 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0055.inter 
CONANA-PAIR            ../CONANA/T0055.pair 
# 
NUMBER-OF-PARENTS      4 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0055.1esl.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0055.1lit.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0055.1rtm_1.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0055.1htn.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 966 atoms, MODEL 982 atoms, 966 common with TARGET 
           Number of atoms possible to evaluate: 958 
 
 
 CA-RMS TARGET<->PARENT(1esl)	 2.181936 
 
 CA-RMS TARGET<->PARENT(1lit)	 3.321523 
 
 CA-RMS TARGET<->PARENT(1rtm-1)	 2.161827 
 
 CA-RMS TARGET<->PARENT(1htn)	 1.879763 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    62.71           59.1   242    99.2   244     ARMSMC  
     WELL ORDERED  . . . . .    62.29           60.1   233    99.1   235     ARMSMC  
     NO INTER CONTACTS . . .    61.57           58.5   164   100.0   164     ARMSMC  
     SHIFTED CHAIN . . . . .    74.50           48.0   148    98.7   150     ARMSMC  
     ALTERNATIVE PARENT  . .    88.50           35.6    45    97.8    46     ARMSMC  
     SECONDARY STRUCTURE . .    44.56           69.0   113    99.1   114     ARMSMC  
     LARGE SHIFTS/INSERTIONS    89.89           44.2    77    98.7    78     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    72.76           53.3   137    99.3   138     ARMSMC  
     BURIED  . . . . . . . .    46.43           66.7   105    99.1   106     ARMSMC  
     CORE  . . . . . . . . .    44.68           66.1   165    99.4   166     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    73.08           59.6   104    99.0   105     ARMSSC1 
     WELL ORDERED  . . . . .    73.52           58.6    99    99.0   100     ARMSSC1 
     NO INTER CONTACTS . . .    73.88           56.7    67   100.0    67     ARMSSC1 
     RELIABLE SIDE CHAINS  .    72.10           60.4    96    99.0    97     ARMSSC1 
     CHANGED ANGLES  . . . .    93.38           36.2    58    98.3    59     ARMSSC1 
     SHIFTED CHAIN . . . . .    80.69           48.5    66    98.5    67     ARMSSC1 
     ALTERNATIVE PARENT  . .    77.17           47.4    19    95.0    20     ARMSSC1 
     SECONDARY STRUCTURE . .    73.38           64.0    50   100.0    50     ARMSSC1 
     LARGE SHIFTS/INSERTIONS    80.13           47.1    34    97.1    35     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .    72.64           62.5    56    98.2    57     ARMSSC1 
     BURIED  . . . . . . . .    73.58           56.2    48   100.0    48     ARMSSC1 
     CORE  . . . . . . . . .    69.39           65.7    70   100.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    66.90           50.0    76    98.7    77     ARMSSC2 
     WELL ORDERED  . . . . .    66.54           50.0    72    98.6    73     ARMSSC2 
     NO INTER CONTACTS . . .    69.09           46.7    45   100.0    45     ARMSSC2 
     RELIABLE SIDE CHAINS  .    57.87           57.9    57    98.3    58     ARMSSC2 
     CHANGED ANGLES  . . . .    76.35           36.5    52    98.1    53     ARMSSC2 
     SHIFTED CHAIN . . . . .    67.50           44.0    50    98.0    51     ARMSSC2 
     ALTERNATIVE PARENT  . .    57.58           50.0    16    94.1    17     ARMSSC2 
     SECONDARY STRUCTURE . .    56.54           68.6    35   100.0    35     ARMSSC2 
     LARGE SHIFTS/INSERTIONS    68.90           41.7    24    96.0    25     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .    69.57           45.2    42    97.7    43     ARMSSC2 
     BURIED  . . . . . . . .    63.44           55.9    34   100.0    34     ARMSSC2 
     CORE  . . . . . . . . .    65.96           53.8    52   100.0    52     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    84.60           34.8    23   100.0    23     ARMSSC3 
     WELL ORDERED  . . . . .    89.36           35.0    20   100.0    20     ARMSSC3 
     NO INTER CONTACTS . . .    74.33           27.3    11   100.0    11     ARMSSC3 
     RELIABLE SIDE CHAINS  .    78.64           33.3    18   100.0    18     ARMSSC3 
     CHANGED ANGLES  . . . .    92.84           21.1    19   100.0    19     ARMSSC3 
     SHIFTED CHAIN . . . . .    97.02           20.0    15   100.0    15     ARMSSC3 
     ALTERNATIVE PARENT  . .    85.83           20.0     5   100.0     5     ARMSSC3 
     SECONDARY STRUCTURE . .    76.81           28.6    14   100.0    14     ARMSSC3 
     LARGE SHIFTS/INSERTIONS   124.74           12.5     8   100.0     8     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .    95.42           21.4    14   100.0    14     ARMSSC3 
     BURIED  . . . . . . . .    64.26           55.6     9   100.0     9     ARMSSC3 
     CORE  . . . . . . . . .    51.74           46.7    15   100.0    15     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    98.65           25.0     8   100.0     8     ARMSSC4 
     WELL ORDERED  . . . . .    87.66           28.6     7   100.0     7     ARMSSC4 
     NO INTER CONTACTS . . .    89.52            0.0     4   100.0     4     ARMSSC4 
     RELIABLE SIDE CHAINS  .    98.65           25.0     8   100.0     8     ARMSSC4 
     CHANGED ANGLES  . . . .    82.47           28.6     7   100.0     7     ARMSSC4 
     SHIFTED CHAIN . . . . .    74.79           25.0     4   100.0     4     ARMSSC4 
     ALTERNATIVE PARENT  . .    88.06           50.0     2   100.0     2     ARMSSC4 
     SECONDARY STRUCTURE . .    98.74           20.0     5   100.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS    41.18           66.7     3   100.0     3     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .    88.01           33.3     6   100.0     6     ARMSSC4 
     BURIED  . . . . . . . .   125.24            0.0     2   100.0     2     ARMSSC4 
     CORE  . . . . . . . . .   120.63            0.0     5   100.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.73526     r(1,2) =   0.32181     r(1,3) =  -0.59652 
 r(2,1) =  -0.09583     r(2,2) =  -0.82189     r(2,3) =  -0.56152 
 r(3,1) =  -0.67098     r(3,2) =   0.47003     r(3,3) =  -0.57346 
THE OFFSET VECTOR: 
 v(1) = -11.67198     v(2) = 130.54770     v(3) =  30.63883 
 
