 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0055.inter 
CONANA-PAIR            ../CONANA/T0055.pair 
# 
NUMBER-OF-PARENTS      4 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0055.1esl.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0055.1lit.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0055.1rtm_1.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0055.1htn.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 966 atoms, MODEL 545 atoms, 533 common with TARGET 
           Number of atoms possible to evaluate: 460 
 
 
 CA-RMS TARGET<->PARENT(1esl)	 2.181936 
 
 CA-RMS TARGET<->PARENT(1lit)	 3.321523 
 
 CA-RMS TARGET<->PARENT(1rtm-1)	 2.161827 
 
 CA-RMS TARGET<->PARENT(1htn)	 1.879763 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    80.56           47.3   224    91.8   244     ARMSMC  
     WELL ORDERED  . . . . .    80.46           47.9   217    92.3   235     ARMSMC  
     NO INTER CONTACTS . . .    85.15           41.8   153    93.3   164     ARMSMC  
     SHIFTED CHAIN . . . . .    79.27           46.0   139    92.7   150     ARMSMC  
     ALTERNATIVE PARENT  . .    65.18           52.3    44    95.7    46     ARMSMC  
     SECONDARY STRUCTURE . .    72.82           57.8   109    95.6   114     ARMSMC  
     LARGE SHIFTS/INSERTIONS    78.04           50.0    76    97.4    78     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    83.95           45.3   128    92.8   138     ARMSMC  
     BURIED  . . . . . . . .    75.79           50.0    96    90.6   106     ARMSMC  
     CORE  . . . . . . . . .    81.82           45.9   148    89.2   166     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   105     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   100     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    67     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    97     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    59     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    67     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    20     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    50     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    35     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    77     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    73     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    45     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    58     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    53     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    51     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    17     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    25     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    34     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    20     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    18     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    15     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     5     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    14     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     8     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    15     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     8     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     2     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     3     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =  -0.15504     r(1,2) =   0.69686     r(1,3) =   0.70025 
 r(2,1) =  -0.87417     r(2,2) =  -0.42697     r(2,3) =   0.23136 
 r(3,1) =   0.46021     r(3,2) =  -0.57627     r(3,3) =   0.67536 
THE OFFSET VECTOR: 
 v(1) =  -0.42326     v(2) =  17.95383     v(3) =  -0.94321 
 
