 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0048.inter 
CONANA-PAIR            ../CONANA/T0048.pair 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0048.1dcp_E.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 923 atoms, MODEL 939 atoms, 923 common with TARGET 
           Number of atoms possible to evaluate: 923 
 
 
 CA-RMS TARGET<->PARENT(1dcp-E)	 1.412918 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    87.83           48.7   230   100.0   230     ARMSMC  
     WELL ORDERED  . . . . .    88.85           47.8   207   100.0   207     ARMSMC  
     NO INTER CONTACTS . . .    91.69           45.1   164   100.0   164     ARMSMC  
     SHIFTED CHAIN . . . . .    85.29           52.0   152   100.0   152     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    83.94           50.8   118   100.0   118     ARMSMC  
     LARGE SHIFTS/INSERTIONS    88.92           50.0    46   100.0    46     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    84.50           53.7   136   100.0   136     ARMSMC  
     BURIED  . . . . . . . .    92.43           41.5    94   100.0    94     ARMSMC  
     CORE  . . . . . . . . .    87.56           48.4   184   100.0   184     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    85.42           45.8    96   100.0    96     ARMSSC1 
     WELL ORDERED  . . . . .    74.98           51.4    74   100.0    74     ARMSSC1 
     NO INTER CONTACTS . . .    91.28           41.8    67   100.0    67     ARMSSC1 
     RELIABLE SIDE CHAINS  .    84.81           47.7    88   100.0    88     ARMSSC1 
     CHANGED ANGLES  . . . .    86.65           45.0    60   100.0    60     ARMSSC1 
     SHIFTED CHAIN . . . . .    87.15           45.2    62   100.0    62     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .    82.92           46.0    50   100.0    50     ARMSSC1 
     LARGE SHIFTS/INSERTIONS    88.76           41.2    17   100.0    17     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .    88.38           45.6    57   100.0    57     ARMSSC1 
     BURIED  . . . . . . . .    80.90           46.2    39   100.0    39     ARMSSC1 
     CORE  . . . . . . . . .    84.68           46.8    79   100.0    79     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    74.03           50.7    75   100.0    75     ARMSSC2 
     WELL ORDERED  . . . . .    75.67           50.0    52   100.0    52     ARMSSC2 
     NO INTER CONTACTS . . .    73.64           54.0    50   100.0    50     ARMSSC2 
     RELIABLE SIDE CHAINS  .    69.46           55.6    54   100.0    54     ARMSSC2 
     CHANGED ANGLES  . . . .    77.07           45.5    55   100.0    55     ARMSSC2 
     SHIFTED CHAIN . . . . .    68.02           52.1    48   100.0    48     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .    79.27           52.6    38   100.0    38     ARMSSC2 
     LARGE SHIFTS/INSERTIONS    69.70           38.5    13   100.0    13     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .    77.14           44.7    47   100.0    47     ARMSSC2 
     BURIED  . . . . . . . .    68.49           60.7    28   100.0    28     ARMSSC2 
     CORE  . . . . . . . . .    74.91           53.2    62   100.0    62     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    79.00           34.5    29   100.0    29     ARMSSC3 
     WELL ORDERED  . . . . .    87.51           30.8    13   100.0    13     ARMSSC3 
     NO INTER CONTACTS . . .    66.58           35.0    20   100.0    20     ARMSSC3 
     RELIABLE SIDE CHAINS  .    78.29           30.8    26   100.0    26     ARMSSC3 
     CHANGED ANGLES  . . . .    79.24           35.7    28   100.0    28     ARMSSC3 
     SHIFTED CHAIN . . . . .    81.59           36.4    22   100.0    22     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .    75.74           35.3    17   100.0    17     ARMSSC3 
     LARGE SHIFTS/INSERTIONS    88.57           28.6     7   100.0     7     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .    86.49           26.1    23   100.0    23     ARMSSC3 
     BURIED  . . . . . . . .    38.59           66.7     6   100.0     6     ARMSSC3 
     CORE  . . . . . . . . .    75.70           36.4    22   100.0    22     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    93.46           30.8    13   100.0    13     ARMSSC4 
     WELL ORDERED  . . . . .   110.19           33.3     3   100.0     3     ARMSSC4 
     NO INTER CONTACTS . . .   107.74           42.9     7   100.0     7     ARMSSC4 
     RELIABLE SIDE CHAINS  .    93.46           30.8    13   100.0    13     ARMSSC4 
     CHANGED ANGLES  . . . .    97.26           25.0    12   100.0    12     ARMSSC4 
     SHIFTED CHAIN . . . . .   101.58           18.2    11   100.0    11     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .   107.85           42.9     7   100.0     7     ARMSSC4 
     LARGE SHIFTS/INSERTIONS    83.77            0.0     4   100.0     4     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .    86.69           27.3    11   100.0    11     ARMSSC4 
     BURIED  . . . . . . . .   124.23           50.0     2   100.0     2     ARMSSC4 
     CORE  . . . . . . . . .    97.45           44.4     9   100.0     9     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =   0.49732     r(1,2) =  -0.11984     r(1,3) =   0.85925 
 r(2,1) =   0.86739     r(2,2) =   0.08879     r(2,3) =  -0.48965 
 r(3,1) =  -0.01762     r(3,2) =   0.98881     r(3,3) =   0.14811 
THE OFFSET VECTOR: 
 v(1) = -63.47647     v(2) =   4.78084     v(3) =  -6.46268 
 
