 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 114 , MODEL 114 , TARGET 200 
#          The number of residues possible to evaluate: 114 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    84     T     C     C             1.00 
 SSP    85     R     C     C             1.00 
 SSP    86     L     C     C             1.00 
 SSP    87     G     C     C             1.00 
 SSP    88     L     H     C             1.00 
 SSP    89     E     H     C             1.00 
 SSP    90     F     H     C             1.00 
 SSP    91     F     H     C             1.00 
 SSP  BREAK 
 SSP    96     V     H     H             1.00 
 SSP    97     P     H     H             1.00 
 SSP    98     L     H     H             1.00 
 SSP    99     A     H     H             1.00 
 SSP   100     R     H     H             1.00 
 SSP   101     A     H     H             1.00 
 SSP   102     F     H     H             1.00 
 SSP   103     L     C     H             1.00 
 SSP   104     G     C     H             1.00 
 SSP   105     Q     C     H             1.00 
 SSP   106     V     E     H             1.00 
 SSP   107     L     E     H             1.00 
 SSP   108     V     E     H             1.00 
 SSP   109     R     E     H             1.00 
 SSP   110     R     E     H             1.00 
 SSP   111     L     C     H             1.00 
 SSP   112     P     C     H             1.00 
 SSP   113     N     C     H             1.00 
 SSP   114     G     C     H             1.00 
 SSP   115     T     C     H             1.00 
 SSP   116     E     E     H             1.00 
 SSP   117     L     E     H             1.00 
 SSP   118     R     E     E             1.00 
 SSP   119     G     E     E             1.00 
 SSP   120     R     E     E             1.00 
 SSP   121     I     E     E             1.00 
 SSP   122     V     E     E             1.00 
 SSP   123     E     E     E             1.00 
 SSP   124     T     E     E             1.00 
 SSP   125     E     E     H             1.00 
 SSP   126     A     E     H             1.00 
 SSP   127     Y     E     H             1.00 
 SSP   128     L     C     H             1.00 
 SSP   129     G     C     C             1.00 
 SSP   130     P     C     C             1.00 
 SSP   131     E     C     C             1.00 
 SSP  BREAK 
 SSP   150     F     H     C             1.00 
 SSP   151     M     C     C             1.00 
 SSP   152     K     C     C             1.00 
 SSP   153     P     C     C             1.00 
 SSP   154     G     C     C             1.00 
 SSP   155     T     E     C             1.00 
 SSP   156     L     E     E             1.00 
 SSP   157     Y     E     E             1.00 
 SSP   158     V     E     E             1.00 
 SSP   159     Y     E     E             1.00 
 SSP   160     I     E     E             1.00 
 SSP   161     I     E     E             1.00 
 SSP   162     Y     C     E             1.00 
 SSP   163     G     C     C             1.00 
 SSP   164     M     C     C             1.00 
 SSP   165     Y     E     E             1.00 
 SSP   166     F     E     E             1.00 
 SSP   167     C     E     E             1.00 
 SSP   168     M     E     E             1.00 
 SSP   169     N     E     E             1.00 
 SSP   170     I     E     E             1.00 
 SSP   171     S     E     E             1.00 
 SSP   172     S     C     C             1.00 
 SSP   173     Q     E     C             1.00 
 SSP   174     G     C     C             1.00 
 SSP   175     D     C     C             1.00 
 SSP   176     G     C     E             1.00 
 SSP   177     A     C     E             1.00 
 SSP   178     C     E     E             1.00 
 SSP   179     V     E     E             1.00 
 SSP   180     L     E     E             1.00 
 SSP   181     L     E     E             1.00 
 SSP   182     R     E     E             1.00 
 SSP   183     A     E     E             1.00 
 SSP   184     L     E     H             1.00 
 SSP   185     E     E     H             1.00 
 SSP   186     P     E     H             1.00 
 SSP   187     L     E     H             1.00 
 SSP   188     E     E     H             1.00 
 SSP   189     G     C     H             1.00 
 SSP   190     L     H     H             1.00 
 SSP   191     E     H     H             1.00 
 SSP   192     T     H     C             1.00 
 SSP   193     M     H     C             1.00 
 SSP   194     R     H     C             1.00 
 SSP  BREAK 
 SSP   198     S     C     C             1.00 
 SSP   199     T     C     C             1.00 
 SSP  BREAK 
 SSP   208     V     C     C             1.00 
 SSP   209     L     C     C             1.00 
 SSP   210     K     C     C             1.00 
 SSP   211     D     C     C             1.00 
 SSP   212     R     H     E             1.00 
 SSP   213     E     H     E             1.00 
 SSP   214     L     H     E             1.00 
 SSP   215     C     H     E             1.00 
 SSP   216     S     E     E             1.00 
 SSP   217     G     C     C             1.00 
 SSP   218     P     H     C             1.00 
 SSP   219     S     H     C             1.00 
 SSP   220     K     H     H             1.00 
 SSP   221     L     H     H             1.00 
 SSP   222     C     H     H             1.00 
 SSP   223     Q     H     H             1.00 
 SSP   224     A     H     H             1.00 
 SSP   225     L     C     H             1.00 
 SSP   226     A     C     H             1.00 
 SSP   227     I     C     H             1.00 
 SSP   228     N     C     H             1.00 
 SSP   229     K     H     H             1.00 
 SSP   230     S     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              57.0      50.0     61.4     57.5     57.0 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        57.8      33.4     74.2     58.1     57.0 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           12              59.4              23.9 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     114    100.0     57.0 
 
