 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
CONANA-INTER           ../CONANA/T0048.inter 
CONANA-PAIR            ../CONANA/T0048.pair 
# 
NUMBER-OF-PARENTS      1 
ALIGNMENT-DALI(1)      ../PARENTS/casp3.T0048.1dcp_E.rot 
# 
ITER-CUTOFF            2.5       #    DISTANCE cutoff (for CA (iter))  
# 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           0         #    1 - ON, 0 - OFF  
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
ALIGNMENT-OUTPUT    0         #    1 - ON, 0 - OFF 
# 
# Calculation parameters 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff  
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff  
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)  
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
SC-SWAPPING         1         #    1 - ON, 0 - OFF  
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
LIGAND-DIST1        4.0       #    Ligand contact: contact with ligand cutoff 
LIGAND-DIST2        6.0       #    Ligand contact: protein neighborhood cutoff 
PARENT-DIST3        2.5       #    target-parent (dist > 2.5) 
# 
CRMS-METHOD         3         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
# 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
# Reading the coordinates set (1) 
 
 
# Evaluating the coordinates set (1) 
 
# WARNING! TARGET 923 atoms, MODEL 472 atoms, 464 common with TARGET 
           Number of atoms possible to evaluate: 464 
 
 
 CA-RMS TARGET<->PARENT(1dcp-E)	 1.412918 
 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    81.12           50.4   230   100.0   230     ARMSMC  
     WELL ORDERED  . . . . .    82.06           49.3   207   100.0   207     ARMSMC  
     NO INTER CONTACTS . . .    79.76           53.0   164   100.0   164     ARMSMC  
     SHIFTED CHAIN . . . . .    83.38           48.7   152   100.0   152     ARMSMC  
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSMC  
     SECONDARY STRUCTURE . .    74.34           58.5   118   100.0   118     ARMSMC  
     LARGE SHIFTS/INSERTIONS    99.34           30.4    46   100.0    46     ARMSMC  
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSMC  
     SURFACE . . . . . . . .    83.05           50.0   136   100.0   136     ARMSMC  
     BURIED  . . . . . . . .    78.24           51.1    94   100.0    94     ARMSMC  
     CORE  . . . . . . . . .    75.88           55.4   184   100.0   184     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    96     ARMSSC1 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    74     ARMSSC1 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    67     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    88     ARMSSC1 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    60     ARMSSC1 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    62     ARMSSC1 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    50     ARMSSC1 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    17     ARMSSC1 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC1 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    79     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    75     ARMSSC2 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    52     ARMSSC2 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    50     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    54     ARMSSC2 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    55     ARMSSC2 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    48     ARMSSC2 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    38     ARMSSC2 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0    13     ARMSSC2 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    47     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC2 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    62     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    29     ARMSSC3 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0    13     ARMSSC3 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0    20     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    26     ARMSSC3 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    22     ARMSSC3 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    17     ARMSSC3 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     7     ARMSSC3 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC3 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0    22     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC4 
     WELL ORDERED  . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     NO INTER CONTACTS . . .     0.00            0.0     0     0.0     7     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    13     ARMSSC4 
     CHANGED ANGLES  . . . .     0.00            0.0     0     0.0    12     ARMSSC4 
     SHIFTED CHAIN . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     ALTERNATIVE PARENT  . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     7     ARMSSC4 
     LARGE SHIFTS/INSERTIONS     0.00            0.0     0     0.0     4     ARMSSC4 
     LIGAND CONTACTS . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
     CORE  . . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
UNITARY 3.3 RIGHT HANDED ROTATION MATRIX: 
 r(1,1) =  -0.49832     r(1,2) =  -0.65953     r(1,3) =  -0.56276 
 r(2,1) =   0.63150     r(2,2) =  -0.72085     r(2,3) =   0.28562 
 r(3,1) =  -0.59404     r(3,2) =  -0.21305     r(3,3) =   0.77571 
THE OFFSET VECTOR: 
 v(1) =  36.58233     v(2) =   0.64854     v(3) =   0.90022 
 
