 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0055.inter 
CONANA-PAIR            ../CONANA/T0055.pair 
# 
NUMBER-OF-PARENTS      4 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0055.1esl.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0055.1lit.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0055.1rtm_1.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0055.1htn.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 966 atoms, MODEL 569 atoms, 557 common with TARGET 
           Number of atoms possible to evaluate: 432 
 
 
 CA-RMS TARGET<->PARENT(1esl)	 2.181936 
 
 CA-RMS TARGET<->PARENT(1lit)	 3.321523 
 
 CA-RMS TARGET<->PARENT(1rtm-1)	 2.161827 
 
 CA-RMS TARGET<->PARENT(1htn)	 1.879763 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    83.92           47.6   208    85.2   244     ARMSMC  
     WELL ORDERED  . . . . .    82.70           48.3   201    85.5   235     ARMSMC  
     NO INTER CONTACTS . . .    76.57           53.9   141    86.0   164     ARMSMC  
     SHIFTED CHAIN . . . . .    88.76           42.4   125    83.3   150     ARMSMC  
     ALTERNATIVE PARENT  . .    90.45           35.1    37    80.4    46     ARMSMC  
     SECONDARY STRUCTURE . .    76.60           53.3   107    93.9   114     ARMSMC  
     LARGE SHIFTS/INSERTIONS    87.59           42.0    69    88.5    78     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    86.04           46.0   113    81.9   138     ARMSMC  
     BURIED  . . . . . . . .    81.32           49.5    95    89.6   106     ARMSMC  
     CORE  . . . . . . . . .    82.03           50.4   139    83.7   166     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   105     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   100     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    67     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    97     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    59     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    67     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    20     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    50     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    35     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    77     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    73     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    45     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    58     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    53     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    51     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    17     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    25     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    34     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    20     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    18     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    15     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     5     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    14     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     8     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    15     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     8     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     2     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     3     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.53939     r(1,2) =  -0.59527     r(1,3) =  -0.59558 
 r(2,1) =  -0.70654     r(2,2) =  -0.70473     r(2,3) =   0.06447 
 r(3,1) =  -0.45810     r(3,2) =   0.38602     r(3,3) =  -0.80071 
THE OFFSET VECTOR: 
 v(1) =  71.23394     v(2) =  11.95150     v(3) =  74.76196 
 