 Number of iteration 35                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.15           (Number of atoms:   73) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    4.27        122    99.2   123     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0350                            CRMSCA  
     WELL ORDERED  . . . . .    4.28        118    99.2   119     CRMSCA  
     NO INTER CONTACTS . . .    4.01         82   100.0    82     CRMSCA  
     SHIFTED CHAIN . . . . .    5.32         75    98.7    76     CRMSCA  
     ALTERNATIVE PARENT  . .    5.89         23    95.8    24     CRMSCA  
     SECONDARY STRUCTURE . .    4.14         57   100.0    57     CRMSCA  
     SHIFTED SS UNITS  . . .    6.91         10   100.0    10     CRMSCA  
     LARGE SHIFTS/INSERTIONS    6.44         39    97.5    40     CRMSCA  
     SURFACE . . . . . . . .    4.96         69    98.6    70     CRMSCA  
     BURIED  . . . . . . . .    3.16         53   100.0    53     CRMSCA  
     CORE  . . . . . . . . .    2.71         83   100.0    83     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    4.31        601    99.2   606     CRMSMC  
     WELL ORDERED  . . . . .    4.33        579    99.1   584     CRMSMC  
     NO INTER CONTACTS . . .    4.10        402   100.0   402     CRMSMC  
     SHIFTED CHAIN . . . . .    5.36        370    98.7   375     CRMSMC  
     ALTERNATIVE PARENT  . .    5.93        112    95.7   117     CRMSMC  
     SECONDARY STRUCTURE . .    4.15        283   100.0   283     CRMSMC  
     SHIFTED SS UNITS  . . .    6.89         50   100.0    50     CRMSMC  
     LARGE SHIFTS/INSERTIONS    6.48        192    97.5   197     CRMSMC  
     SURFACE . . . . . . . .    5.02        337    98.5   342     CRMSMC  
     BURIED  . . . . . . . .    3.20        264   100.0   264     CRMSMC  
     CORE  . . . . . . . . .    2.76        409   100.0   409     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    6.26        470    99.2   474     CRMSSC  
     WELL ORDERED  . . . . .    6.31        447    99.1   451     CRMSSC  
     NO INTER CONTACTS . . .    6.12        293   100.0   293     CRMSSC  
     RELIABLE SIDE CHAINS  .    6.24        404    99.0   408     CRMSSC  
     CHANGED ANGLES  . . . .    7.42        239    98.8   242     CRMSSC  
     SECONDARY STRUCTURE . .    5.51        235   100.0   235     CRMSSC  
     LARGE SHIFTS/INSERTIONS    9.55        154    97.5   158     CRMSSC  
     SURFACE . . . . . . . .    7.51        246    98.4   250     CRMSSC  
     BURIED  . . . . . . . .    4.49        224   100.0   224     CRMSSC  
     CORE  . . . . . . . . .    3.71        316   100.0   316     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    5.28        958    99.2   966     CRMSALL 
     WELL ORDERED  . . . . .    5.31        918    99.1   926     CRMSALL 
     NO INTER CONTACTS . . .    5.09        621   100.0   621     CRMSALL 
     SHIFTED CHAIN . . . . .    6.48        595    98.7   603     CRMSALL 
     ALTERNATIVE PARENT  . .    7.44        183    95.8   191     CRMSALL 
     SECONDARY STRUCTURE . .    4.82        463   100.0   463     CRMSALL 
     LARGE SHIFTS/INSERTIONS    8.03        310    97.5   318     CRMSALL 
     SURFACE . . . . . . . .    6.23        522    98.5   530     CRMSALL 
     BURIED  . . . . . . . .    3.86        436   100.0   436     CRMSALL 
     CORE  . . . . . . . . .    3.23        648   100.0   648     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     6.70      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     8.66      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3     6.86      6   100.0     6      60-LQDGAY-65   
