 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 105 , MODEL 105 , TARGET 211 
#          The number of residues possible to evaluate: 105 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   107     Q     H     C             1.00 
 SSP   108     A     H     C             1.00 
 SSP   109     F     H     C             1.00 
 SSP   110     E     H     C             1.00 
 SSP   111     K     H     C             1.00 
 SSP   112     S     H     C             1.00 
 SSP   113     G     C     C             1.00 
 SSP   114     K     C     C             1.00 
 SSP   115     K     C     C             1.00 
 SSP   116     T     E     C             1.00 
 SSP   117     P     E     C             1.00 
 SSP   118     R     H     C             1.00 
 SSP   119     K     H     H             1.00 
 SSP   120     D     H     H             1.00 
 SSP   121     L     H     H             1.00 
 SSP   122     A     H     H             1.00 
 SSP   123     K     H     H             1.00 
 SSP   124     K     C     H             1.00 
 SSP   125     G     C     H             1.00 
 SSP   126     Q     C     H             1.00 
 SSP   127     D     C     H             1.00 
 SSP   128     F     C     H             1.00 
 SSP   129     H     C     H             1.00 
 SSP   130     F     C     H             1.00 
 SSP   131     E     H     H             1.00 
 SSP   132     E     H     H             1.00 
 SSP   133     R     H     H             1.00 
 SSP   134     C     H     C             1.00 
 SSP   135     S     H     C             1.00 
 SSP   136     A     H     C             1.00 
 SSP   137     C     H     C             1.00 
 SSP   138     H     H     C             1.00 
 SSP   139     L     C     C             1.00 
 SSP   140     N     C     C             1.00 
 SSP   141     Y     C     C             1.00 
 SSP   142     E     C     C             1.00 
 SSP   143     G     C     C             1.00 
 SSP   144     S     C     C             1.00 
 SSP   145     P     C     C             1.00 
 SSP   146     W     C     C             1.00 
 SSP   147     K     C     C             1.00 
 SSP   148     G     C     C             1.00 
 SSP   149     A     C     C             1.00 
 SSP   150     K     C     C             1.00 
 SSP   151     A     C     C             1.00 
 SSP   152     P     C     C             1.00 
 SSP   153     Y     C     C             1.00 
 SSP   154     T     C     C             1.00 
 SSP   155     P     C     C             1.00 
 SSP   156     F     C     C             1.00 
 SSP   157     T     C     C             1.00 
 SSP   158     P     C     C             1.00 
 SSP   159     E     C     C             1.00 
 SSP   160     V     C     C             1.00 
 SSP   161     D     C     C             1.00 
 SSP   162     A     H     C             1.00 
 SSP   163     K     H     C             1.00 
 SSP   164     Y     H     C             1.00 
 SSP   165     T     C     C             1.00 
 SSP   166     F     C     C             1.00 
 SSP   167     K     C     C             1.00 
 SSP   168     F     H     H             1.00 
 SSP   169     D     H     H             1.00 
 SSP   170     E     H     H             1.00 
 SSP   171     M     H     H             1.00 
 SSP   172     V     C     H             1.00 
 SSP   173     K     C     H             1.00 
 SSP   174     E     C     C             1.00 
 SSP   175     V     C     C             1.00 
 SSP   176     K     C     C             1.00 
 SSP   177     A     C     C             1.00 
 SSP   178     M     C     C             1.00 
 SSP   179     H     C     H             1.00 
 SSP   180     E     C     H             1.00 
 SSP   181     H     C     H             1.00 
 SSP   182     Y     E     H             1.00 
 SSP   183     K     C     C             1.00 
 SSP   184     L     C     C             1.00 
 SSP   185     E     C     C             1.00 
 SSP   186     G     C     C             1.00 
 SSP   187     V     C     C             1.00 
 SSP   188     F     E     C             1.00 
 SSP   189     E     E     C             1.00 
 SSP   190     G     C     C             1.00 
 SSP   191     E     C     C             1.00 
 SSP   192     P     C     C             1.00 
 SSP   193     K     C     C             1.00 
 SSP   194     F     C     H             1.00 
 SSP   195     K     C     H             1.00 
 SSP   196     F     C     H             1.00 
 SSP   197     H     H     H             1.00 
 SSP   198     D     H     H             1.00 
 SSP   199     E     H     H             1.00 
 SSP   200     F     H     H             1.00 
