 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0055.inter 
CONANA-PAIR            ../CONANA/T0055.pair 
# 
NUMBER-OF-PARENTS      4 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0055.1esl.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0055.1lit.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0055.1rtm_1.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0055.1htn.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 966 atoms, MODEL 983 atoms, 966 common with TARGET 
           Number of atoms possible to evaluate: 966 
 
 
 CA-RMS TARGET<->PARENT(1esl)	 2.181936 
 
 CA-RMS TARGET<->PARENT(1lit)	 3.321523 
 
 CA-RMS TARGET<->PARENT(1rtm-1)	 2.161827 
 
 CA-RMS TARGET<->PARENT(1htn)	 1.879763 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    63.45           64.3   244   100.0   244     ARMSMC  
     WELL ORDERED  . . . . .    63.37           64.3   235   100.0   235     ARMSMC  
     NO INTER CONTACTS . . .    62.23           62.8   164   100.0   164     ARMSMC  
     SHIFTED CHAIN . . . . .    73.40           56.0   150   100.0   150     ARMSMC  
     ALTERNATIVE PARENT  . .    86.13           45.7    46   100.0    46     ARMSMC  
     SECONDARY STRUCTURE . .    31.00           87.7   114   100.0   114     ARMSMC  
     LARGE SHIFTS/INSERTIONS    89.34           44.9    78   100.0    78     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    72.37           57.2   138   100.0   138     ARMSMC  
     BURIED  . . . . . . . .    49.46           73.6   106   100.0   106     ARMSMC  
     CORE  . . . . . . . . .    46.54           73.5   166   100.0   166     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    81.15           52.4   105   100.0   105     ARMSSC1 
     WELL ORDERED  . . . . .    80.35           53.0   100   100.0   100     ARMSSC1 
     NO INTER CONTACTS . . .    85.88           50.7    67   100.0    67     ARMSSC1 
     RELIABLE SIDE CHAINS  .    80.66           52.6    97   100.0    97     ARMSSC1 
     CHANGED ANGLES  . . . .    84.93           49.2    59   100.0    59     ARMSSC1 
     SHIFTED CHAIN . . . . .    80.03           50.7    67   100.0    67     ARMSSC1 
     ALTERNATIVE PARENT  . .    71.00           60.0    20   100.0    20     ARMSSC1 
     SECONDARY STRUCTURE . .    82.33           50.0    50   100.0    50     ARMSSC1 
     LARGE SHIFTS/INSERTIONS    77.37           51.4    35   100.0    35     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .    83.66           49.1    57   100.0    57     ARMSSC1 
     BURIED  . . . . . . . .    78.07           56.2    48   100.0    48     ARMSSC1 
     CORE  . . . . . . . . .    82.98           52.9    70   100.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    70.06           54.5    77   100.0    77     ARMSSC2 
     WELL ORDERED  . . . . .    70.78           54.8    73   100.0    73     ARMSSC2 
     NO INTER CONTACTS . . .    64.59           60.0    45   100.0    45     ARMSSC2 
     RELIABLE SIDE CHAINS  .    59.55           56.9    58   100.0    58     ARMSSC2 
     CHANGED ANGLES  . . . .    76.64           50.9    53   100.0    53     ARMSSC2 
     SHIFTED CHAIN . . . . .    69.70           56.9    51   100.0    51     ARMSSC2 
     ALTERNATIVE PARENT  . .    53.14           64.7    17   100.0    17     ARMSSC2 
     SECONDARY STRUCTURE . .    66.68           54.3    35   100.0    35     ARMSSC2 
     LARGE SHIFTS/INSERTIONS    69.77           52.0    25   100.0    25     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .    68.57           55.8    43   100.0    43     ARMSSC2 
     BURIED  . . . . . . . .    71.90           52.9    34   100.0    34     ARMSSC2 
     CORE  . . . . . . . . .    70.19           55.8    52   100.0    52     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    93.21           30.4    23   100.0    23     ARMSSC3 
     WELL ORDERED  . . . . .    97.51           30.0    20   100.0    20     ARMSSC3 
     NO INTER CONTACTS . . .    85.98           27.3    11   100.0    11     ARMSSC3 
     RELIABLE SIDE CHAINS  .    83.73           38.9    18   100.0    18     ARMSSC3 
     CHANGED ANGLES  . . . .    97.80           26.3    19   100.0    19     ARMSSC3 
     SHIFTED CHAIN . . . . .   102.58           26.7    15   100.0    15     ARMSSC3 
     ALTERNATIVE PARENT  . .   107.11           20.0     5   100.0     5     ARMSSC3 
     SECONDARY STRUCTURE . .    82.97           42.9    14   100.0    14     ARMSSC3 
     LARGE SHIFTS/INSERTIONS   120.18            0.0     8   100.0     8     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .    83.68           35.7    14   100.0    14     ARMSSC3 
     BURIED  . . . . . . . .   106.35           22.2     9   100.0     9     ARMSSC3 
     CORE  . . . . . . . . .    74.95           46.7    15   100.0    15     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .   103.52           37.5     8   100.0     8     ARMSSC4 
     WELL ORDERED  . . . . .   108.14           42.9     7   100.0     7     ARMSSC4 
     NO INTER CONTACTS . . .   113.86           25.0     4   100.0     4     ARMSSC4 
     RELIABLE SIDE CHAINS  .   103.52           37.5     8   100.0     8     ARMSSC4 
     CHANGED ANGLES  . . . .    95.32           42.9     7   100.0     7     ARMSSC4 
     SHIFTED CHAIN . . . . .    76.53           75.0     4   100.0     4     ARMSSC4 
     ALTERNATIVE PARENT  . .     7.26          100.0     2   100.0     2     ARMSSC4 
     SECONDARY STRUCTURE . .   127.82           20.0     5   100.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS    62.73           66.7     3   100.0     3     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .    80.56           50.0     6   100.0     6     ARMSSC4 
     BURIED  . . . . . . . .   152.95            0.0     2   100.0     2     ARMSSC4 
     CORE  . . . . . . . . .   121.59           20.0     5   100.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.36299     r(1,2) =  -0.82195     r(1,3) =  -0.43892 
 r(2,1) =   0.92920     r(2,2) =   0.35443     r(2,3) =   0.10472 
 r(3,1) =   0.06949     r(3,2) =  -0.44585     r(3,3) =   0.89241 
THE OFFSET VECTOR: 
 v(1) =  27.88476     v(2) =  10.67835     v(3) =   9.50198 
 