 Number of iteration 29                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.62           (Number of atoms:   10) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   15.65        108    87.8   123     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1449                            CRMSCA  
     WELL ORDERED  . . . . .   15.45        105    88.2   119     CRMSCA  
     NO INTER CONTACTS . . .   15.31         73    89.0    82     CRMSCA  
     SHIFTED CHAIN . . . . .   15.59         66    86.8    76     CRMSCA  
     ALTERNATIVE PARENT  . .   19.08         20    83.3    24     CRMSCA  
     SECONDARY STRUCTURE . .   14.99         54    94.7    57     CRMSCA  
     SHIFTED SS UNITS  . . .    3.88         10   100.0    10     CRMSCA  
     LARGE SHIFTS/INSERTIONS   14.89         36    90.0    40     CRMSCA  
     SURFACE . . . . . . . .   16.81         59    84.3    70     CRMSCA  
     BURIED  . . . . . . . .   14.14         49    92.5    53     CRMSCA  
     CORE  . . . . . . . . .   16.02         72    86.7    83     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   15.48        432    71.3   606     CRMSMC  
     WELL ORDERED  . . . . .   15.22        420    71.9   584     CRMSMC  
     NO INTER CONTACTS . . .   15.17        292    72.6   402     CRMSMC  
     SHIFTED CHAIN . . . . .   15.44        264    70.4   375     CRMSMC  
     ALTERNATIVE PARENT  . .   18.93         80    68.4   117     CRMSMC  
     SECONDARY STRUCTURE . .   14.76        216    76.3   283     CRMSMC  
     SHIFTED SS UNITS  . . .    3.58         40    80.0    50     CRMSMC  
     LARGE SHIFTS/INSERTIONS   14.79        144    73.1   197     CRMSMC  
     SURFACE . . . . . . . .   16.56        236    69.0   342     CRMSMC  
     BURIED  . . . . . . . .   14.07        196    74.2   264     CRMSMC  
     CORE  . . . . . . . . .   15.81        288    70.4   409     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   474     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   451     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   293     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   408     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   242     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   235     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   158     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   250     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   224     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   316     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   15.48        432    44.7   966     CRMSALL 
     WELL ORDERED  . . . . .   15.22        420    45.4   926     CRMSALL 
     NO INTER CONTACTS . . .   15.17        292    47.0   621     CRMSALL 
     SHIFTED CHAIN . . . . .   15.44        264    43.8   603     CRMSALL 
     ALTERNATIVE PARENT  . .   18.93         80    41.9   191     CRMSALL 
     SECONDARY STRUCTURE . .   14.76        216    46.7   463     CRMSALL 
     LARGE SHIFTS/INSERTIONS   14.79        144    45.3   318     CRMSALL 
     SURFACE . . . . . . . .   16.56        236    44.5   530     CRMSALL 
     BURIED  . . . . . . . .   14.07        196    45.0   436     CRMSALL 
     CORE  . . . . . . . . .   15.81        288    44.4   648     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     5.36      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     5.01      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3    23.99      3    50.0     6      60-LQDGAY-65   
 CA  LOOP  4     8.72      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5    16.60      4   100.0     4      90-PQSW-93   
 CA  LOOP  6    22.36      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     4.93     36    80.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     4.96     28    82.4    34      45-FTEVKGH-51   
 MC  LOOP  3    24.21     12    41.4    29      60-LQDGAY-65   
 MC  LOOP  4     8.69     20    80.0    25      76-PTDSD-80   
 MC  LOOP  5    16.64     16    80.0    20      90-PQSW-93   
 MC  LOOP  6    21.96     20    80.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     4.93     36    54.5    66      31-SAMRDSTMV-39   
 ALL LOOP  2     4.96     28    49.1    57      45-FTEVKGH-51   
 ALL LOOP  3    24.21     12    26.1    46      60-LQDGAY-65   
 ALL LOOP  4     8.69     20    55.6    36      76-PTDSD-80   
 ALL LOOP  5    16.64     16    44.4    36      90-PQSW-93   
 ALL LOOP  6    21.96     20    40.8    49     100-WSKYN-104  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     2.92      9   100.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     2.05      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3     1.72      3    50.0     6      60-LQDGAY-65   
 CA  LOOP  4     1.49      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     1.92      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     1.62      5   100.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     2.57     36    80.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     1.79     28    82.4    34      45-FTEVKGH-51   
 MC  LOOP  3     2.83     12    41.4    29      60-LQDGAY-65   
 MC  LOOP  4     1.84     20    80.0    25      76-PTDSD-80   
 MC  LOOP  5     2.46     16    80.0    20      90-PQSW-93   
 MC  LOOP  6     1.84     20    80.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     2.57     36    54.5    66      31-SAMRDSTMV-39   
 ALL LOOP  2     1.79     28    49.1    57      45-FTEVKGH-51   
 ALL LOOP  3     2.83     12    26.1    46      60-LQDGAY-65   
 ALL LOOP  4     1.84     20    55.6    36      76-PTDSD-80   
 ALL LOOP  5     2.46     16    44.4    36      90-PQSW-93   
 ALL LOOP  6     1.84     20    40.8    49     100-WSKYN-104  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.447      1.000       0.500    108    87.8   123     ERRCA  
     WELL ORDERED  . . . . .   13.218      1.000       0.500    105    88.2   119     ERRCA  
     NO INTER CONTACTS . . .   13.167      1.000       0.500     73    89.0    82     ERRCA  
     SHIFTED CHAIN . . . . .   13.171      1.000       0.500     66    86.8    76     ERRCA  
     ALTERNATIVE PARENT  . .   16.588      1.000       0.500     20    83.3    24     ERRCA  
     SECONDARY STRUCTURE . .   12.608      1.000       0.500     54    94.7    57     ERRCA  
     LARGE SHIFTS/INSERTIONS   12.032      1.000       0.500     36    90.0    40     ERRCA  
     SURFACE . . . . . . . .   14.227      1.000       0.500     59    84.3    70     ERRCA  
     BURIED  . . . . . . . .   12.509      1.000       0.500     49    92.5    53     ERRCA  
     CORE  . . . . . . . . .   14.155      1.000       0.500     72    86.7    83     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.269      1.000       0.500    432    71.3   606     ERRMC  
     WELL ORDERED  . . . . .   12.999      1.000       0.500    420    71.9   584     ERRMC  
     NO INTER CONTACTS . . .   13.020      1.000       0.500    292    72.6   402     ERRMC  
     SHIFTED CHAIN . . . . .   13.010      1.000       0.500    264    70.4   375     ERRMC  
     ALTERNATIVE PARENT  . .   16.422      1.000       0.500     80    68.4   117     ERRMC  
     SECONDARY STRUCTURE . .   12.376      1.000       0.500    216    76.3   283     ERRMC  
     LARGE SHIFTS/INSERTIONS   11.902      1.000       0.500    144    73.1   197     ERRMC  
     SURFACE . . . . . . . .   14.037      1.000       0.500    236    69.0   342     ERRMC  
     BURIED  . . . . . . . .   12.345      1.000       0.500    196    74.2   264     ERRMC  
     CORE  . . . . . . . . .   13.953      1.000       0.500    288    70.4   409     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   474     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   451     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   293     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   408     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   242     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   299     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0    95     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   235     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   158     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   250     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   224     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   316     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.269      1.000       0.500    432    44.7   966     ERRALL 
     WELL ORDERED  . . . . .   12.999      1.000       0.500    420    45.4   926     ERRALL 
     NO INTER CONTACTS . . .   13.020      1.000       0.500    292    47.0   621     ERRALL 
     SHIFTED CHAIN . . . . .   13.010      1.000       0.500    264    43.8   603     ERRALL 
     ALTERNATIVE PARENT  . .   16.422      1.000       0.500     80    41.9   191     ERRALL 
     SECONDARY STRUCTURE . .   12.376      1.000       0.500    216    46.7   463     ERRALL 
     LARGE SHIFTS/INSERTIONS   11.902      1.000       0.500    144    45.3   318     ERRALL 
     SURFACE . . . . . . . .   14.037      1.000       0.500    236    44.5   530     ERRALL 
     BURIED  . . . . . . . .   12.345      1.000       0.500    196    45.0   436     ERRALL 
     CORE  . . . . . . . . .   13.953      1.000       0.500    288    44.4   648     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         1         9        10        23        38     108     123   DISTCA 
CA  (P)      0.81      7.32      8.13     18.70     30.89             123   DISTCA 
CA  (RMS)    0.98      1.54      1.62      3.31      5.14                   DISTCA 
 
ALL (N)         7        27        48        99       164     432     966   DISTALL 
ALL (P)      0.72      2.80      4.97     10.25     16.98             966   DISTALL 
ALL (RMS)    0.80      1.38      1.96      3.27      5.42                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)          83            72            36          RMSLSI 
CA  (P)       67.48         58.54         29.27          RMSLSI 
CA  (RMS)      1.17         16.02         14.89          RMSLSI 
 
 
 
END of the results output 