 Number of iteration 25                   (CUTOFF:  2.50) 
 TEST (CA iter) RMS =   1.73           (Number of atoms:   10) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   21.03        116   100.0   116     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1813                            CRMSCA  
     WELL ORDERED  . . . . .   20.72        105   100.0   105     CRMSCA  
     NO INTER CONTACTS . . .   22.23         82   100.0    82     CRMSCA  
     SHIFTED CHAIN . . . . .   20.61         77   100.0    77     CRMSCA  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSCA  
     SECONDARY STRUCTURE . .   23.01         59   100.0    59     CRMSCA  
     SHIFTED SS UNITS  . . .   15.48          3   100.0     3     CRMSCA  
     LARGE SHIFTS/INSERTIONS   20.45         24   100.0    24     CRMSCA  
     SURFACE . . . . . . . .   18.80         69   100.0    69     CRMSCA  
     BURIED  . . . . . . . .   23.93         47   100.0    47     CRMSCA  
     CORE  . . . . . . . . .   21.18         92   100.0    92     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   21.03        464    81.0   573     CRMSMC  
     WELL ORDERED  . . . . .   20.84        424    81.5   520     CRMSMC  
     NO INTER CONTACTS . . .   22.27        328    80.6   407     CRMSMC  
     SHIFTED CHAIN . . . . .   20.58        308    81.1   380     CRMSMC  
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSMC  
     SECONDARY STRUCTURE . .   23.02        236    80.5   293     CRMSMC  
     SHIFTED SS UNITS  . . .   15.50         12    80.0    15     CRMSMC  
     LARGE SHIFTS/INSERTIONS   20.25         96    81.4   118     CRMSMC  
     SURFACE . . . . . . . .   18.76        276    80.9   341     CRMSMC  
     BURIED  . . . . . . . .   23.98        188    81.0   232     CRMSMC  
     CORE  . . . . . . . . .   21.23        368    80.9   455     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   459     CRMSSC  
     WELL ORDERED  . . . . .    0.00          0     0.0   340     CRMSSC  
     NO INTER CONTACTS . . .    0.00          0     0.0   319     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   381     CRMSSC  
     CHANGED ANGLES  . . . .    0.00          0     0.0   248     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   239     CRMSSC  
     LARGE SHIFTS/INSERTIONS    0.00          0     0.0    81     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   270     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   189     CRMSSC  
     CORE  . . . . . . . . .    0.00          0     0.0   378     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   21.03        464    50.3   923     CRMSALL 
     WELL ORDERED  . . . . .   20.84        424    55.5   764     CRMSALL 
     NO INTER CONTACTS . . .   22.27        328    50.7   647     CRMSALL 
     SHIFTED CHAIN . . . . .   20.58        308    51.4   599     CRMSALL 
     ALTERNATIVE PARENT  . .    0.00          0     0.0     0     CRMSALL 
     SECONDARY STRUCTURE . .   23.02        236    49.7   475     CRMSALL 
     LARGE SHIFTS/INSERTIONS   20.25         96    54.2   177     CRMSALL 
     SURFACE . . . . . . . .   18.76        276    50.5   546     CRMSALL 
     BURIED  . . . . . . . .   23.98        188    49.9   377     CRMSALL 
     CORE  . . . . . . . . .   21.23        368    49.3   746     CRMSALL 
 
 
RMS Details of loops: 
 
 GLOBAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1    14.11     15   100.0    15       3-ALTQAHCEACRADAP-17   
 CA  LOOP  2    15.51      5   100.0     5      38-VRDGI-42   
 CA  LOOP  3    38.24      4   100.0     4     115-EGRK-118  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1    13.94     60    80.0    75       3-ALTQAHCEACRADAP-17   
 MC  LOOP  2    15.62     20    83.3    24      38-VRDGI-42   
 MC  LOOP  3    37.79     16    84.2    19     115-EGRK-118  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1    13.94     60    56.6   106       3-ALTQAHCEACRADAP-17   
 ALL LOOP  2    15.62     20    52.6    38      38-VRDGI-42   
 ALL LOOP  3    37.79     16    48.5    33     115-EGRK-118  
 