 BIN  0.00 - 1.00      1.00     114    100.0     57.0 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         114             114           122            200 
 ALL CONTACTS (< 8.0A)     530             506           575           1052 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       530        238   44.91   47.04   22.62       0     0.00         506      1052  |   1-9999 
 RES CONTACTS       297        224   75.42   87.84   46.19       0     0.00         255       485  |   1-4    
 RES CONTACTS        22          4   18.18   11.11    4.94       0     0.00          36        81  |   5-8    
 RES CONTACTS       211         10    4.74    4.65    2.06       0     0.00         215       486  |   9-9999 
 
 
 
# WARNING! TARGET 1546 atoms, MODEL 1358 atoms, 1225 common with TARGET 
           Number of atoms possible to evaluate: 559 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    88.66           42.2   204    51.6   395     ARMSMC  
     SECONDARY STRUCTURE . .    76.44           48.7   115    68.9   167     ARMSMC  
     SURFACE . . . . . . . .    91.65           38.6    83    44.4   187     ARMSMC  
     BURIED  . . . . . . . .    86.55           44.6   121    58.2   208     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   143     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   128     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    65     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    73     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    45     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    53     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    34     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    25     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    16     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     8     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   84 - 91   8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     84 - 91       3.40     3.40 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   96 - 131  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21    107 - 127      4.68     8.75 
  LCS LOCAL_SCORE:             51.62 
 
 FRAGMENT  3  150 - 194  45   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    29    150 - 178      4.86    12.20 
  LONGEST_CONTINUOUS_SEGMENT    29    151 - 179      4.87    11.48 
  LONGEST_CONTINUOUS_SEGMENT    29    152 - 180      4.94    10.83 
  LCS LOCAL_SCORE:             56.89 
 
 FRAGMENT  4  198 - 230  25   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    208 - 227      4.88     7.56 
  LONGEST_CONTINUOUS_SEGMENT    20    211 - 230      4.86     7.98 
  LCS LOCAL_SCORE:             84.80 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   84 - 91   8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     84 - 88       1.32     5.73 
  LCS LOCAL_SCORE:             56.25 
 
 FRAGMENT  2   96 - 131  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     96 - 106      1.42    11.91 
  LCS LOCAL_SCORE:             20.68 
 