 Number of iteration 25                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.78           (Number of atoms:    9) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   20.63        116   100.0   116     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1778                            CRMSCA  
     WELL ORDERED  . . . . .   21.57        105   100.0   105     CRMSCA  
     NO INTER CONTACTS . . .   20.34         82   100.0    82     CRMSCA  
     SHIFTED CHAIN . . . . .   21.26         77   100.0    77     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .   21.22         59   100.0    59     CRMSCA  
     SHIFTED SS UNITS  . . .    7.11          3   100.0     3     CRMSCA  
     LARGE SHIFTS/INSERTIONS   18.29         24   100.0    24     CRMSCA  
     SURFACE . . . . . . . .   20.89         69   100.0    69     CRMSCA  
     BURIED  . . . . . . . .   20.23         47   100.0    47     CRMSCA  
     CORE  . . . . . . . . .   21.20         92   100.0    92     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   20.61        573   100.0   573     CRMSMC  
     WELL ORDERED  . . . . .   21.45        520   100.0   520     CRMSMC  
     NO INTER CONTACTS . . .   20.38        407   100.0   407     CRMSMC  
     SHIFTED CHAIN . . . . .   21.26        380   100.0   380     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .   21.27        293   100.0   293     CRMSMC  
     SHIFTED SS UNITS  . . .    7.07         15   100.0    15     CRMSMC  
     LARGE SHIFTS/INSERTIONS   18.17        118   100.0   118     CRMSMC  
     SURFACE . . . . . . . .   20.81        341   100.0   341     CRMSMC  
     BURIED  . . . . . . . .   20.30        232   100.0   232     CRMSMC  
     CORE  . . . . . . . . .   21.19        455   100.0   455     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   21.48        459   100.0   459     CRMSSC  
     WELL ORDERED  . . . . .   21.70        340   100.0   340     CRMSSC  
     NO INTER CONTACTS . . .   21.33        319   100.0   319     CRMSSC  
     RELIABLE SIDE CHAINS  .   21.25        381   100.0   381     CRMSSC  
     CHANGED ANGLES  . . . .   20.59        248   100.0   248     CRMSSC  
     SECONDARY STRUCTURE . .   21.19        239   100.0   239     CRMSSC  
     LARGE SHIFTS/INSERTIONS   19.56         81   100.0    81     CRMSSC  
     SURFACE . . . . . . . .   21.68        270   100.0   270     CRMSSC  
     BURIED  . . . . . . . .   21.19        189   100.0   189     CRMSSC  
     CORE  . . . . . . . . .   21.87        378   100.0   378     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   21.04        923   100.0   923     CRMSALL 
     WELL ORDERED  . . . . .   21.56        764   100.0   764     CRMSALL 
     NO INTER CONTACTS . . .   20.87        647   100.0   647     CRMSALL 
     SHIFTED CHAIN . . . . .   21.52        599   100.0   599     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .   21.26        475   100.0   475     CRMSALL 
     LARGE SHIFTS/INSERTIONS   18.74        177   100.0   177     CRMSALL 
     SURFACE . . . . . . . .   21.21        546   100.0   546     CRMSALL 
     BURIED  . . . . . . . .   20.80        377   100.0   377     CRMSALL 
     CORE  . . . . . . . . .   21.55        746   100.0   746     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1    18.27     15   100.0    15       3-ALTQAHCEACRADAP-17   
 CA  LOOP  2    22.12      5   100.0     5      38-VRDGI-42   
 CA  LOOP  3    11.97      4   100.0     4     115-EGRK-118  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1    18.17     75   100.0    75       3-ALTQAHCEACRADAP-17   
 MC  LOOP  2    21.81     24   100.0    24      38-VRDGI-42   
 MC  LOOP  3    12.05     19   100.0    19     115-EGRK-118  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1    19.08    106   100.0   106       3-ALTQAHCEACRADAP-17   
 ALL LOOP  2    21.96     38   100.0    38      38-VRDGI-42   
 ALL LOOP  3    12.64     33   100.0    33     115-EGRK-118  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     5.66     15   100.0    15       3-ALTQAHCEACRADAP-17   
 CA  LOOP  2     3.42      5   100.0     5      38-VRDGI-42   
 CA  LOOP  3     2.25      4   100.0     4     115-EGRK-118  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     5.74     75   100.0    75       3-ALTQAHCEACRADAP-17   
 MC  LOOP  2     4.10     24   100.0    24      38-VRDGI-42   
 MC  LOOP  3     2.93     19   100.0    19     115-EGRK-118  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     6.87    106   100.0   106       3-ALTQAHCEACRADAP-17   
 ALL LOOP  2     5.83     38   100.0    38      38-VRDGI-42   
