 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 0 0 , MODEL 0 , TARGET 27 
 
# WARNING! TARGET 117 atoms, MODEL 71 atoms, 30 common with TARGET 
           Number of atoms possible to evaluate: 30 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    56     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    48     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    54     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     0     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     0     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     0     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     0     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     0     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     0     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     0     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     0     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    4 - 33   30   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    24      4 - 27       4.82    10.83 
  LCS LOCAL_SCORE:             75.33 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    4 - 33   30   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16      7 - 22       1.91    12.28 
  LCS LOCAL_SCORE:             49.33 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    4 - 33   30   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12      7 - 18       0.80    13.11 
  LONGEST_CONTINUOUS_SEGMENT    12      8 - 19       0.96    12.61 
  LCS LOCAL_SCORE:             31.11 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       4       R     3   15   24       -        0  10  10  20  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS       5       E     4   15   24       -        6  13  30  40  43  50  56  60  60  60  66  66  73  73  73  76  76  76  76  80  
 LCS       6       G     4   15   24       -       10  10  13  20  30  36  46  50  60  60  63  66  73  73  73  76  76  76  76  80  
 LCS       7       V    12   16   24       -       10  26  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS       8       L    12   16   24       -       26  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS       9       K    12   16   24       -       26  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      10       K    12   16   24       -       26  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      11       L    12   16   24       -       26  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      12       R    12   16   24       -       26  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      13       A    12   16   24       -       26  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      14       V    12   16   24       -       26  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      15       E    12   16   24       -       26  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      16       N    12   16   24       -       13  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      17       E    12   16   24       -       16  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      18       L    12   16   24       -       16  33  40  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      19       H    12   16   24       -       10  20  33  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      20       Y     8   16   24       -       10  20  26  43  46  50  56  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      21       N     9   16   24       -       20  26  30  40  40  50  56  60  60  60  63  66  73  73  73  76  76  76  76  80  
 LCS      22       K     9   16   24       -       20  26  30  40  40  43  53  60  60  63  66  66  73  73  73  76  76  76  76  80  
 LCS      23       S     9   13   24       -       20  26  30  40  40  43  43  43  53  63  66  66  73  73  73  76  76  76  76  80  
 LCS      24       L     9   13   24       -       20  26  30  40  40  43  43  53  56  63  66  66  73  73  73  76  76  76  76  80  
 LCS      25       L     9   13   24       -       20  26  30  40  40  43  43  43  53  63  66  66  73  73  73  76  76  76  76  80  
 LCS      26       E     9   13   24       -       20  26  30  40  40  43  43  43  43  50  56  63  66  70  70  76  76  76  76  80  
 LCS      27       E     9   13   24       -       20  26  30  40  40  43  43  43  43  46  46  46  46  56  60  66  70  73  76  80  
 LCS      28       V     9   13   17       -       20  26  30  40  40  43  43  43  43  46  46  46  46  50  56  60  63  66  76  76  
 LCS      29       K     9   13   17       -       16  26  30  40  40  43  43  43  43  46  46  46  46  50  56  60  60  66  76  76  
 LCS      30       D     6   13   17       -       16  20  26  40  40  43  43  43  43  46  46  46  46  50  56  56  56  56  60  60  
 LCS      31       E     6   13   17       -       16  20  26  40  40  43  43  43  43  46  46  46  46  50  56  56  56  56  60  60  
 LCS      32       L     6   13   17       -       16  20  26  40  40  43  43  43  43  46  46  46  46  46  56  56  56  56  60  60  
 LCS      33       Q     6   13   17       -       16  20  23  33  40  43  43  43  43  46  46  46  46  46  56  56  56  56  60  60  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  31.11 
 