 FRAGMENT  3  150 - 194  45   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    165 - 176      1.93    16.92 
  LCS LOCAL_SCORE:             21.14 
 
 FRAGMENT  4  198 - 230  25   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    216 - 226      1.90    10.29 
  LCS LOCAL_SCORE:             28.16 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   84 - 91   8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4     84 - 87       0.79     6.73 
  LCS LOCAL_SCORE:             43.75 
 
 FRAGMENT  2   96 - 131  36   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     96 - 105      1.00    12.83 
  LCS LOCAL_SCORE:             14.89 
 
 FRAGMENT  3  150 - 194  45   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    154 - 160      0.65    20.44 
  LONGEST_CONTINUOUS_SEGMENT     7    177 - 183      0.95    15.27 
  LCS LOCAL_SCORE:             11.60 
 
 FRAGMENT  4  198 - 230  25   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    219 - 226      0.31    11.66 
  LCS LOCAL_SCORE:             18.08 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      84       T     4    5    8       C        0   1   2   2   2   3   4   5   7   8   9  10  11  12  13  14  15  16  16  18  
 LCS      85       R     4    5    8       C        1   1   2   2   2   2   4   5   7   8   9  10  11  12  13  14  15  16  16  18  
 LCS      86       L     4    5    8       C        1   1   2   3   3   4   6   7   9   9  10  10  11  12  13  14  15  16  16  18  
 LCS      87       G     4    5    8       C        1   1   2   2   3   4   5   7   9   9  10  10  12  14  16  18  20  22  25  26  
 LCS      88       L     3    5    8       H        1   1   1   2   2   4   5   6   9   9  10  13  14  17  19  20  22  24  27  29  
 LCS      89       E     3    4    8       H        1   1   1   2   3   4   5   6   9   9  10  13  14  17  19  20  22  26  27  29  
 LCS      90       F     3    4    8       H        1   1   1   1   2   4   5   6   7   8  11  13  15  17  19  20  25  28  29  31  
 LCS      91       F     3    3    8       H        0   1   1   1   1   2   2   2   5   8  11  13  13  16  19  20  24  28  29  31  
 LCS      92       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      93       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      94       P     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      95       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      96       V    10   11   16       H        3   4   4   5   6   6   7   8  11  13  15  18  20  21  23  24  26  28  29  31  
 LCS      97       P    10   11   16       H        3   4   4   6   6   6   7   8  11  13  15  18  20  21  23  24  26  28  29  31  
 LCS      98       L    10   11   16       H        3   4   4   5   6   6   7   8  11  13  15  18  20  21  23  24  26  28  29  31  
 LCS      99       A    10   11   16       H        3   4   4   5   6   6   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     100       R    10   11   16       H        3   4   5   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     101       A    10   11   16       H        3   4   4   5   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     102       F    10   11   16       H        3   4   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     103       L    10   11   16       C        2   4   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     104       G    10   11   16       C        1   2   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     105       Q    10   11   16       C        1   3   4   6   6   8   9  10  11  13  15  18  20  21  23  24  26  28  29  31  
 LCS     106       V     3   11   16       E        1   1   1   3   6   6   7   8  11  12  14  16  19  21  23  24  26  28  29  31  
 LCS     107       L     3    3   21       E        1   2   3   4   5   6   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     108       V     3    3   21       E        1   2   3   4   5   5   7   8  11  13  15  18  20  21  23  24  26  28  29  31  
 LCS     109       R     3    3   21       E        1   2   3   3   5   5   6   7   9  12  13  17  20  21  23  24  26  28  29  31  
 LCS     110       R     3    5   21       E        1   1   1   1   2   2   3   4   5   7   8  12  17  20  23  24  26  28  29  31  
 LCS     111       L     4    6   21       C        1   2   2   2   2   3   4   4   4   6   8   9  10  11  19  24  26  28  29  31  
 LCS     112       P     4    6   21       C        1   2   2   2   2   3   4   4   4   5   8   9  10  10  11  19  23  26  29  31  
 LCS     113       N     4    6   21       C        1   2   2   2   2   3   4   4   4   6   7   9  10  10  12  14  24  28  29  31  
 LCS     114       G     4    6   21       C        1   2   2   2   2   3   3   3   4   5   7   9  14  17  22  24  26  27  29  31  
 LCS     115       T     4    6   21       C        1   2   2   2   2   3   4   5   7   8  13  17  20  21  23  24  26  28  29  31  
 LCS     116       E     4    8   21       E        1   2   2   2   3   6   7  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     117       L     4    8   21       E        1   2   2   4   5   7   8  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     118       R     4    8   21       E        1   2   2   4   5   7   8  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     119       G     4    8   21       E        1   2   2   2   3   4   7   8  11  13  15  18  20  21  23  24  26  28  29  31  
 LCS     120       R     4    8   21       E        1   2   2   3   3   4   7   8  11  13  15  17  20  21  23  24  26  28  29  31  