 SSP   201     Q     H     H             1.00 
 SSP   202     A     H     H             1.00 
 SSP   203     S     C     H             1.00 
 SSP   204     A     C     H             1.00 
 SSP   205     K     E     H             1.00 
 SSP   206     P     C     H             1.00 
 SSP   207     A     C     H             1.00 
 SSP   208     K     C     C             1.00 
 SSP   209     K     C     C             1.00 
 SSP   210     G     C     C             1.00 
 SSP   211     K     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              61.9      54.5      0.0     71.2     49.8 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        54.6      40.2      0.0     66.7     49.8 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            8              50.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     105    100.0     61.9 
 
 BIN  0.00 - 1.00      1.00     105    100.0     61.9 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         105             105           105            211 
 ALL CONTACTS (< 8.0A)     427             389           427            964 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       427        246   57.61   63.24   25.52       0     0.00         389       964  |   1-9999 
 RES CONTACTS       290        236   81.38   87.41   40.83       0     0.00         270       578  |   1-4    
 RES CONTACTS        24          6   25.00   17.14    7.69       0     0.00          35        78  |   5-8    
 RES CONTACTS       113          4    3.54    4.76    1.30       0     0.00          84       308  |   9-9999 
 
 
 
# WARNING! TARGET 1654 atoms, MODEL 1658 atoms, 1654 common with TARGET 
           Number of atoms possible to evaluate: 853 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    75.76           48.6   208    49.5   420     ARMSMC  
     SECONDARY STRUCTURE . .    54.96           70.6    51    48.1   106     ARMSMC  
     SURFACE . . . . . . . .    76.30           47.9   144    51.4   280     ARMSMC  
     BURIED  . . . . . . . .    74.53           50.0    64    45.7   140     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    73.49           50.6    87    50.9   171     ARMSSC1 
     RELIABLE SIDE CHAINS  .    72.45           50.6    83    50.9   163     ARMSSC1 
     SECONDARY STRUCTURE . .    68.47           52.4    21    48.8    43     ARMSSC1 
     SURFACE . . . . . . . .    67.96           53.4    58    49.2   118     ARMSSC1 
     BURIED  . . . . . . . .    83.46           44.8    29    54.7    53     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    64.22           52.1    73    53.7   136     ARMSSC2 
     RELIABLE SIDE CHAINS  .    62.83           51.6    64    54.7   117     ARMSSC2 
     SECONDARY STRUCTURE . .    56.38           58.8    17    51.5    33     ARMSSC2 
     SURFACE . . . . . . . .    61.65           51.0    51    52.6    97     ARMSSC2 
     BURIED  . . . . . . . .    69.81           54.5    22    56.4    39     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    71.85           32.4    37    53.6    69     ARMSSC3 
     RELIABLE SIDE CHAINS  .    66.54           32.4    34    55.7    61     ARMSSC3 
     SECONDARY STRUCTURE . .    77.30           50.0    10    43.5    23     ARMSSC3 
     SURFACE . . . . . . . .    73.26           30.3    33    55.0    60     ARMSSC3 
     BURIED  . . . . . . . .    58.98           50.0     4    44.4     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    66.66           23.8    21    51.2    41     ARMSSC4 
     RELIABLE SIDE CHAINS  .    66.66           23.8    21    51.2    41     ARMSSC4 
     SECONDARY STRUCTURE . .    58.08           40.0     5    35.7    14     ARMSSC4 
     SURFACE . . . . . . . .    65.07           25.0    20    52.6    38     ARMSSC4 
     BURIED  . . . . . . . .    92.87            0.0     1    33.3     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  107 - 211  105  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    26    130 - 155      4.97    25.93 
  LCS LOCAL_SCORE:             21.95 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  107 - 211  105  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    164 - 176      1.94    30.44 
  LCS LOCAL_SCORE:              8.11 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  107 - 211  105  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    195 - 204      0.92    25.57 
  LCS LOCAL_SCORE:              5.42 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     107       Q     3    6   20       H        0   1   1   2   2   3   5   5   6   7   8   8  10  11  12  13  13  14  16  16  
