 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0055.inter 
CONANA-PAIR            ../CONANA/T0055.pair 
# 
NUMBER-OF-PARENTS      4 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0055.1esl.rot 
ALIGNMENT-DALI(2)      ../PARENTS/casp3.T0055.1lit.rot 
ALIGNMENT-DALI(3)      ../PARENTS/casp3.T0055.1rtm_1.rot 
ALIGNMENT-DALI(4)      ../PARENTS/casp3.T0055.1htn.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 966 atoms, MODEL 852 atoms, 836 common with TARGET 
           Number of atoms possible to evaluate: 124 
 
 
 CA-RMS TARGET<->PARENT(1esl)	 2.181936 
 
 CA-RMS TARGET<->PARENT(1lit)	 3.321523 
 
 CA-RMS TARGET<->PARENT(1rtm-1)	 2.161827 
 
 CA-RMS TARGET<->PARENT(1htn)	 1.879763 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    66.34           63.3    60    24.6   244     ARMSMC  
     WELL ORDERED  . . . . .    66.34           63.3    60    25.5   235     ARMSMC  
     NO INTER CONTACTS . . .    64.84           64.9    37    22.6   164     ARMSMC  
     SHIFTED CHAIN . . . . .    70.78           58.0    50    33.3   150     ARMSMC  
     ALTERNATIVE PARENT  . .    90.34           22.2     9    19.6    46     ARMSMC  
     SECONDARY STRUCTURE . .    25.92           90.0    10     8.8   114     ARMSMC  
     LARGE SHIFTS/INSERTIONS    94.12           40.0    25    32.1    78     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    78.59           55.3    38    27.5   138     ARMSMC  
     BURIED  . . . . . . . .    36.55           77.3    22    20.8   106     ARMSMC  
     CORE  . . . . . . . . .    34.90           80.0    35    21.1   166     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   105     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0   100     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    67     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    97     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    59     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    67     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    20     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    50     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    35     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    77     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    73     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    45     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    58     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    53     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    51     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0    17     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    25     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    34     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    20     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    11     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    18     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    15     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     5     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    14     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     8     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    15     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     8     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0     4     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     2     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     5     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     3     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.76612     r(1,2) =   0.31374     r(1,3) =  -0.56091 
 r(2,1) =  -0.08932     r(2,2) =  -0.81230     r(2,3) =  -0.57636 
 r(3,1) =  -0.63645     r(3,2) =   0.49166     r(3,3) =  -0.59430 
THE OFFSET VECTOR: 
 v(1) = -12.25664     v(2) = 129.36307     v(3) =  29.10803 
 