 LCS     121       I     4    8   21       E        1   2   2   3   4   6   7  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     122       V     4    8   21       E        2   2   2   4   5   7   8  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     123       E     4    8   21       E        2   2   3   5   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     124       T     4    7   21       E        2   2   3   3   4   5   6   9  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     125       E     4    7   21       E        2   2   3   3   4   4   7   9  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     126       A     3    5   21       E        1   2   3   3   4   5   6   8  11  12  15  18  20  21  23  24  26  28  29  31  
 LCS     127       Y     3    4   21       E        1   1   1   1   2   3   5   6   9  10  10  13  16  19  23  24  26  28  29  31  
 LCS     128       L     3    4   17       C        1   1   1   2   2   3   4   5   5   5   7  11  13  16  17  19  22  23  27  30  
 LCS     129       G     3    4   15       C        1   1   1   2   2   3   4   5   5   5   7   7  11  15  17  18  20  23  25  26  
 LCS     130       P     3    4   12       C        1   1   1   2   2   2   3   3   3   5   7   7   8  10  14  14  16  17  19  21  
 LCS     131       E     3    4    8       C        1   1   1   2   2   2   2   3   3   5   5   6   8  10  14  16  20  22  25  30  
 LCS     132       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     133       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     134       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     135       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     136       H     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     137       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     138       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     139       G     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     140       G     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     141       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     142       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     143       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     144       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     145       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     146       N     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     147       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     148       G     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     149       M     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     150       F     4    4   29       H        1   2   2   2   3   4   6   7   8   9  10  10  11  13  16  18  20  22  23  25  
 LCS     151       M     4    4   29       C        1   2   2   2   3   4   6   7   8   9  10  11  13  14  16  18  20  22  23  25  
 LCS     152       K     4    5   29       C        1   2   2   2   3   4   6   7   8   9  11  13  13  14  16  18  20  22  25  26  
 LCS     153       P     4    9   29       C        1   2   2   2   3   4   6   7   8   9  11  13  14  17  19  20  23  26  29  31  
 LCS     154       G     7   10   29       C        3   3   3   4   4   5   5   7   9   9  10  13  13  16  17  19  22  23  26  28  
 LCS     155       T     7   10   29       E        3   3   3   4   4   5   6   8   9  10  11  13  13  16  19  20  24  27  29  31  
 LCS     156       L     7   10   29       E        3   3   3   4   4   5   6   8   9   9  11  13  14  17  18  22  25  28  29  31  
 LCS     157       Y     7   10   29       E        3   3   3   4   4   5   6   8   9  10  11  13  15  18  23  24  26  28  29  31  
 LCS     158       V     7   10   29       E        3   3   3   4   4   5   6   8   9  10  11  13  13  16  20  22  25  28  29  31  
 LCS     159       Y     7   10   29       E        3   3   3   4   4   6   7   8   9  10  11  13  13  13  15  21  25  27  29  31  
 LCS     160       I     7   10   29       E        2   3   3   4   4   6   7   8   9  10  11  13  13  13  15  16  17  19  21  21  
 LCS     161       I     5   10   29       E        2   2   3   4   4   5   6   7   9  10  11  13  13  13  15  16  17  19  21  21  
 LCS     162       Y     5   10   29       C        2   2   2   3   5   6   7   8   9  10  11  13  13  13  15  16  17  19  21  21  
 LCS     163       G     3   10   29       C        0   1   1   1   1   3   5   8   9  10  11  13  13  13  15  16  17  19  21  21  
 LCS     164       M     3   11   29       C        1   2   2   3   5   6   6   7   9  12  14  16  18  20  23  24  26  28  29  31  
 LCS     165       Y     6   12   29       E        3   3   4   6   6   8   9  10  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     166       F     6   12   29       E        3   3   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     167       C     6   12   29       E        3   3   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     168       M     6   12   29       E        3   3   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     169       N     6   12   29       E        3   3   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     170       I     6   12   29       E        3   3   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     171       S     4   12   29       E        1   2   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     172       S     4   12   29       C        1   2   3   5   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     173       Q     4   12   29       E        2   2   4   6   6   8   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     174       G     4   12   29       C        0   2   3   5   5   7   9  11  12  13  15  18  20  21  23  24  26  28  29  31  
 LCS     175       D     4   12   29       C        0   1   2   5   5   6   7   7   9  10  13  18  20  21  23  24  26  28  29  31  
 LCS     176       G     4   12   29       C        1   2   3   5   5   5   6   7   8   9  13  18  20  21  23  24  26  28  29  31  
 LCS     177       A     7   11   29       C        1   2   3   5   5   5   5   7   8   9  10  18  20  21  23  24  26  28  29  31  