 CA  LOOP  4     5.70      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     4.78      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     3.91      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     6.74     45   100.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     8.77     34   100.0    34      45-FTEVKGH-51   
 MC  LOOP  3     6.76     29   100.0    29      60-LQDGAY-65   
 MC  LOOP  4     5.78     25   100.0    25      76-PTDSD-80   
 MC  LOOP  5     5.02     20   100.0    20      90-PQSW-93   
 MC  LOOP  6     3.94     25   100.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     8.23     66   100.0    66      31-SAMRDSTMV-39   
 ALL LOOP  2    10.54     57   100.0    57      45-FTEVKGH-51   
 ALL LOOP  3     8.69     46   100.0    46      60-LQDGAY-65   
 ALL LOOP  4     6.32     36   100.0    36      76-PTDSD-80   
 ALL LOOP  5     7.46     36   100.0    36      90-PQSW-93   
 ALL LOOP  6     5.37     49   100.0    49     100-WSKYN-104  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     3.68      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     3.01      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3     1.25      6   100.0     6      60-LQDGAY-65   
 CA  LOOP  4     2.45      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     1.96      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     1.43      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     3.80     45   100.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     3.23     34   100.0    34      45-FTEVKGH-51   
 MC  LOOP  3     1.84     29   100.0    29      60-LQDGAY-65   
 MC  LOOP  4     2.74     25   100.0    25      76-PTDSD-80   
 MC  LOOP  5     2.81     20   100.0    20      90-PQSW-93   
 MC  LOOP  6     1.82     25   100.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     5.24     66   100.0    66      31-SAMRDSTMV-39   
 ALL LOOP  2     5.53     57   100.0    57      45-FTEVKGH-51   
 ALL LOOP  3     3.98     46   100.0    46      60-LQDGAY-65   
 ALL LOOP  4     3.62     36   100.0    36      76-PTDSD-80   
 ALL LOOP  5     5.78     36   100.0    36      90-PQSW-93   
 ALL LOOP  6     3.25     49   100.0    49     100-WSKYN-104  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.988      0.564       0.583    122    99.2   123     ERRCA  
     WELL ORDERED  . . . . .    5.975      0.562       0.582    118    99.2   119     ERRCA  
     NO INTER CONTACTS . . .    6.259      0.602       0.615     82   100.0    82     ERRCA  
     SHIFTED CHAIN . . . . .    4.689      0.400       0.423     75    98.7    76     ERRCA  
     ALTERNATIVE PARENT  . .    3.997      0.315       0.354     23    95.8    24     ERRCA  
     SECONDARY STRUCTURE . .    6.583      0.643       0.650     57   100.0    57     ERRCA  
     LARGE SHIFTS/INSERTIONS    3.438      0.258       0.273     39    97.5    40     ERRCA  
     SURFACE . . . . . . . .    5.332      0.484       0.507     69    98.6    70     ERRCA  
     BURIED  . . . . . . . .    6.840      0.669       0.682     53   100.0    53     ERRCA  
     CORE  . . . . . . . . .    7.186      0.708       0.729     83   100.0    83     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.951      0.558       0.577    601    99.2   606     ERRMC  
     WELL ORDERED  . . . . .    5.943      0.557       0.576    579    99.1   584     ERRMC  
     NO INTER CONTACTS . . .    6.195      0.592       0.607    402   100.0   402     ERRMC  