 LCS     108       A     4    6   20       H        1   1   1   2   2   2   2   5   6   7   8   8  10  11  12  13  13  14  16  16  
 LCS     109       F     4    6   20       H        1   1   1   2   2   2   4   6   6   7   8   8  10  11  12  13  14  14  16  17  
 LCS     110       E     4    6   20       H        1   1   1   2   2   3   5   5   6   7   8   8  10  11  12  13  15  16  18  19  
 LCS     111       K     4    8   20       H        1   1   1   2   3   4   5   5   6   7   7   7   8  10  12  13  14  15  17  18  
 LCS     112       S     5    8   20       H        1   1   2   2   3   4   5   5   6   7   7   7   8  10  10  13  14  14  16  18  
 LCS     113       G     5    8   25       C        1   1   2   2   3   4   5   5   6   7   8   9  12  14  16  17  18  20  21  22  
 LCS     114       K     5    8   25       C        1   1   2   2   3   4   5   5   6   7   8   9  13  14  16  18  19  20  21  23  
 LCS     115       K     5    8   25       C        1   1   2   2   3   5   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     116       T     5    8   25       E        1   1   2   3   3   5   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     117       P     4    9   25       E        1   1   1   2   3   5   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     118       R     8    9   25       H        3   3   3   3   3   4   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     119       K     8    9   25       H        3   3   3   3   3   5   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     120       D     8    9   25       H        3   3   3   3   3   4   7   8   9  10  13  14  15  16  16  18  19  20  21  23  
 LCS     121       L     8    9   25       H        3   3   3   3   3   4   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     122       A     8    9   25       H        3   3   3   3   3   5   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     123       K     8    9   25       H        3   3   3   3   3   5   7   8   9  10  11  14  15  16  16  18  19  20  21  23  
 LCS     124       K     8    9   25       C        3   3   3   3   3   5   7   8   9  10  11  14  15  16  16  18  19  20  21  23  
 LCS     125       G     8    9   25       C        3   3   3   3   3   5   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     126       Q     3    9   25       C        1   1   1   2   3   5   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     127       D     4    4   25       C        1   1   1   2   3   4   5   6   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     128       F     4    4   25       C        1   1   1   1   2   3   5   5   6   8   9   9  12  12  14  15  18  20  21  23  
 LCS     129       H     4   10   25       C        1   1   1   3   4   5   5   6   7   8  10  11  12  14  15  17  18  20  21  23  
 LCS     130       F     5   10   26       C        1   1   2   3   4   4   6   7   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     131       E     5   10   26       H        1   1   2   3   4   5   5   6   7   7   9  11  12  14  15  16  18  20  21  23  
 LCS     132       E     7   10   26       H        1   2   3   3   4   5   5   6   7   7   9  11  12  14  15  16  18  19  21  23  
 LCS     133       R     7   10   26       H        1   2   3   3   4   5   6   7   9  11  13  14  15  16  16  18  19  20  21  23  
 LCS     134       C     7   10   26       H        2   2   3   3   4   5   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     135       S     7   10   26       H        2   2   3   3   4   5   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     136       A     7   10   26       H        2   2   3   3   4   5   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     137       C     7   10   26       H        2   2   3   3   4   5   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     138       H     7   10   26       H        2   2   3   3   4   5   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     139       L     7   10   26       C        2   3   3   3   4   4   5   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     140       N     7    9   26       C        2   3   3   3   3   4   4   6   7   7   9   9  10  11  14  16  19  20  21  23  
 LCS     141       Y     7    9   26       C        2   3   3   3   3   4   4   5   7   7   9   9  10  11  12  13  15  17  19  22  
 LCS     142       E     7    9   26       C        2   3   3   3   3   4   4   5   7   7   9   9  10  11  12  13  16  18  20  22  
 LCS     143       G     7    9   26       C        2   3   3   3   3   4   5   6   7   7   9   9  12  13  16  18  19  20  21  23  