 LCS     178       C     7   11   29       E        2   2   3   5   5   5   5   7   7  13  15  18  20  21  23  24  26  28  29  31  
 LCS     179       V     7   11   29       E        2   2   3   5   5   5   5   7   7   8   9  18  20  21  23  24  26  28  29  31  
 LCS     180       L     7   11   29       E        2   2   3   5   5   5   5   7   7   8   9  18  20  21  23  24  26  28  29  31  
 LCS     181       L     7   11   21       E        2   2   3   5   5   5   5   7   7   8   9  10  11  18  22  23  25  28  29  31  
 LCS     182       R     7   11   21       E        1   2   3   5   5   5   5   7   7   8   9  10  11  13  15  16  19  26  27  30  
 LCS     183       A     7   11   21       E        0   2   3   5   5   5   5   5   7   8   9  10  11  13  14  14  16  19  20  25  
 LCS     184       L     3   11   21       E        1   1   3   5   5   5   5   5   7   8   9  10  11  13  14  14  18  19  23  25  
 LCS     185       E     3   11   21       E        1   1   1   4   5   5   5   5   7   8   9  10  11  13  14  14  15  19  20  22  
 LCS     186       P     3    5   20       E        1   1   2   2   3   4   5   5   7   8   9  10  13  14  16  18  20  22  23  25  
 LCS     187       L     4    5   18       E        1   1   2   2   3   4   5   5   5   9  11  13  13  14  16  18  20  22  23  25  
 LCS     188       E     4    6   18       E        1   1   2   2   3   4   5   5   5   7   8  10  11  13  15  16  20  22  23  25  
 LCS     189       G     5    6   18       C        2   2   2   2   3   4   6   8   8   9  11  13  13  14  16  18  20  22  23  25  
 LCS     190       L     5    6   18       H        2   4   5   6   6   6   7   8   8   9  11  13  13  14  16  18  20  22  23  25  
 LCS     191       E     5    6   14       H        2   2   2   2   3   5   6   7   8   9  10  13  13  14  15  16  20  22  23  25  
 LCS     192       T     5    6   14       H        2   2   5   6   6   6   7   8   8   9  11  13  13  14  16  18  20  22  23  25  
 LCS     193       M     5    6   14       H        2   2   2   2   3   4   5   6   7   8   9  11  12  13  15  16  17  19  22  25  
 LCS     194       R     3    6   14       H        0   1   1   2   3   4   4   4   7   8   9  11  12  13  15  16  17  19  21  21  
 LCS     195       Q     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     196       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     197       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     198       S     0    0    7       C        0   0   1   2   3   4   5   5   5   5   5   6   8   8   8   9   9  10  10  11  
 LCS     199       T     0    0    7       C        0   0   1   1   1   3   5   5   5   5   5   6   8   8   8   9   9  10  10  11  
 LCS    BREAK 
 LCS     208       V     3    3   20       C        0   1   1   1   2   2   5   5   6   6   8   8   8   9   9  10  10  10  12  12  
 LCS     209       L     3    4   20       C        1   1   1   2   2   2   5   5   6   6   8   8   8   9   9  10  10  10  12  12  
 LCS     210       K     3    4   20       C        1   1   1   2   2   2   5   5   6   7   8   8   8   9   9  10  10  10  12  12  
 LCS     211       D     3    4   20       C        1   1   1   2   3   3   5   6   7   7   8   8   8   9   9  10  10  10  12  12  
 LCS     212       R     3    6   20       H        1   1   1   2   2   3   5   6   7   7   8   8   8   9   9  10  10  10  12  12  
 LCS     213       E     4    6   20       H        1   2   2   2   3   3   5   6   7   7   8   8   8   9   9  10  10  10  12  22  
 LCS     214       L     4    6   20       H        1   2   2   2   3   3   4   5   6   7   8   8   8   9   9  10  10  10  20  22  
 LCS     215       C     4    6   20       H        1   2   2   2   3   3   4   6   9  10  12  15  19  21  23  24  26  28  29  31  
 LCS     216       S     4   11   20       E        0   2   2   3   5   5   5   8   9  12  14  17  19  21  23  24  26  28  29  31  
 LCS     217       G     3   11   20       C        0   1   2   2   5   6   7   8   8   9  11  13  13  14  16  19  22  27  29  31  
 LCS     218       P     3   11   20       H        1   1   1   2   4   5   5   6   7   9  10  11  12  14  15  16  18  20  23  25  
 LCS     219       S     8   11   20       H        4   4   5   6   6   6   7   8   8   9  11  13  13  14  16  18  20  22  23  30  
 LCS     220       K     8   11   20       H        4   4   5   6   6   6   7   8   9  10  11  15  19  21  23  24  26  28  29  31  
 LCS     221       L     8   11   20       H        4   4   5   6   6   6   7   8   9  10  11  13  17  20  23  24  26  28  29  31  
 LCS     222       C     8   11   20       H        4   4   5   6   6   6   7   8   8   9  11  13  13  14  16  18  20  22  23  25  
 LCS     223       Q     8   11   20       H        4   4   5   6   6   6   7   8   8   9  11  13  13  14  16  18  20  22  23  25  
 LCS     224       A     8   11   20       H        4   4   5   6   6   6   7   8   8   9  11  13  13  14  17  18  20  22  23  27  
 LCS     225       L     8   11   20       C        4   4   5   6   6   6   7   8   8   9  11  13  13  14  16  18  20  22  23  25  
 LCS     226       A     8   11   20       C        4   4   5   6   6   6   7   8   8   9  11  13  13  14  16  18  20  22  23  25  
 LCS     227       I     3    4   20       C        1   1   1   2   2   2   4   5   6   7   8   8  11  13  14  16  19  21  23  25  
 LCS     228       N     3    4   20       C        1   1   1   2   2   2   3   3   4   7   8   8   8   9  14  18  20  22  23  25  
 LCS     229       K     3    4   20       H        1   1   1   2   2   2   3   4   5   6   6   8   8   8   9   9   9  20  23  25  
 LCS     230       S     3    4   20       H        1   1   1   2   3   4   4   5   6   7   8   8   8   9   9  10  10  10  11  11  
 LCS    BREAK 
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.42 
 