 Number of iteration 24                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   3.55           (Number of atoms:   31) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    3.55         31    25.2   123     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1145                            CRMSCA  
     WELL ORDERED  . . . . .    3.55         31    26.1   119     CRMSCA  
     NO INTER CONTACTS . . .    3.49         19    23.2    82     CRMSCA  
     SHIFTED CHAIN . . . . .    3.79         26    34.2    76     CRMSCA  
     ALTERNATIVE PARENT  . .    4.15          5    20.8    24     CRMSCA  
     SECONDARY STRUCTURE . .    1.86          5     8.8    57     CRMSCA  
     SHIFTED SS UNITS  . . .    0.00          0     0.0    10     CRMSCA  
     LARGE SHIFTS/INSERTIONS    4.80         13    32.5    40     CRMSCA  
     SURFACE . . . . . . . .    4.13         20    28.6    70     CRMSCA  
     BURIED  . . . . . . . .    2.12         11    20.8    53     CRMSCA  
     CORE  . . . . . . . . .    2.24         18    21.7    83     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    3.41        124    20.5   606     CRMSMC  
     WELL ORDERED  . . . . .    3.41        124    21.2   584     CRMSMC  
     NO INTER CONTACTS . . .    3.46         76    18.9   402     CRMSMC  
     SHIFTED CHAIN . . . . .    3.64        104    27.7   375     CRMSMC  
     ALTERNATIVE PARENT  . .    4.01         20    17.1   117     CRMSMC  
     SECONDARY STRUCTURE . .    1.80         20     7.1   283     CRMSMC  
     SHIFTED SS UNITS  . . .    0.00          0     0.0    50     CRMSMC  
     LARGE SHIFTS/INSERTIONS    4.57         52    26.4   197     CRMSMC  
     SURFACE . . . . . . . .    3.92         80    23.4   342     CRMSMC  
     BURIED  . . . . . . . .    2.22         44    16.7   264     CRMSMC  
     CORE  . . . . . . . . .    2.24         72    17.6   409     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   474     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   451     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   293     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   408     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   242     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   235     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0   158     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   250     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   224     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   316     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    3.41        124    12.8   966     CRMSALL 
     WELL ORDERED  . . . . .    3.41        124    13.4   926     CRMSALL 
     NO INTER CONTACTS . . .    3.46         76    12.2   621     CRMSALL 
     SHIFTED CHAIN . . . . .    3.64        104    17.2   603     CRMSALL 
     ALTERNATIVE PARENT  . .    4.01         20    10.5   191     CRMSALL 
     SECONDARY STRUCTURE . .    1.80         20     4.3   463     CRMSALL 
     LARGE SHIFTS/INSERTIONS    4.57         52    16.4   318     CRMSALL 
     SURFACE . . . . . . . .    3.92         80    15.1   530     CRMSALL 
     BURIED  . . . . . . . .    2.22         44    10.1   436     CRMSALL 
     CORE  . . . . . . . . .    2.24         72    11.1   648     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     0.00      0     0.0     9      31-SAMRDSTMV-39   
 CA  LOOP  2     0.00      0     0.0     7      45-FTEVKGH-51   
 CA  LOOP  3     0.00      0     0.0     6      60-LQDGAY-65   
 CA  LOOP  4     5.74      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     3.64      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     4.52      4    80.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     0.00      0     0.0    45      31-SAMRDSTMV-39   
 MC  LOOP  2     0.00      0     0.0    34      45-FTEVKGH-51   
 MC  LOOP  3     0.00      0     0.0    29      60-LQDGAY-65   
 MC  LOOP  4     5.45     20    80.0    25      76-PTDSD-80   
 MC  LOOP  5     3.51     16    80.0    20      90-PQSW-93   
 MC  LOOP  6     4.27     16    64.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     0.00      0     0.0    66      31-SAMRDSTMV-39   
 ALL LOOP  2     0.00      0     0.0    57      45-FTEVKGH-51   
 ALL LOOP  3     0.00      0     0.0    46      60-LQDGAY-65   
 ALL LOOP  4     5.45     20    55.6    36      76-PTDSD-80   
 ALL LOOP  5     3.51     16    44.4    36      90-PQSW-93   
 ALL LOOP  6     4.27     16    32.7    49     100-WSKYN-104  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 CA  LOOP  4     1.72      5   100.0     5      76-PTDSD-80   
 CA  LOOP  5     2.05      4   100.0     4      90-PQSW-93   
 CA  LOOP  6     1.16      4    80.0     5     100-WSKYN-104  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 MC  LOOP  4     1.68     20    80.0    25      76-PTDSD-80   
 MC  LOOP  5     2.36     16    80.0    20      90-PQSW-93   
 MC  LOOP  6     1.40     16    64.0    25     100-WSKYN-104  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 WARNING! LOOP  1 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  2 cannot be considered (not enough atoms). 
 
 WARNING! LOOP  3 cannot be considered (not enough atoms). 
 