 LCS     144       S     7    9   26       C        2   3   3   3   3   4   6   7   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     145       P     7    9   26       C        2   3   3   3   3   4   7   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     146       W     4    9   26       C        1   1   2   3   3   4   7   8   9  10  11  12  13  16  16  18  19  20  21  23  
 LCS     147       K     4    5   26       C        1   1   1   2   3   4   5   6   7   9  10  11  12  12  14  14  16  18  20  22  
 LCS     148       G     4    5   26       C        1   1   1   2   2   3   5   6   7   7   9   9  10  11  13  14  14  16  17  19  
 LCS     149       A     4    5   26       C        1   1   1   2   2   3   5   5   7   8   9   9  11  12  13  14  15  17  18  20  
 LCS     150       K     4    5   26       C        1   1   1   2   3   4   5   6   7   8   9   9  10  11  12  13  15  16  18  19  
 LCS     151       A     4    5   26       C        1   1   1   2   2   2   3   4   5   5   5   6  10  11  12  13  13  13  15  18  
 LCS     152       P     4    5   26       C        1   1   1   2   2   2   3   4   6   7   9   9  10  11  12  13  13  13  14  16  
 LCS     153       Y     6    6   26       C        1   1   2   2   2   3   4   5   6   7   9   9  10  11  12  13  13  13  14  16  
 LCS     154       T     6    6   26       C        1   1   2   2   2   3   4   6   7   7   8   9  10  11  12  13  13  14  15  16  
 LCS     155       P     6    6   26       C        1   1   2   2   3   4   5   6   7   7   9   9  10  11  12  13  13  14  15  16  
 LCS     156       F     6    6   17       C        0   1   2   2   2   3   4   4   5   7   8   8  10  10  12  13  14  16  17  18  
 LCS     157       T     6    6   17       C        1   1   2   2   2   2   3   4   5   5   7   8  10  10  12  13  15  16  18  20  
 LCS     158       P     6    6   17       C        1   1   2   2   2   2   3   4   5   7   8   9  10  11  13  14  16  18  20  22  
 LCS     159       E     4    7   18       C        1   1   2   2   2   3   3   4   6   7   8   9  10  11  13  14  16  18  19  22  
 LCS     160       V     4    7   19       C        1   1   2   2   3   4   5   6   7   7   8   9  10  11  12  15  16  18  20  22  
 LCS     161       D     3    7   20       C        1   1   2   2   2   5   5   6   7   7   8  10  11  14  16  18  19  20  21  23  
 LCS     162       A     3    7   20       H        1   1   3   3   4   5   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     163       K     3   12   20       H        1   1   2   2   3   5   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     164       Y     4   13   20       H        2   3   4   4   5   5   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     165       T     4   13   20       C        1   4   4   4   5   5   7   8   9  10  11  14  15  16  16  18  19  20  21  23  
 LCS     166       F     9   13   20       C        1   2   3   4   5   5   6   6   9  10  11  12  13  14  16  18  19  20  21  23  
 LCS     167       K     9   13   20       C        2   4   4   4   5   5   6   6   7   7   8   8  10  12  13  14  16  18  19  21  
 LCS     168       F     9   13   20       H        2   4   4   4   5   5   6   6   7   7   8   8   8   9   9  10  11  12  13  15  
 LCS     169       D     9   13   20       H        2   4   4   4   5   5   6   6   7   7   8   8   8   9   9  10  11  12  17  19  
 LCS     170       E     9   13   20       H        2   4   4   4   5   5   7   8   9  10  11  12  13  14  16  17  18  20  21  23  
 LCS     171       M     9   13   20       H        2   4   4   4   5   5   6   6   7   7   8   8   9  12  16  18  19  20  21  23  
 LCS     172       V     9   13   20       C        2   4   4   4   5   5   6   6   7   7   8   8   8   9   9  10  11  12  13  15  
 LCS     173       K     9   13   20       C        2   4   4   4   5   5   6   6   7   7   8   8   9  14  16  18  19  20  21  23  
 LCS     174       E     9   13   20       C        2   4   4   4   5   5   6   6   7   9  11  14  15  16  16  18  19  20  21  23  
 LCS     175       V     3   13   20       C        1   1   3   4   5   5   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     176       K     3   13   20       C        0   1   1   3   5   5   6   6   8   9  12  13  14  15  16  17  18  19  21  22  
 LCS     177       A     3    5   20       C        1   1   1   1   1   2   3   5   7   7   9  13  14  15  16  17  19  20  21  23  