     SHIFTED CHAIN . . . . .    4.682      0.399       0.421    370    98.7   375     ERRMC  
     ALTERNATIVE PARENT  . .    4.044      0.318       0.351    112    95.7   117     ERRMC  
     SECONDARY STRUCTURE . .    6.558      0.637       0.646    283   100.0   283     ERRMC  
     LARGE SHIFTS/INSERTIONS    3.411      0.254       0.271    192    97.5   197     ERRMC  
     SURFACE . . . . . . . .    5.301      0.478       0.499    337    98.5   342     ERRMC  
     BURIED  . . . . . . . .    6.782      0.660       0.676    264   100.0   264     ERRMC  
     CORE  . . . . . . . . .    7.144      0.700       0.721    409   100.0   409     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.333      0.472       0.486    470    99.2   474     ERRSC  
     WELL ORDERED  . . . . .    5.317      0.470       0.483    447    99.1   451     ERRSC  
     NO INTER CONTACTS . . .    5.684      0.510       0.525    293   100.0   293     ERRSC  
     RELIABLE SIDE CHAINS  .    5.441      0.484       0.496    404    99.0   408     ERRSC  
     CHANGED ANGLES  . . . .    4.532      0.362       0.377    239    98.8   242     ERRSC  
     SHIFTED CHAIN . . . . .    4.036      0.317       0.322    295    98.7   299     ERRSC  
     ALTERNATIVE PARENT  . .    3.074      0.202       0.193     91    95.8    95     ERRSC  
     SECONDARY STRUCTURE . .    6.086      0.554       0.575    235   100.0   235     ERRSC  
     LARGE SHIFTS/INSERTIONS    2.924      0.173       0.151    154    97.5   158     ERRSC  
     SURFACE . . . . . . . .    4.285      0.344       0.351    246    98.4   250     ERRSC  
     BURIED  . . . . . . . .    6.484      0.612       0.634    224   100.0   224     ERRSC  
     CORE  . . . . . . . . .    6.507      0.617       0.649    316   100.0   316     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.688      0.520       0.537    958    99.2   966     ERRALL 
     WELL ORDERED  . . . . .    5.681      0.519       0.536    918    99.1   926     ERRALL 
     NO INTER CONTACTS . . .    5.992      0.557       0.572    621   100.0   621     ERRALL 
     SHIFTED CHAIN . . . . .    4.416      0.363       0.378    595    98.7   603     ERRALL 
     ALTERNATIVE PARENT  . .    3.626      0.267       0.281    183    95.8   191     ERRALL 
     SECONDARY STRUCTURE . .    6.340      0.598       0.613    463   100.0   463     ERRALL 
     LARGE SHIFTS/INSERTIONS    3.261      0.223       0.221    310    97.5   318     ERRALL 
     SURFACE . . . . . . . .    4.872      0.420       0.436    522    98.5   530     ERRALL 
     BURIED  . . . . . . . .    6.664      0.638       0.658    436   100.0   436     ERRALL 
     CORE  . . . . . . . . .    6.848      0.662       0.688    648   100.0   648     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)        36        71        76        87       120     122     123   DISTCA 
CA  (P)     29.27     57.72     61.79     70.73     97.56             123   DISTCA 
CA  (RMS)    0.66      1.10      1.26      1.89      3.99                   DISTCA 
 
ALL (N)       231       466       540       639       889     958     966   DISTALL 
ALL (P)     23.91     48.24     55.90     66.15     92.03             966   DISTALL 
ALL (RMS)    0.67      1.11      1.38      2.04      4.19                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)          83            83            39          RMSLSI 
CA  (P)       67.48         67.48         31.71          RMSLSI 
CA  (RMS)      1.17          2.71          6.44          RMSLSI 
 
 
 
END of the results output 
