     5   100.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS    93.03            0.0     3   100.0     3     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .   118.32            0.0     6   100.0     6     ARMSSC4 
     BURIED  . . . . . . . .   156.96            0.0     2   100.0     2     ARMSSC4 
     CORE  . . . . . . . . .   146.50            0.0     5   100.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =  -0.47770     r(1,2) =   0.85064     r(1,3) =  -0.21957 
 r(2,1) =  -0.12298     r(2,2) =  -0.31222     r(2,3) =  -0.94202 
 r(3,1) =  -0.86987     r(3,2) =  -0.42300     r(3,3) =   0.25376 
THE OFFSET VECTOR: 
 v(1) =  34.23088     v(2) =  21.68044     v(3) =  33.57952 
 
 Number of iteration 36                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.35           (Number of atoms:   62) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    7.26        118    95.9   123     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0615                            CRMSCA  
     WELL ORDERED  . . . . .    7.35        115    96.6   119     CRMSCA  
     NO INTER CONTACTS . . .    7.81         82   100.0    82     CRMSCA  
     SHIFTED CHAIN . . . . .    6.38         71    93.4    76     CRMSCA  
     ALTERNATIVE PARENT  . .    5.07         22    91.7    24     CRMSCA  
     SECONDARY STRUCTURE . .    8.42         55    96.5    57     CRMSCA  
     SHIFTED SS UNITS  . . .    2.47         10   100.0    10     CRMSCA  
     LARGE SHIFTS/INSERTIONS    5.24         38    95.0    40     CRMSCA  
     SURFACE . . . . . . . .    7.47         66    94.3    70     CRMSCA  
     BURIED  . . . . . . . .    6.98         52    98.1    53     CRMSCA  
     CORE  . . . . . . . . .    8.04         80    96.4    83     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    7.27        581    95.9   606     CRMSMC  
     WELL ORDERED  . . . . .    7.27        565    96.7   584     CRMSMC  
     NO INTER CONTACTS . . .    7.77        402   100.0   402     CRMSMC  
     SHIFTED CHAIN . . . . .    6.36        350    93.3   375     CRMSMC  
     ALTERNATIVE PARENT  . .    5.12        107    91.5   117     CRMSMC  
     SECONDARY STRUCTURE . .    8.55        273    96.5   283     CRMSMC  
     SHIFTED SS UNITS  . . .    2.49         50   100.0    50     CRMSMC  
     LARGE SHIFTS/INSERTIONS    5.33        187    94.9   197     CRMSMC  
     SURFACE . . . . . . . .    7.37        322    94.2   342     CRMSMC  
     BURIED  . . . . . . . .    7.13        259    98.1   264     CRMSMC  
     CORE  . . . . . . . . .    8.02        394    96.3   409     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    8.47        449    94.7   474     CRMSSC  
     WELL ORDERED  . . . . .    8.01        430    95.3   451     CRMSSC  
     NO INTER CONTACTS . . .    9.13        293   100.0   293     CRMSSC  
     RELIABLE SIDE CHAINS  .    8.62        385    94.4   408     CRMSSC  
     CHANGED ANGLES  . . . .    9.76        223    92.1   242     CRMSSC  
     SECONDARY STRUCTURE . .   10.14        222    94.5   235     CRMSSC  
     LARGE SHIFTS/INSERTIONS    7.53        150    94.9   158     CRMSSC  
     SURFACE . . . . . . . .    8.94        233    93.2   250     CRMSSC  
     BURIED  . . . . . . . .    7.94        216    96.4   224     CRMSSC  
     CORE  . . . . . . . . .    8.91        299    94.6   316     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    7.85        921    95.3   966     CRMSALL 
     WELL ORDERED  . . . . .    7.64        890    96.1   926     CRMSALL 
     NO INTER CONTACTS . . .    8.40        621   100.0   621     CRMSALL 
     SHIFTED CHAIN . . . . .    7.36        558    92.5   603     CRMSALL 
     ALTERNATIVE PARENT  . .    6.30        175    91.6   191     CRMSALL 