 LCS     178       M     3    5   20       C        1   1   1   1   1   5   5   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     179       H     3    5   20       C        1   2   3   3   4   5   5   6   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     180       E     3    5   20       C        0   1   1   2   3   5   6   8   9  12  13  14  15  16  16  18  19  20  21  23  
 LCS     181       H     3    4   18       C        0   1   1   1   1   2   3   5   7   9  10  14  15  16  16  18  19  20  21  23  
 LCS     182       Y     3    5   17       E        1   1   1   2   2   2   3   5   6   7   8   9  10  11  13  15  17  18  21  22  
 LCS     183       K     4    5   17       C        1   1   1   2   2   2   3   4   5   6   8   9  10  11  12  13  15  16  18  22  
 LCS     184       L     4    6   17       C        1   1   2   2   2   2   3   4   5   6   6   7   8   9  10  11  12  13  14  15  
 LCS     185       E     4    7   21       C        1   1   2   2   3   3   3   4   5   6   6   7   8   9  10  11  12  13  13  14  
 LCS     186       G     4    7   23       C        1   1   1   2   3   3   3   4   5   6   6   7   8   9  10  11  12  13  13  14  
 LCS     187       V     4    7   24       C        1   1   2   2   3   3   6   6   7   8   9  10  10  10  10  11  12  13  13  14  
 LCS     188       F     4    7   24       E        1   1   2   2   3   5   6   7   8   8   9  10  10  10  10  11  12  13  13  14  
 LCS     189       E     4    7   24       E        1   1   2   2   3   3   4   7   7   8   9  10  10  10  10  11  12  13  13  14  
 LCS     190       G     4    7   24       C        1   1   1   2   3   3   6   7   8   8   9  10  10  10  10  11  12  13  13  15  
 LCS     191       E     4    7   24       C        1   1   1   2   3   3   3   4   6   8   9  10  10  10  12  13  14  16  17  18  
 LCS     192       P     4    7   24       C        1   1   1   2   4   5   6   7   8   8   9  10  10  11  12  13  14  16  17  18  
 LCS     193       K     4   12   24       C        1   1   1   3   4   5   6   7   8   8   9  10  12  12  14  15  17  18  19  22  
 LCS     194       F     4   12   24       C        1   1   4   5   5   5   5   5   7   8  10  11  12  13  14  15  17  18  21  23  
 LCS     195       K    10   12   24       C        1   1   3   5   5   5   6   7   8   8   9  10  11  12  14  15  17  18  18  20  
 LCS     196       F    10   12   24       C        4   4   4   5   5   5   6   7   8   8   9  10  11  12  14  15  17  18  18  19  
 LCS     197       H    10   12   24       H        4   4   4   5   5   5   6   7   8   9  11  12  12  13  14  17  18  20  21  23  
 LCS     198       D    10   12   24       H        4   4   4   5   5   5   6   7   8   8   9  10  10  11  13  15  18  19  21  23  
 LCS     199       E    10   12   24       H        4   4   4   5   5   5   6   7   8   8   9  10  10  11  12  13  14  16  17  18  
 LCS     200       F    10   12   24       H        4   4   4   5   5   5   6   7   8   8   9  10  10  11  12  13  13  15  17  18  
 LCS     201       Q    10   12   24       H        4   4   4   5   5   5   6   7   8   8   9  10  10  11  12  13  13  15  17  18  
 LCS     202       A    10   12   24       H        4   4   4   5   5   5   6   7   8   8   9  10  10  11  12  13  13  14  16  18  
 LCS     203       S    10   12   24       C        4   4   4   5   5   5   6   7   7   8   9  10  10  11  12  13  13  14  16  16  
 LCS     204       A    10   12   24       C        4   4   4   5   5   5   6   7   8   8   9  10  10  10  12  13  13  14  16  16  
 LCS     205       K     3   12   24       E        1   1   1   1   3   5   5   6   8   8   9  10  10  11  12  13  13  14  16  16  
 LCS     206       P     3    4   24       C        1   1   1   2   3   4   5   6   8   8   9  10  10  10  12  13  13  14  16  16  
 LCS     207       A     3    4   24       C        1   1   1   1   1   3   3   6   8   8   9  10  10  10  10  11  12  13  13  14  
 LCS     208       K     3    4   24       C        1   1   1   1   1   2   3   5   8   8   9  10  10  10  10  11  12  13  13  13  
 LCS     209       K     3    4   24       C        1   1   1   1   1   2   2   2   3   3   6   7   8   9  10  11  12  13  13  13  
 LCS     210       G     3    4   24       C        1   1   1   1   1   2   2   2   3   3   5   6   7   8  10  11  12  13  13  13  
 LCS     211       K     3    4   22       C        0   1   1   1   1   2   2   2   3   4   5   6   7   9  10  11  12  13  13  13  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.34 
 
 NUMBER_OF_CA_Tg:  211      NUMBER_OF_CA_Pr:  105      PERCENT_OF_CA:  49.76  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9       9      10      11      12      12      15      18      21      26      28      30      33      34      35      39      41      44      46      50  
