 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0055.inter 
CONANA-PAIR            ../CONANA/T0055.pair 
# 
NUMBER-OF-PARENTS      4 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0055.1esl.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0055.1lit.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0055.1rtm_1.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0055.1htn.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 966 atoms, MODEL 559 atoms, 543 common with TARGET 
           Number of atoms possible to evaluate: 440 
 
 
 CA-RMS TARGET<->PARENT(1esl)	 2.181936 
 
 CA-RMS TARGET<->PARENT(1lit)	 3.321523 
 
 CA-RMS TARGET<->PARENT(1rtm-1)	 2.161827 
 
 CA-RMS TARGET<->PARENT(1htn)	 1.879763 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    76.25           52.5   202    82.8   244     ARMSMC  
     WELL ORDERED  . . . . .    75.76           53.3   195    83.0   235     ARMSMC  
     NO INTER CONTACTS . . .    72.95           54.7   137    83.5   164     ARMSMC  
     SHIFTED CHAIN . . . . .    87.44           45.5   112    74.7   150     ARMSMC  
     ALTERNATIVE PARENT  . .   104.88           33.3    30    65.2    46     ARMSMC  
     SECONDARY STRUCTURE . .    56.54           68.8   109    95.6   114     ARMSMC  
     LARGE SHIFTS/INSERTIONS    98.34           32.8    58    74.4    78     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    88.32           44.6   112    81.2   138     ARMSMC  
     BURIED  . . . . . . . .    57.80           62.2    90    84.9   106     ARMSMC  
     CORE  . . . . . . . . .    65.27           60.4   144    86.7   166     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   105     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   100     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    67     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    97     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    59     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    67     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    20     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    50     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    35     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    77     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    73     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    45     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    58     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    53     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    51     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    17     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    25     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    34     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    20     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    18     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    15     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     5     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    14     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     8     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    15     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     8     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     2     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     3     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =  -0.36709     r(1,2) =  -0.31663     r(1,3) =   0.87464 
 r(2,1) =   0.92976     r(2,2) =  -0.15347     r(2,3) =   0.33467 
 r(3,1) =   0.02826     r(3,2) =   0.93605     r(3,3) =   0.35072 
THE OFFSET VECTOR: 
 v(1) =  42.97659     v(2) =  16.73954     v(3) =  -1.01106 
 