 Number of iteration 43                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.21           (Number of atoms:   73) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    3.97        123   100.0   123     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0322                            CRMSCA  
     WELL ORDERED  . . . . .    3.99        119   100.0   119     CRMSCA  
     NO INTER CONTACTS . . .    3.90         82   100.0    82     CRMSCA  
     SHIFTED CHAIN . . . . .    4.83         76   100.0    76     CRMSCA  
     ALTERNATIVE PARENT  . .    5.54         24   100.0    24     CRMSCA  
     SECONDARY STRUCTURE . .    3.31         57   100.0    57     CRMSCA  
     SHIFTED SS UNITS  . . .    5.82         10   100.0    10     CRMSCA  
     LARGE SHIFTS/INSERTIONS    5.71         40   100.0    40     CRMSCA  
     SURFACE . . . . . . . .    4.38         70   100.0    70     CRMSCA  
     BURIED  . . . . . . . .    3.34         53   100.0    53     CRMSCA  
     CORE  . . . . . . . . .    2.75         83   100.0    83     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    4.03        606   100.0   606     CRMSMC  
     WELL ORDERED  . . . . .    4.07        584   100.0   584     CRMSMC  
     NO INTER CONTACTS . . .    4.01        402   100.0   402     CRMSMC  
     SHIFTED CHAIN . . . . .    4.90        375   100.0   375     CRMSMC  
     ALTERNATIVE PARENT  . .    5.58        117   100.0   117     CRMSMC  
     SECONDARY STRUCTURE . .    3.39        283   100.0   283     CRMSMC  
     SHIFTED SS UNITS  . . .    5.90         50   100.0    50     CRMSMC  
     LARGE SHIFTS/INSERTIONS    5.78        197   100.0   197     CRMSMC  
     SURFACE . . . . . . . .    4.43        342   100.0   342     CRMSMC  
     BURIED  . . . . . . . .    3.46        264   100.0   264     CRMSMC  
     CORE  . . . . . . . . .    2.83        409   100.0   409     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    5.89        474   100.0   474     CRMSSC  
     WELL ORDERED  . . . . .    5.94        451   100.0   451     CRMSSC  
     NO INTER CONTACTS . . .    5.86        293   100.0   293     CRMSSC  
     RELIABLE SIDE CHAINS  .    5.81        408   100.0   408     CRMSSC  
     CHANGED ANGLES  . . . .    6.56        242   100.0   242     CRMSSC  
     SECONDARY STRUCTURE . .    4.17        235   100.0   235     CRMSSC  
     LARGE SHIFTS/INSERTIONS    7.81        158   100.0   158     CRMSSC  
     SURFACE . . . . . . . .    6.58        250   100.0   250     CRMSSC  
     BURIED  . . . . . . . .    5.01        224   100.0   224     CRMSSC  
     CORE  . . . . . . . . .    4.64        316   100.0   316     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    4.95        966   100.0   966     CRMSALL 
     WELL ORDERED  . . . . .    4.98        926   100.0   926     CRMSALL 
     NO INTER CONTACTS . . .    4.88        621   100.0   621     CRMSALL 
     SHIFTED CHAIN . . . . .    5.87        603   100.0   603     CRMSALL 
     ALTERNATIVE PARENT  . .    6.66        191   100.0   191     CRMSALL 
     SECONDARY STRUCTURE . .    3.76        463   100.0   463     CRMSALL 
     LARGE SHIFTS/INSERTIONS    6.74        318   100.0   318     CRMSALL 
     SURFACE . . . . . . . .    5.45        530   100.0   530     CRMSALL 
     BURIED  . . . . . . . .    4.27        436   100.0   436     CRMSALL 
     CORE  . . . . . . . . .    3.77        648   100.0   648     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     5.83      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     6.59      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3     6.11      6   100.0     6      60-LQDGAY-65   