 NUMBER_OF_CA_Tg:   30      NUMBER_OF_CA_Pr:   30      PERCENT_OF_CA: 100.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       8      10      12      13      14      15      17      18      18      19      20      20      22      22      22      23      23      23      23      24  
 GDT PERCENT_OF_CA_Pr   26.67   33.33   40.00   43.33   46.67   50.00   56.67   60.00   60.00   63.33   66.67   66.67   73.33   73.33   73.33   76.67   76.67   76.67   76.67   80.00 
 GDT PERCENT_OF_CA_Tg   26.67   33.33   40.00   43.33   46.67   50.00   56.67   60.00   60.00   63.33   66.67   66.67   73.33   73.33   73.33   76.67   76.67   76.67   76.67   80.00 
 GDT FRAGMENT: Beg-End   8-15    8-18    7-18    7-19    7-20    7-21    4-21    4-22    4-22    4-25    4-25    4-24    4-25    4-25    4-25    4-26    4-26    4-26    4-26    4-27  
 GDT RMS_LOCAL           0.21    0.56    0.80    1.08    1.27    1.43    1.96    2.29    2.29    3.13    3.32    2.95    3.58    3.58    3.58    4.08    4.08    4.08    4.08    4.82 
 GDT RMS_ALL_CA         13.83   13.09   13.11   12.71   12.52   12.60   12.77   12.43   12.43   11.17   11.33   12.20   11.62   11.62   11.62   11.21   11.21   11.21   11.21   10.83 
 
 
 TEST (CA)  RMS =   9.50               (Number of atoms:   30) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    9.50         30   100.0    30     CRMSCA  
     CRN = ALL/NP  . . . . .    0.3167                            CRMSCA  
     SECONDARY STRUCTURE . .    7.84         24   100.0    24     CRMSCA  
     SURFACE . . . . . . . .    8.72         27   100.0    27     CRMSCA  
     BURIED  . . . . . . . .   14.77          3   100.0     3     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    9.50         30    25.6   117     CRMSMC  
     SECONDARY STRUCTURE . .    7.84         24    25.0    96     CRMSMC  
     SURFACE . . . . . . . .    8.72         27    25.0   108     CRMSMC  
     BURIED  . . . . . . . .   14.77          3    33.3     9     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0     0     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0     0     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0     0     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0     0     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0     0     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    9.50         30    25.6   117     CRMSALL 
     SECONDARY STRUCTURE . .    7.84         24    25.0    96     CRMSALL 
     SURFACE . . . . . . . .    8.72         27    25.0   108     CRMSALL 
     BURIED  . . . . . . . .   14.77          3    33.3     9     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.226      0.732       0.366     30   100.0    30     ERRCA  
     SECONDARY STRUCTURE . .    5.967      0.705       0.352     24   100.0    24     ERRCA  
     SURFACE . . . . . . . .    6.621      0.719       0.360     27   100.0    27     ERRCA  
     BURIED  . . . . . . . .   12.672      0.843       0.421      3   100.0     3     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.226      0.732       0.366     30    25.6   117     ERRMC  
     SECONDARY STRUCTURE . .    5.967      0.705       0.352     24    25.0    96     ERRMC  
     SURFACE . . . . . . . .    6.621      0.719       0.360     27    25.0   108     ERRMC  
     BURIED  . . . . . . . .   12.672      0.843       0.421      3    33.3     9     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0     0     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.226      0.732       0.366     30    25.6   117     ERRALL 
     SECONDARY STRUCTURE . .    5.967      0.705       0.352     24    25.0    96     ERRALL 
     SURFACE . . . . . . . .    6.621      0.719       0.360     27    25.0   108     ERRALL 
     BURIED  . . . . . . . .   12.672      0.843       0.421      3    33.3     9     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         2         6        23      30      30   DISTCA 
CA  (P)      0.00      0.00      6.67     20.00     76.67              30   DISTCA 
CA  (RMS)    0.00      0.00      2.76      3.60      6.34                   DISTCA 
 
ALL (N)         0         0         2         6        23      30     117   DISTALL 
ALL (P)      0.00      0.00      1.71      5.13     19.66             117   DISTALL 
ALL (RMS)    0.00      0.00      2.76      3.60      6.34                   DISTALL 
 
 
 
 
END of the results output 