     SECONDARY STRUCTURE . .    9.33        442    95.5   463     CRMSALL 
     LARGE SHIFTS/INSERTIONS    6.43        302    95.0   318     CRMSALL 
     SURFACE . . . . . . . .    8.12        497    93.8   530     CRMSALL 
     BURIED  . . . . . . . .    7.51        424    97.2   436     CRMSALL 
     CORE  . . . . . . . . .    8.45        619    95.5   648     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     3.87      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     4.45      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3     5.78      6   100.0     6      60-LQDGAY-65   
 CA  LOOP  4     7.25      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     3.55      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     6.96      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     3.96     45   100.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     4.45     34   100.0    34      45-FTEVKGH-51   
 MC  LOOP  3     5.77     29   100.0    29      60-LQDGAY-65   
 MC  LOOP  4     7.29     25   100.0    25      76-PTDSD-80   
 MC  LOOP  5     3.81     20   100.0    20      90-PQSW-93   
 MC  LOOP  6     7.21     25   100.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     5.72     66   100.0    66      31-SAMRDSTMV-39   
 ALL LOOP  2     5.65     57   100.0    57      45-FTEVKGH-51   
 ALL LOOP  3     6.18     46   100.0    46      60-LQDGAY-65   
 ALL LOOP  4     7.50     36   100.0    36      76-PTDSD-80   
 ALL LOOP  5     5.05     36   100.0    36      90-PQSW-93   
 ALL LOOP  6     8.62     49   100.0    49     100-WSKYN-104  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     2.84      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     3.11      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3     3.12      6   100.0     6      60-LQDGAY-65   
 CA  LOOP  4     1.94      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     2.17      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     2.20      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     3.04     45   100.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     3.21     34   100.0    34      45-FTEVKGH-51   
 MC  LOOP  3     3.32     29   100.0    29      60-LQDGAY-65   
 MC  LOOP  4     2.23     25   100.0    25      76-PTDSD-80   
 MC  LOOP  5     2.88     20   100.0    20      90-PQSW-93   
 MC  LOOP  6     2.52     25   100.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     4.84     66   100.0    66      31-SAMRDSTMV-39   
 ALL LOOP  2     4.46     57   100.0    57      45-FTEVKGH-51   
 ALL LOOP  3     5.00     46   100.0    46      60-LQDGAY-65   
 ALL LOOP  4     3.39     36   100.0    36      76-PTDSD-80   
 ALL LOOP  5     4.81     36   100.0    36      90-PQSW-93   
 ALL LOOP  6     5.59     49   100.0    49     100-WSKYN-104  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.829      0.439       0.235    118    95.9   123     ERRCA  
     WELL ORDERED  . . . . .    3.918      0.446       0.239    115    96.6   119     ERRCA  
     NO INTER CONTACTS . . .    4.021      0.421       0.227     82   100.0    82     ERRCA  
     SHIFTED CHAIN . . . . .    3.386      0.474       0.246     71    93.4    76     ERRCA  
     ALTERNATIVE PARENT  . .    3.549      0.565       0.283     22    91.7    24     ERRCA  
     SECONDARY STRUCTURE . .    4.388      0.437       0.246     55    96.5    57     ERRCA  
     LARGE SHIFTS/INSERTIONS    3.820      0.610       0.305     38    95.0    40     ERRCA  
     SURFACE . . . . . . . .    4.104      0.481       0.244     66    94.3    70     ERRCA  
     BURIED  . . . . . . . .    3.480      0.386       0.224     52    98.1    53     ERRCA  
     CORE  . . . . . . . . .    3.833      0.358       0.202     80    96.4    83     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.839      0.445       0.241    581    95.9   606     ERRMC  