 ALL LOOP  4     1.68     20    55.6    36      76-PTDSD-80   
 ALL LOOP  5     2.36     16    44.4    36      90-PQSW-93   
 ALL LOOP  6     1.40     16    32.7    49     100-WSKYN-104  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.110      1.000       0.500     31    25.2   123     ERRCA  
     WELL ORDERED  . . . . .    3.110      1.000       0.500     31    26.1   119     ERRCA  
     NO INTER CONTACTS . . .    2.960      1.000       0.500     19    23.2    82     ERRCA  
     SHIFTED CHAIN . . . . .    3.366      1.000       0.500     26    34.2    76     ERRCA  
     ALTERNATIVE PARENT  . .    3.768      1.000       0.500      5    20.8    24     ERRCA  
     SECONDARY STRUCTURE . .    1.840      1.000       0.500      5     8.8    57     ERRCA  
     LARGE SHIFTS/INSERTIONS    4.453      1.000       0.500     13    32.5    40     ERRCA  
     SURFACE . . . . . . . .    3.671      1.000       0.500     20    28.6    70     ERRCA  
     BURIED  . . . . . . . .    2.089      1.000       0.500     11    20.8    53     ERRCA  
     CORE  . . . . . . . . .    2.140      1.000       0.500     18    21.7    83     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.011      1.000       0.500    124    20.5   606     ERRMC  
     WELL ORDERED  . . . . .    3.011      1.000       0.500    124    21.2   584     ERRMC  
     NO INTER CONTACTS . . .    2.973      1.000       0.500     76    18.9   402     ERRMC  
     SHIFTED CHAIN . . . . .    3.247      1.000       0.500    104    27.7   375     ERRMC  
     ALTERNATIVE PARENT  . .    3.692      1.000       0.500     20    17.1   117     ERRMC  
     SECONDARY STRUCTURE . .    1.749      1.000       0.500     20     7.1   283     ERRMC  
     LARGE SHIFTS/INSERTIONS    4.236      1.000       0.500     52    26.4   197     ERRMC  
     SURFACE . . . . . . . .    3.490      1.000       0.500     80    23.4   342     ERRMC  
     BURIED  . . . . . . . .    2.141      1.000       0.500     44    16.7   264     ERRMC  
     CORE  . . . . . . . . .    2.127      1.000       0.500     72    17.6   409     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   474     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   451     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   293     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   408     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   242     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   299     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0    95     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   235     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0   158     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   250     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   224     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   316     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.011      1.000       0.500    124    12.8   966     ERRALL 
     WELL ORDERED  . . . . .    3.011      1.000       0.500    124    13.4   926     ERRALL 
     NO INTER CONTACTS . . .    2.973      1.000       0.500     76    12.2   621     ERRALL 
     SHIFTED CHAIN . . . . .    3.247      1.000       0.500    104    17.2   603     ERRALL 
     ALTERNATIVE PARENT  . .    3.692      1.000       0.500     20    10.5   191     ERRALL 
     SECONDARY STRUCTURE . .    1.749      1.000       0.500     20     4.3   463     ERRALL 
     LARGE SHIFTS/INSERTIONS    4.236      1.000       0.500     52    16.4   318     ERRALL 
     SURFACE . . . . . . . .    3.490      1.000       0.500     80    15.1   530     ERRALL 
     BURIED  . . . . . . . .    2.141      1.000       0.500     44    10.1   436     ERRALL 
     CORE  . . . . . . . . .    2.127      1.000       0.500     72    11.1   648     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         1         8        19        27        31      31     123   DISTCA 
CA  (P)      0.81      6.50     15.45     21.95     25.20             123   DISTCA 
CA  (RMS)    0.86      1.61      2.08      2.75      3.55                   DISTCA 
 
ALL (N)         4        35        81       108       124     124     966   DISTALL 
ALL (P)      0.41      3.62      8.39     11.18     12.84             966   DISTALL 
ALL (RMS)    0.77      1.62      2.13      2.68      3.41                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)          83            18            13          RMSLSI 
CA  (P)       67.48         14.63         10.57          RMSLSI 
CA  (RMS)      1.17          2.24          4.80          RMSLSI 
 
 
 
END of the results output 