 CA  LOOP  4     6.17      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     6.24      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     4.09      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     5.92     45   100.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     6.68     34   100.0    34      45-FTEVKGH-51   
 MC  LOOP  3     6.00     29   100.0    29      60-LQDGAY-65   
 MC  LOOP  4     6.18     25   100.0    25      76-PTDSD-80   
 MC  LOOP  5     6.55     20   100.0    20      90-PQSW-93   
 MC  LOOP  6     4.19     25   100.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     6.75     66   100.0    66      31-SAMRDSTMV-39   
 ALL LOOP  2     7.20     57   100.0    57      45-FTEVKGH-51   
 ALL LOOP  3     6.74     46   100.0    46      60-LQDGAY-65   
 ALL LOOP  4     6.72     36   100.0    36      76-PTDSD-80   
 ALL LOOP  5     7.68     36   100.0    36      90-PQSW-93   
 ALL LOOP  6     6.47     49   100.0    49     100-WSKYN-104  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     3.63      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     3.11      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3     2.57      6   100.0     6      60-LQDGAY-65   
 CA  LOOP  4     1.72      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     0.98      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     2.11      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     3.71     45   100.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     3.35     34   100.0    34      45-FTEVKGH-51   
 MC  LOOP  3     2.71     29   100.0    29      60-LQDGAY-65   
 MC  LOOP  4     2.14     25   100.0    25      76-PTDSD-80   
 MC  LOOP  5     2.08     20   100.0    20      90-PQSW-93   
 MC  LOOP  6     2.37     25   100.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     4.87     66   100.0    66      31-SAMRDSTMV-39   
 ALL LOOP  2     5.46     57   100.0    57      45-FTEVKGH-51   
 ALL LOOP  3     4.36     46   100.0    46      60-LQDGAY-65   
 ALL LOOP  4     3.18     36   100.0    36      76-PTDSD-80   
 ALL LOOP  5     5.03     36   100.0    36      90-PQSW-93   
 ALL LOOP  6     5.08     49   100.0    49     100-WSKYN-104  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.998      0.994       0.497    123   100.0   123     ERRCA  
     WELL ORDERED  . . . . .    3.030      0.994       0.497    119   100.0   119     ERRCA  
     NO INTER CONTACTS . . .    2.854      0.991       0.496     82   100.0    82     ERRCA  
     SHIFTED CHAIN . . . . .    4.086      0.998       0.499     76   100.0    76     ERRCA  
     ALTERNATIVE PARENT  . .    4.913      0.999       0.499     24   100.0    24     ERRCA  
     SECONDARY STRUCTURE . .    2.241      0.998       0.499     57   100.0    57     ERRCA  
     LARGE SHIFTS/INSERTIONS    5.309      0.998       0.499     40   100.0    40     ERRCA  
     SURFACE . . . . . . . .    3.488      0.994       0.497     70   100.0    70     ERRCA  
     BURIED  . . . . . . . .    2.350      0.994       0.497     53   100.0    53     ERRCA  
     CORE  . . . . . . . . .    1.884      0.992       0.496     83   100.0    83     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.062      0.995       0.497    606   100.0   606     ERRMC  
     WELL ORDERED  . . . . .    3.095      0.994       0.497    584   100.0   584     ERRMC  
     NO INTER CONTACTS . . .    2.951      0.993       0.496    402   100.0   402     ERRMC  