 Number of iteration 58                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.95           (Number of atoms:   25) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    5.99        110    89.4   123     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0545                            CRMSCA  
     WELL ORDERED  . . . . .    6.02        107    89.9   119     CRMSCA  
     NO INTER CONTACTS . . .    5.98         75    91.5    82     CRMSCA  
     SHIFTED CHAIN . . . . .    6.37         64    84.2    76     CRMSCA  
     ALTERNATIVE PARENT  . .    8.40         18    75.0    24     CRMSCA  
     SECONDARY STRUCTURE . .    5.39         56    98.2    57     CRMSCA  
     SHIFTED SS UNITS  . . .    4.53         10   100.0    10     CRMSCA  
     LARGE SHIFTS/INSERTIONS    7.70         33    82.5    40     CRMSCA  
     SURFACE . . . . . . . .    6.45         61    87.1    70     CRMSCA  
     BURIED  . . . . . . . .    5.38         49    92.5    53     CRMSCA  
     CORE  . . . . . . . . .    5.09         77    92.8    83     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    5.86        440    72.6   606     CRMSMC  
     WELL ORDERED  . . . . .    5.88        428    73.3   584     CRMSMC  
     NO INTER CONTACTS . . .    5.86        300    74.6   402     CRMSMC  
     SHIFTED CHAIN . . . . .    6.16        256    68.3   375     CRMSMC  
     ALTERNATIVE PARENT  . .    8.14         72    61.5   117     CRMSMC  
     SECONDARY STRUCTURE . .    5.34        224    79.2   283     CRMSMC  
     SHIFTED SS UNITS  . . .    4.14         40    80.0    50     CRMSMC  
     LARGE SHIFTS/INSERTIONS    7.45        132    67.0   197     CRMSMC  
     SURFACE . . . . . . . .    6.27        244    71.3   342     CRMSMC  
     BURIED  . . . . . . . .    5.30        196    74.2   264     CRMSMC  
     CORE  . . . . . . . . .    5.02        308    75.3   409     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   474     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   451     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   293     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   408     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   242     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   235     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   158     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   250     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   224     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   316     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    5.86        440    45.5   966     CRMSALL 
     WELL ORDERED  . . . . .    5.88        428    46.2   926     CRMSALL 
     NO INTER CONTACTS . . .    5.86        300    48.3   621     CRMSALL 
     SHIFTED CHAIN . . . . .    6.16        256    42.5   603     CRMSALL 
     ALTERNATIVE PARENT  . .    8.14         72    37.7   191     CRMSALL 
     SECONDARY STRUCTURE . .    5.34        224    48.4   463     CRMSALL 
     LARGE SHIFTS/INSERTIONS    7.45        132    41.5   318     CRMSALL 
     SURFACE . . . . . . . .    6.27        244    46.0   530     CRMSALL 
     BURIED  . . . . . . . .    5.30        196    45.0   436     CRMSALL 
     CORE  . . . . . . . . .    5.02        308    47.5   648     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     4.62      8    88.9     9      31-SAMRDSTMV-39   
 CA  LOOP  2     8.62      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3    10.53      3    50.0     6      60-LQDGAY-65   
 CA  LOOP  4     5.34      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     9.77      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     9.64      4    80.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     4.16     32    71.1    45      31-SAMRDSTMV-39   
 MC  LOOP  2     8.66     28    82.4    34      45-FTEVKGH-51   
 MC  LOOP  3     9.93     12    41.4    29      60-LQDGAY-65   
 MC  LOOP  4     5.12     20    80.0    25      76-PTDSD-80   
 MC  LOOP  5     9.53     16    80.0    20      90-PQSW-93   
 MC  LOOP  6     9.20     16    64.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     4.16     32    48.5    66      31-SAMRDSTMV-39   
 ALL LOOP  2     8.66     28    49.1    57      45-FTEVKGH-51   
 ALL LOOP  3     9.93     12    26.1    46      60-LQDGAY-65   
 ALL LOOP  4     5.12     20    55.6    36      76-PTDSD-80   
 ALL LOOP  5     9.53     16    44.4    36      90-PQSW-93   
 ALL LOOP  6     9.20     16    32.7    49     100-WSKYN-104  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     3.40      8    88.9     9      31-SAMRDSTMV-39   
 CA  LOOP  2     3.11      7   100.0     7      45-FTEVKGH-51   
 CA  LOOP  3     0.16      3    50.0     6      60-LQDGAY-65   
 CA  LOOP  4     0.85      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     1.49      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     2.59      4    80.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     3.08     32    71.1    45      31-SAMRDSTMV-39   
 MC  LOOP  2     3.42     28    82.4    34      45-FTEVKGH-51   