 ALL LOOP  3     3.70     33   100.0    33     115-EGRK-118  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.810      0.894       0.447    116   100.0   116     ERRCA  
     WELL ORDERED  . . . . .   18.033      0.905       0.452    105   100.0   105     ERRCA  
     NO INTER CONTACTS . . .   16.456      0.887       0.444     82   100.0    82     ERRCA  
     SHIFTED CHAIN . . . . .   17.293      0.902       0.451     77   100.0    77     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .   17.528      0.900       0.450     59   100.0    59     ERRCA  
     LARGE SHIFTS/INSERTIONS   15.848      0.920       0.460     24   100.0    24     ERRCA  
     SURFACE . . . . . . . .   16.925      0.893       0.446     69   100.0    69     ERRCA  
     BURIED  . . . . . . . .   16.642      0.897       0.448     47   100.0    47     ERRCA  
     CORE  . . . . . . . . .   17.061      0.888       0.444     92   100.0    92     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.803      0.897       0.448    573   100.0   573     ERRMC  
     WELL ORDERED  . . . . .   17.881      0.903       0.452    520   100.0   520     ERRMC  
     NO INTER CONTACTS . . .   16.529      0.890       0.445    407   100.0   407     ERRMC  
     SHIFTED CHAIN . . . . .   17.293      0.904       0.452    380   100.0   380     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .   17.573      0.897       0.448    293   100.0   293     ERRMC  
     LARGE SHIFTS/INSERTIONS   15.731      0.922       0.461    118   100.0   118     ERRMC  
     SURFACE . . . . . . . .   16.901      0.898       0.449    341   100.0   341     ERRMC  
     BURIED  . . . . . . . .   16.659      0.895       0.447    232   100.0   232     ERRMC  
     CORE  . . . . . . . . .   17.081      0.890       0.445    455   100.0   455     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   18.109      0.911       0.455    459   100.0   459     ERRSC  
     WELL ORDERED  . . . . .   18.695      0.915       0.458    340   100.0   340     ERRSC  
     NO INTER CONTACTS . . .   18.032      0.912       0.456    319   100.0   319     ERRSC  
     RELIABLE SIDE CHAINS  .   17.868      0.909       0.455    381   100.0   381     ERRSC  
     CHANGED ANGLES  . . . .   17.008      0.905       0.452    248   100.0   248     ERRSC  
     SHIFTED CHAIN . . . . .   18.121      0.909       0.454    291   100.0   291     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .   18.102      0.918       0.459    239   100.0   239     ERRSC  
     LARGE SHIFTS/INSERTIONS   17.303      0.930       0.465     81   100.0    81     ERRSC  
     SURFACE . . . . . . . .   17.930      0.907       0.454    270   100.0   270     ERRSC  
     BURIED  . . . . . . . .   18.364      0.916       0.458    189   100.0   189     ERRSC  
     CORE  . . . . . . . . .   18.281      0.907       0.453    378   100.0   378     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.437      0.903       0.451    923   100.0   923     ERRALL 
     WELL ORDERED  . . . . .   18.226      0.908       0.454    764   100.0   764     ERRALL 
     NO INTER CONTACTS . . .   17.257      0.900       0.450    647   100.0   647     ERRALL 
     SHIFTED CHAIN . . . . .   17.647      0.906       0.453    599   100.0   599     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .   17.838      0.905       0.453    475   100.0   475     ERRALL 
     LARGE SHIFTS/INSERTIONS   16.382      0.925       0.463    177   100.0   177     ERRALL 
     SURFACE . . . . . . . .   17.379      0.902       0.451    546   100.0   546     ERRALL 
     BURIED  . . . . . . . .   17.521      0.904       0.452    377   100.0   377     ERRALL 
     CORE  . . . . . . . . .   17.688      0.898       0.449    746   100.0   746     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         2         5        10        18        41     116     116   DISTCA 
CA  (P)      1.72      4.31      8.62     15.52     35.34             116   DISTCA 
CA  (RMS)    0.97      1.26      1.92      3.01      6.12                   DISTCA 
 
ALL (N)         3        21        50       121       293     923     923   DISTALL 
ALL (P)      0.33      2.28      5.42     13.11     31.74             923   DISTALL 
ALL (RMS)    0.92      1.48      2.17      3.37      6.35                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)          92            92            24          RMSLSI 
CA  (P)       79.31         79.31         20.69          RMSLSI 
CA  (RMS)      1.19         21.20         18.29          RMSLSI 
 
 
 
END of the results output 