 GDT PERCENT_OF_CA_Pr    8.57    8.57    9.52   10.48   11.43   11.43   14.29   17.14   20.00   24.76   26.67   28.57   31.43   32.38   33.33   37.14   39.05   41.90   43.81   47.62 
 GDT PERCENT_OF_CA_Tg    4.27    4.27    4.74    5.21    5.69    5.69    7.11    8.53    9.95   12.32   13.27   14.22   15.64   16.11   16.59   18.48   19.43   20.85   21.80   23.70 
 GDT FRAGMENT: Beg-End 196-204 196-204 164-174 194-204 164-176 164-175 115-170 116-180 116-180 115-180 115-180 115-180 115-181 115-181 115-181 114-181 114-181 113-197 113-197 114-198 
 GDT RMS_LOCAL           0.24    0.24    0.87    1.06    1.76    1.64    2.79    3.20    3.51    3.85    4.03    4.31    4.59    4.73    4.88    5.54    5.79    6.03    6.27    6.80 
 GDT RMS_ALL_CA         24.95   24.95   31.64   25.54   29.99   30.85   16.12   15.53   15.68   15.47   15.50   15.45   15.41   15.41   15.42   15.28   15.31   15.32   15.29   15.34 
 
 
 TEST (CA)  RMS =  14.86               (Number of atoms:  105) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   14.86        105    49.8   211     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1415                            CRMSCA  
     SECONDARY STRUCTURE . .   11.76         26    49.1    53     CRMSCA  
     SURFACE . . . . . . . .   15.70         73    51.8   141     CRMSCA  
     BURIED  . . . . . . . .   12.72         32    45.7    70     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   14.85        518    50.0  1036     CRMSMC  
     SECONDARY STRUCTURE . .   11.83        130    49.4   263     CRMSMC  
     SURFACE . . . . . . . .   15.68        359    51.7   695     CRMSMC  
     BURIED  . . . . . . . .   12.77        159    46.6   341     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   15.60        433    53.5   810     CRMSSC  
     RELIABLE SIDE CHAINS  .   15.93        391    54.3   720     CRMSSC  
     SECONDARY STRUCTURE . .   13.07        105    50.2   209     CRMSSC  
     SURFACE . . . . . . . .   16.68        274    51.3   534     CRMSSC  
     BURIED  . . . . . . . .   13.54        159    57.6   276     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   15.23        853    51.6  1654     CRMSALL 
     SECONDARY STRUCTURE . .   12.43        209    49.6   421     CRMSALL 
     SURFACE . . . . . . . .   16.17        566    51.5  1098     CRMSALL 
     BURIED  . . . . . . . .   13.17        287    51.6   556     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.190      1.000       0.500    105    49.8   211     ERRCA  
     SECONDARY STRUCTURE . .   11.028      1.000       0.500     26    49.1    53     ERRCA  
     SURFACE . . . . . . . .   13.829      1.000       0.500     73    51.8   141     ERRCA  
     BURIED  . . . . . . . .   11.734      1.000       0.500     32    45.7    70     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.203      1.000       0.500    518    50.0  1036     ERRMC  
     SECONDARY STRUCTURE . .   11.098      1.000       0.500    130    49.4   263     ERRMC  
     SURFACE . . . . . . . .   13.834      1.000       0.500    359    51.7   695     ERRMC  
     BURIED  . . . . . . . .   11.777      1.000       0.500    159    46.6   341     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.166      1.000       0.500    433    53.5   810     ERRSC  
     RELIABLE SIDE CHAINS  .   14.527      1.000       0.500    391    54.3   720     ERRSC  
     SECONDARY STRUCTURE . .   12.248      1.000       0.500    105    50.2   209     ERRSC  
     SURFACE . . . . . . . .   15.133      1.000       0.500    274    51.3   534     ERRSC  
     BURIED  . . . . . . . .   12.500      1.000       0.500    159    57.6   276     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.670      1.000       0.500    853    51.6  1654     ERRALL 
     SECONDARY STRUCTURE . .   11.646      1.000       0.500    209    49.6   421     ERRALL 
     SURFACE . . . . . . . .   14.444      1.000       0.500    566    51.5  1098     ERRALL 
     BURIED  . . . . . . . .   12.145      1.000       0.500    287    51.6   556     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         1         7        40     105     211   DISTCA 
CA  (P)      0.00      0.47      0.47      3.32     18.96             211   DISTCA 
CA  (RMS)    0.00      1.67      1.67      4.11      6.93                   DISTCA 
 
ALL (N)         0         3         9        48       297     853    1654   DISTALL 
ALL (P)      0.00      0.18      0.54      2.90     17.96            1654   DISTALL 
ALL (RMS)    0.00      1.71      2.49      4.08      7.11                   DISTALL 
 
 
 
 
END of the results output 