     SHIFTED CHAIN . . . . .    4.146      0.998       0.499    375   100.0   375     ERRMC  
     ALTERNATIVE PARENT  . .    4.949      0.999       0.499    117   100.0   117     ERRMC  
     SECONDARY STRUCTURE . .    2.305      0.998       0.499    283   100.0   283     ERRMC  
     LARGE SHIFTS/INSERTIONS    5.358      0.998       0.499    197   100.0   197     ERRMC  
     SURFACE . . . . . . . .    3.545      0.995       0.497    342   100.0   342     ERRMC  
     BURIED  . . . . . . . .    2.436      0.994       0.497    264   100.0   264     ERRMC  
     CORE  . . . . . . . . .    1.956      0.993       0.496    409   100.0   409     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.716      0.998       0.499    474   100.0   474     ERRSC  
     WELL ORDERED  . . . . .    4.767      0.997       0.499    451   100.0   451     ERRSC  
     NO INTER CONTACTS . . .    4.629      0.996       0.498    293   100.0   293     ERRSC  
     RELIABLE SIDE CHAINS  .    4.612      0.998       0.499    408   100.0   408     ERRSC  
     CHANGED ANGLES  . . . .    5.576      0.998       0.499    242   100.0   242     ERRSC  
     SHIFTED CHAIN . . . . .    5.953      0.999       0.500    299   100.0   299     ERRSC  
     ALTERNATIVE PARENT  . .    7.115      0.999       0.500     95   100.0    95     ERRSC  
     SECONDARY STRUCTURE . .    3.220      0.999       0.500    235   100.0   235     ERRSC  
     LARGE SHIFTS/INSERTIONS    7.263      0.998       0.499    158   100.0   158     ERRSC  
     SURFACE . . . . . . . .    5.607      0.997       0.499    250   100.0   250     ERRSC  
     BURIED  . . . . . . . .    3.722      0.998       0.499    224   100.0   224     ERRSC  
     CORE  . . . . . . . . .    3.443      0.997       0.499    316   100.0   316     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.795      0.996       0.498    966   100.0   966     ERRALL 
     WELL ORDERED  . . . . .    3.827      0.996       0.498    926   100.0   926     ERRALL 
     NO INTER CONTACTS . . .    3.662      0.994       0.497    621   100.0   621     ERRALL 
     SHIFTED CHAIN . . . . .    4.941      0.999       0.499    603   100.0   603     ERRALL 
     ALTERNATIVE PARENT  . .    5.890      0.999       0.499    191   100.0   191     ERRALL 
     SECONDARY STRUCTURE . .    2.724      0.999       0.499    463   100.0   463     ERRALL 
     LARGE SHIFTS/INSERTIONS    6.171      0.998       0.499    318   100.0   318     ERRALL 
     SURFACE . . . . . . . .    4.421      0.996       0.498    530   100.0   530     ERRALL 
     BURIED  . . . . . . . .    3.035      0.996       0.498    436   100.0   436     ERRALL 
     CORE  . . . . . . . . .    2.630      0.995       0.497    648   100.0   648     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        36        67        76        90       123     123     123   DISTCA 
CA  (P)     29.27     54.47     61.79     73.17    100.00             123   DISTCA 
CA  (RMS)    0.67      1.06      1.30      2.08      3.97                   DISTCA 
 
ALL (N)       204       417       509       654       922     966     966   DISTALL 
ALL (P)     21.12     43.17     52.69     67.70     95.45             966   DISTALL 
ALL (RMS)    0.69      1.14      1.47      2.32      4.39                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)          83            83            40          RMSLSI 
CA  (P)       67.48         67.48         32.52          RMSLSI 
CA  (RMS)      1.17          2.75          5.71          RMSLSI 
 
 
 
END of the results output 