 NUMBER_OF_CA_Tg:  200      NUMBER_OF_CA_Pr:  114      PERCENT_OF_CA:  57.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       8       9      11      12      13      16      18      22      24      27      31      36      40      43      47      48      52      56      59      62  
 GDT PERCENT_OF_CA_Pr    7.02    7.89    9.65   10.53   11.40   14.04   15.79   19.30   21.05   23.68   27.19   31.58   35.09   37.72   41.23   42.11   45.61   49.12   51.75   54.39 
 GDT PERCENT_OF_CA_Tg    4.00    4.50    5.50    6.00    6.50    8.00    9.00   11.00   12.00   13.50   15.50   18.00   20.00   21.50   23.50   24.00   26.00   28.00   29.50   31.00 
 GDT FRAGMENT: Beg-End 219-226 100-226 100-226  97-226 102-173 100-173  99-174  99-174  99-174  98-174  96-174  96-180  96-180  96-216  96-220  96-221  96-221  90-221  90-221  90-221 
 GDT RMS_LOCAL           0.31    0.77    0.88    1.03    1.48    2.00    2.36    3.07    3.28    3.54    3.89    4.35    4.60    4.88    5.28    5.42    5.80    6.32    6.54    6.84 
 GDT RMS_ALL_CA         21.37   19.10   19.16   18.88   15.84   15.78   15.66   14.86   14.87   14.75   14.67   14.72   14.60   14.59   14.54   14.25   14.21   14.24   14.13   14.11 
 