 MC  LOOP  3     1.97     12    41.4    29      60-LQDGAY-65   
 MC  LOOP  4     1.51     20    80.0    25      76-PTDSD-80   
 MC  LOOP  5     1.75     16    80.0    20      90-PQSW-93   
 MC  LOOP  6     2.69     16    64.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     3.08     32    48.5    66      31-SAMRDSTMV-39   
 ALL LOOP  2     3.42     28    49.1    57      45-FTEVKGH-51   
 ALL LOOP  3     1.97     12    26.1    46      60-LQDGAY-65   
 ALL LOOP  4     1.51     20    55.6    36      76-PTDSD-80   
 ALL LOOP  5     1.75     16    44.4    36      90-PQSW-93   
 ALL LOOP  6     2.69     16    32.7    49     100-WSKYN-104  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.268      1.000       0.500    110    89.4   123     ERRCA  
     WELL ORDERED  . . . . .    5.295      1.000       0.500    107    89.9   119     ERRCA  
     NO INTER CONTACTS . . .    5.337      1.000       0.500     75    91.5    82     ERRCA  
     SHIFTED CHAIN . . . . .    5.596      1.000       0.500     64    84.2    76     ERRCA  
     ALTERNATIVE PARENT  . .    7.555      1.000       0.500     18    75.0    24     ERRCA  
     SECONDARY STRUCTURE . .    4.768      1.000       0.500     56    98.2    57     ERRCA  
     LARGE SHIFTS/INSERTIONS    6.886      1.000       0.500     33    82.5    40     ERRCA  
     SURFACE . . . . . . . .    5.632      1.000       0.500     61    87.1    70     ERRCA  
     BURIED  . . . . . . . .    4.815      1.000       0.500     49    92.5    53     ERRCA  
     CORE  . . . . . . . . .    4.575      1.000       0.500     77    92.8    83     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.124      1.000       0.500    440    72.6   606     ERRMC  
     WELL ORDERED  . . . . .    5.142      1.000       0.500    428    73.3   584     ERRMC  
     NO INTER CONTACTS . . .    5.200      1.000       0.500    300    74.6   402     ERRMC  
     SHIFTED CHAIN . . . . .    5.373      1.000       0.500    256    68.3   375     ERRMC  
     ALTERNATIVE PARENT  . .    7.309      1.000       0.500     72    61.5   117     ERRMC  
     SECONDARY STRUCTURE . .    4.670      1.000       0.500    224    79.2   283     ERRMC  
     LARGE SHIFTS/INSERTIONS    6.615      1.000       0.500    132    67.0   197     ERRMC  
     SURFACE . . . . . . . .    5.445      1.000       0.500    244    71.3   342     ERRMC  
     BURIED  . . . . . . . .    4.723      1.000       0.500    196    74.2   264     ERRMC  
     CORE  . . . . . . . . .    4.484      1.000       0.500    308    75.3   409     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   474     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   451     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   293     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   408     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   242     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   299     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0    95     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   235     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   158     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   250     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   224     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   316     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.124      1.000       0.500    440    45.5   966     ERRALL 
     WELL ORDERED  . . . . .    5.142      1.000       0.500    428    46.2   926     ERRALL 
     NO INTER CONTACTS . . .    5.200      1.000       0.500    300    48.3   621     ERRALL 
     SHIFTED CHAIN . . . . .    5.373      1.000       0.500    256    42.5   603     ERRALL 
     ALTERNATIVE PARENT  . .    7.309      1.000       0.500     72    37.7   191     ERRALL 
     SECONDARY STRUCTURE . .    4.670      1.000       0.500    224    48.4   463     ERRALL 
     LARGE SHIFTS/INSERTIONS    6.615      1.000       0.500    132    41.5   318     ERRALL 
     SURFACE . . . . . . . .    5.445      1.000       0.500    244    46.0   530     ERRALL 
     BURIED  . . . . . . . .    4.723      1.000       0.500    196    45.0   436     ERRALL 
     CORE  . . . . . . . . .    4.484      1.000       0.500    308    47.5   648     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         3        12        27        58       101     110     123   DISTCA 
CA  (P)      2.44      9.76     21.95     47.15     82.11             123   DISTCA 
CA  (RMS)    0.89      1.55      2.02      3.37      5.20                   DISTCA 
 
ALL (N)         6        46       116       240       406     440     966   DISTALL 
ALL (P)      0.62      4.76     12.01     24.84     42.03             966   DISTALL 
ALL (RMS)    0.81      1.54      2.11      3.25      5.12                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)          83            77            33          RMSLSI 
CA  (P)       67.48         62.60         26.83          RMSLSI 
CA  (RMS)      1.17          5.09          7.70          RMSLSI 
 
 
 
END of the results output 