 Number of iteration 31                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.75           (Number of atoms:   11) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   16.89        115    93.5   123     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1469                            CRMSCA  
     WELL ORDERED  . . . . .   17.10        112    94.1   119     CRMSCA  
     NO INTER CONTACTS . . .   15.62         78    95.1    82     CRMSCA  
     SHIFTED CHAIN . . . . .   18.09         72    94.7    76     CRMSCA  
     ALTERNATIVE PARENT  . .   18.49         23    95.8    24     CRMSCA  
     SECONDARY STRUCTURE . .   16.99         55    96.5    57     CRMSCA  
     SHIFTED SS UNITS  . . .   22.25         10   100.0    10     CRMSCA  
     LARGE SHIFTS/INSERTIONS   18.73         39    97.5    40     CRMSCA  
     SURFACE . . . . . . . .   18.59         66    94.3    70     CRMSCA  
     BURIED  . . . . . . . .   14.29         49    92.5    53     CRMSCA  
     CORE  . . . . . . . . .   15.86         76    91.6    83     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   16.87        460    75.9   606     CRMSMC  
     WELL ORDERED  . . . . .   17.04        447    76.5   584     CRMSMC  
     NO INTER CONTACTS . . .   15.61        312    77.6   402     CRMSMC  
     SHIFTED CHAIN . . . . .   18.12        288    76.8   375     CRMSMC  
     ALTERNATIVE PARENT  . .   18.47         92    78.6   117     CRMSMC  
     SECONDARY STRUCTURE . .   17.05        220    77.7   283     CRMSMC  
     SHIFTED SS UNITS  . . .   22.31         40    80.0    50     CRMSMC  
     LARGE SHIFTS/INSERTIONS   18.77        156    79.2   197     CRMSMC  
     SURFACE . . . . . . . .   18.47        264    77.2   342     CRMSMC  
     BURIED  . . . . . . . .   14.43        196    74.2   264     CRMSMC  
     CORE  . . . . . . . . .   15.81        304    74.3   409     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   474     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   451     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   293     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   408     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   242     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   235     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   158     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   250     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   224     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   316     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   16.87        460    47.6   966     CRMSALL 
     WELL ORDERED  . . . . .   17.04        447    48.3   926     CRMSALL 
     NO INTER CONTACTS . . .   15.61        312    50.2   621     CRMSALL 
     SHIFTED CHAIN . . . . .   18.12        288    47.8   603     CRMSALL 
     ALTERNATIVE PARENT  . .   18.47         92    48.2   191     CRMSALL 
     SECONDARY STRUCTURE . .   17.05        220    47.5   463     CRMSALL 
     LARGE SHIFTS/INSERTIONS   18.77        156    49.1   318     CRMSALL 
     SURFACE . . . . . . . .   18.47        264    49.8   530     CRMSALL 
     BURIED  . . . . . . . .   14.43        196    45.0   436     CRMSALL 
     CORE  . . . . . . . . .   15.81        304    46.9   648     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1    18.36      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2    24.89      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3    16.96      6   100.0     6      60-LQDGAY-65   
 CA  LOOP  4     6.54      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5    28.54      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     5.61      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1    18.64     36    80.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2    25.08     28    82.4    34      45-FTEVKGH-51   
 MC  LOOP  3    17.01     24    82.8    29      60-LQDGAY-65   
 MC  LOOP  4     6.63     20    80.0    25      76-PTDSD-80   
 MC  LOOP  5    28.27     16    80.0    20      90-PQSW-93   
 MC  LOOP  6     5.59     20    80.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1    18.64     36    54.5    66      31-SAMRDSTMV-39   
 ALL LOOP  2    25.08     28    49.1    57      45-FTEVKGH-51   
 ALL LOOP  3    17.01     24    52.2    46      60-LQDGAY-65   
 ALL LOOP  4     6.63     20    55.6    36      76-PTDSD-80   
 ALL LOOP  5    28.27     16    44.4    36      90-PQSW-93   
 ALL LOOP  6     5.59     20    40.8    49     100-WSKYN-104  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     2.57      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     2.22      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3     3.01      6   100.0     6      60-LQDGAY-65   
 CA  LOOP  4     2.53      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     1.68      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     0.76      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     2.42     36    80.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     2.39     28    82.4    34      45-FTEVKGH-51   
 MC  LOOP  3     2.99     24    82.8    29      60-LQDGAY-65   
 MC  LOOP  4     2.25     20    80.0    25      76-PTDSD-80   
 MC  LOOP  5     1.88     16    80.0    20      90-PQSW-93   
 MC  LOOP  6     1.55     20    80.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     2.42     36    54.5    66      31-SAMRDSTMV-39   
 ALL LOOP  2     2.39     28    49.1    57      45-FTEVKGH-51   
 ALL LOOP  3     2.99     24    52.2    46      60-LQDGAY-65   
 ALL LOOP  4     2.25     20    55.6    36      76-PTDSD-80   
 ALL LOOP  5     1.88     16    44.4    36      90-PQSW-93   
 ALL LOOP  6     1.55     20    40.8    49     100-WSKYN-104  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.500      1.000       0.500    115    93.5   123     ERRCA  
     WELL ORDERED  . . . . .   14.801      1.000       0.500    112    94.1   119     ERRCA  
     NO INTER CONTACTS . . .   13.281      1.000       0.500     78    95.1    82     ERRCA  
     SHIFTED CHAIN . . . . .   15.760      1.000       0.500     72    94.7    76     ERRCA  
     ALTERNATIVE PARENT  . .   16.406      1.000       0.500     23    95.8    24     ERRCA  
     SECONDARY STRUCTURE . .   14.997      1.000       0.500     55    96.5    57     ERRCA  
     LARGE SHIFTS/INSERTIONS   16.564      1.000       0.500     39    97.5    40     ERRCA  
     SURFACE . . . . . . . .   16.070      1.000       0.500     66    94.3    70     ERRCA  
     BURIED  . . . . . . . .   12.384      1.000       0.500     49    92.5    53     ERRCA  
     CORE  . . . . . . . . .   13.440      1.000       0.500     76    91.6    83     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.467      1.000       0.500    460    75.9   606     ERRMC  
     WELL ORDERED  . . . . .   14.730      1.000       0.500    447    76.5   584     ERRMC  
     NO INTER CONTACTS . . .   13.228      1.000       0.500    312    77.6   402     ERRMC  
     SHIFTED CHAIN . . . . .   15.817      1.000       0.500    288    76.8   375     ERRMC  
     ALTERNATIVE PARENT  . .   16.413      1.000       0.500     92    78.6   117     ERRMC  
     SECONDARY STRUCTURE . .   15.018      1.000       0.500    220    77.7   283     ERRMC  
     LARGE SHIFTS/INSERTIONS   16.672      1.000       0.500    156    79.2   197     ERRMC  
     SURFACE . . . . . . . .   15.955      1.000       0.500    264    77.2   342     ERRMC  
     BURIED  . . . . . . . .   12.462      1.000       0.500    196    74.2   264     ERRMC  
     CORE  . . . . . . . . .   13.335      1.000       0.500    304    74.3   409     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   474     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   451     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   293     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   408     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   242     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   299     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0    95     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   235     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   158     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   250     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   224     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   316     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.467      1.000       0.500    460    47.6   966     ERRALL 
     WELL ORDERED  . . . . .   14.730      1.000       0.500    447    48.3   926     ERRALL 
     NO INTER CONTACTS . . .   13.228      1.000       0.500    312    50.2   621     ERRALL 
     SHIFTED CHAIN . . . . .   15.817      1.000       0.500    288    47.8   603     ERRALL 
     ALTERNATIVE PARENT  . .   16.413      1.000       0.500     92    48.2   191     ERRALL 
     SECONDARY STRUCTURE . .   15.018      1.000       0.500    220    47.5   463     ERRALL 
     LARGE SHIFTS/INSERTIONS   16.672      1.000       0.500    156    49.1   318     ERRALL 
     SURFACE . . . . . . . .   15.955      1.000       0.500    264    49.8   530     ERRALL 
     BURIED  . . . . . . . .   12.462      1.000       0.500    196    45.0   436     ERRALL 
     CORE  . . . . . . . . .   13.335      1.000       0.500    304    46.9   648     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         1         8        11        18        43     115     123   DISTCA 
CA  (P)      0.81      6.50      8.94     14.63     34.96             123   DISTCA 
CA  (RMS)    0.95      1.39      1.75      2.82      5.68                   DISTCA 
 
ALL (N)        12        26        45        81       177     460     966   DISTALL 
ALL (P)      1.24      2.69      4.66      8.39     18.32             966   DISTALL 
ALL (RMS)    0.87      1.22      1.94      3.00      5.72                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)          83            76            39          RMSLSI 
CA  (P)       67.48         61.79         31.71          RMSLSI 
CA  (RMS)      1.17         15.86         18.73          RMSLSI 
 
 
 
END of the results output 