     WELL ORDERED  . . . . .    3.885      0.451       0.244    565    96.7   584     ERRMC  
     NO INTER CONTACTS . . .    4.018      0.432       0.239    402   100.0   402     ERRMC  
     SHIFTED CHAIN . . . . .    3.384      0.474       0.249    350    93.3   375     ERRMC  
     ALTERNATIVE PARENT  . .    3.571      0.568       0.287    107    91.5   117     ERRMC  
     SECONDARY STRUCTURE . .    4.469      0.443       0.250    273    96.5   283     ERRMC  
     LARGE SHIFTS/INSERTIONS    3.846      0.605       0.304    187    94.9   197     ERRMC  
     SURFACE . . . . . . . .    4.036      0.485       0.250    322    94.2   342     ERRMC  
     BURIED  . . . . . . . .    3.593      0.396       0.230    259    98.1   264     ERRMC  
     CORE  . . . . . . . . .    3.835      0.369       0.211    394    96.3   409     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.924      0.523       0.266    449    94.7   474     ERRSC  
     WELL ORDERED  . . . . .    4.749      0.524       0.266    430    95.3   451     ERRSC  
     NO INTER CONTACTS . . .    5.031      0.496       0.254    293   100.0   293     ERRSC  
     RELIABLE SIDE CHAINS  .    4.914      0.512       0.260    385    94.4   408     ERRSC  
     CHANGED ANGLES  . . . .    6.128      0.607       0.305    223    92.1   242     ERRSC  
     SHIFTED CHAIN . . . . .    5.051      0.575       0.291    274    91.6   299     ERRSC  
     ALTERNATIVE PARENT  . .    5.422      0.658       0.329     87    91.6    95     ERRSC  
     SECONDARY STRUCTURE . .    5.738      0.515       0.265    222    94.5   235     ERRSC  
     LARGE SHIFTS/INSERTIONS    5.772      0.693       0.347    150    94.9   158     ERRSC  
     SURFACE . . . . . . . .    5.493      0.594       0.300    233    93.2   250     ERRSC  
     BURIED  . . . . . . . .    4.309      0.446       0.230    216    96.4   224     ERRSC  
     CORE  . . . . . . . . .    4.498      0.438       0.225    299    94.6   316     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.333      0.480       0.252    921    95.3   966     ERRALL 
     WELL ORDERED  . . . . .    4.286      0.483       0.254    890    96.1   926     ERRALL 
     NO INTER CONTACTS . . .    4.461      0.459       0.245    621   100.0   621     ERRALL 
     SHIFTED CHAIN . . . . .    4.151      0.519       0.267    558    92.5   603     ERRALL 
     ALTERNATIVE PARENT  . .    4.410      0.608       0.306    175    91.6   191     ERRALL 
     SECONDARY STRUCTURE . .    5.057      0.476       0.258    442    95.5   463     ERRALL 
     LARGE SHIFTS/INSERTIONS    4.702      0.642       0.322    302    95.0   318     ERRALL 
     SURFACE . . . . . . . .    4.688      0.532       0.272    497    93.8   530     ERRALL 
     BURIED  . . . . . . . .    3.917      0.418       0.230    424    97.2   436     ERRALL 
     CORE  . . . . . . . . .    4.153      0.400       0.218    619    95.5   648     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        25        56        66        86       100     118     123   DISTCA 
CA  (P)     20.33     45.53     53.66     69.92     81.30             123   DISTCA 
CA  (RMS)    0.75      1.23      1.48      2.28      3.42                   DISTCA 
 
ALL (N)       122       360       465       617       775     921     966   DISTALL 
ALL (P)     12.63     37.27     48.14     63.87     80.23             966   DISTALL 
ALL (RMS)    0.74      1.26      1.61      2.42      3.94                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)          83            80            38          RMSLSI 
CA  (P)       67.48         65.04         30.89          RMSLSI 
CA  (RMS)      1.17          8.04          5.24          RMSLSI 
 
 
 
END of the results output 