 LOCAL SUPERPOSITION 
 RMS:          CRMSCA     NP     PP     TN        LOOPS 
 CA  LOOP  1     5.67     15   100.0    15       3-ALTQAHCEACRADAP-17   
 CA  LOOP  2     1.53      5   100.0     5      38-VRDGI-42   
 CA  LOOP  3     1.54      4   100.0     4     115-EGRK-118  
 RMS:          CRMSMC     NP     PP     TN        LOOPS 
 MC  LOOP  1     5.67     60    80.0    75       3-ALTQAHCEACRADAP-17   
 MC  LOOP  2     2.02     20    83.3    24      38-VRDGI-42   
 MC  LOOP  3     2.31     16    84.2    19     115-EGRK-118  
 RMS:          CRMSALL    NP     PP     TN        LOOPS 
 ALL LOOP  1     5.67     60    56.6   106       3-ALTQAHCEACRADAP-17   
 ALL LOOP  2     2.02     20    52.6    38      38-VRDGI-42   
 ALL LOOP  3     2.31     16    48.5    33     115-EGRK-118  
 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.330      1.000       0.500    116   100.0   116     ERRCA  
     WELL ORDERED  . . . . .   17.351      1.000       0.500    105   100.0   105     ERRCA  
     NO INTER CONTACTS . . .   18.210      1.000       0.500     82   100.0    82     ERRCA  
     SHIFTED CHAIN . . . . .   16.998      1.000       0.500     77   100.0    77     ERRCA  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRCA  
     SECONDARY STRUCTURE . .   19.543      1.000       0.500     59   100.0    59     ERRCA  
     LARGE SHIFTS/INSERTIONS   18.086      1.000       0.500     24   100.0    24     ERRCA  
     SURFACE . . . . . . . .   15.279      1.000       0.500     69   100.0    69     ERRCA  
     BURIED  . . . . . . . .   20.343      1.000       0.500     47   100.0    47     ERRCA  
     CORE  . . . . . . . . .   17.133      1.000       0.500     92   100.0    92     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.323      1.000       0.500    464    81.0   573     ERRMC  
     WELL ORDERED  . . . . .   17.423      1.000       0.500    424    81.5   520     ERRMC  
     NO INTER CONTACTS . . .   18.262      1.000       0.500    328    80.6   407     ERRMC  
     SHIFTED CHAIN . . . . .   16.955      1.000       0.500    308    81.1   380     ERRMC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRMC  
     SECONDARY STRUCTURE . .   19.551      1.000       0.500    236    80.5   293     ERRMC  
     LARGE SHIFTS/INSERTIONS   17.913      1.000       0.500     96    81.4   118     ERRMC  
     SURFACE . . . . . . . .   15.243      1.000       0.500    276    80.9   341     ERRMC  
     BURIED  . . . . . . . .   20.375      1.000       0.500    188    81.0   232     ERRMC  
     CORE  . . . . . . . . .   17.169      1.000       0.500    368    80.9   455     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   459     ERRSC  
     WELL ORDERED  . . . . .    0.000      0.000       0.000      0     0.0   340     ERRSC  
     NO INTER CONTACTS . . .    0.000      0.000       0.000      0     0.0   319     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   381     ERRSC  
     CHANGED ANGLES  . . . .    0.000      0.000       0.000      0     0.0   248     ERRSC  
     SHIFTED CHAIN . . . . .    0.000      0.000       0.000      0     0.0   291     ERRSC  
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   239     ERRSC  
     LARGE SHIFTS/INSERTIONS    0.000      0.000       0.000      0     0.0    81     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   270     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   189     ERRSC  
     CORE  . . . . . . . . .    0.000      0.000       0.000      0     0.0   378     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   17.323      1.000       0.500    464    50.3   923     ERRALL 
     WELL ORDERED  . . . . .   17.423      1.000       0.500    424    55.5   764     ERRALL 
     NO INTER CONTACTS . . .   18.262      1.000       0.500    328    50.7   647     ERRALL 
     SHIFTED CHAIN . . . . .   16.955      1.000       0.500    308    51.4   599     ERRALL 
     ALTERNATIVE PARENT  . .    0.000      0.000       0.000      0     0.0     0     ERRALL 
     SECONDARY STRUCTURE . .   19.551      1.000       0.500    236    49.7   475     ERRALL 
     LARGE SHIFTS/INSERTIONS   17.913      1.000       0.500     96    54.2   177     ERRALL 
     SURFACE . . . . . . . .   15.243      1.000       0.500    276    50.5   546     ERRALL 
     BURIED  . . . . . . . .   20.375      1.000       0.500    188    49.9   377     ERRALL 
     CORE  . . . . . . . . .   17.169      1.000       0.500    368    49.3   746     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         3         6        12        18        35     116     116   DISTCA 
CA  (P)      2.59      5.17     10.34     15.52     30.17             116   DISTCA 
CA  (RMS)    0.48      1.23      1.94      2.70      6.12                   DISTCA 
 
ALL (N)        10        25        45        73       132     464     923   DISTALL 
ALL (P)      1.08      2.71      4.88      7.91     14.30             923   DISTALL 
ALL (RMS)    0.66      1.31      1.93      2.73      5.67                   DISTALL 
 
CA RMS: P<->T (parent <-> target), and T<->M (target <-> model) calculated using 
        CA positions for which there exists an alignment with principal parent, 
        and for which does not (LARGE SHIFTS/INSERTIONS): 
              P<->T         T<->M         T<->M (LSI) 
CA  (N)          92            92            24          RMSLSI 
CA  (P)       79.31         79.31         20.69          RMSLSI 
CA  (RMS)      1.19         21.18         20.45          RMSLSI 
 
 
 
END of the results output 