 
 TEST (CA)  RMS =  12.89               (Number of atoms:  114) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   12.89        114    57.0   200     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1130                            CRMSCA  
     SECONDARY STRUCTURE . .   11.05         61    72.6    84     CRMSCA  
     SURFACE . . . . . . . .   15.08         49    51.0    96     CRMSCA  
     BURIED  . . . . . . . .   10.94         65    62.5   104     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   12.93        559    57.0   981     CRMSMC  
     SECONDARY STRUCTURE . .   11.20        304    72.9   417     CRMSMC  
     SURFACE . . . . . . . .   15.05        241    51.4   469     CRMSMC  
     BURIED  . . . . . . . .   11.06        318    62.1   512     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   13.45        103    13.8   746     CRMSSC  
     RELIABLE SIDE CHAINS  .   13.45        103    16.2   634     CRMSSC  
     SECONDARY STRUCTURE . .   11.61         60    17.2   349     CRMSSC  
     SURFACE . . . . . . . .   15.64         45    12.0   375     CRMSSC  
     BURIED  . . . . . . . .   11.46         58    15.6   371     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   12.93        559    36.2  1546     CRMSALL 
     SECONDARY STRUCTURE . .   11.20        304    44.4   685     CRMSALL 
     SURFACE . . . . . . . .   15.05        241    31.8   759     CRMSALL 
     BURIED  . . . . . . . .   11.06        318    40.4   787     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.641      0.279       0.188    114    57.0   200     ERRCA  
     SECONDARY STRUCTURE . .    5.113      0.294       0.224     61    72.6    84     ERRCA  
     SURFACE . . . . . . . .    7.273      0.324       0.194     49    51.0    96     ERRCA  
     BURIED  . . . . . . . .    4.412      0.245       0.183     65    62.5   104     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.694      0.281       0.187    559    57.0   981     ERRMC  
     SECONDARY STRUCTURE . .    5.185      0.297       0.222    304    72.9   417     ERRMC  
     SURFACE . . . . . . . .    7.309      0.326       0.196    241    51.4   469     ERRMC  
     BURIED  . . . . . . . .    4.471      0.248       0.181    318    62.1   512     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    6.031      0.286       0.182    103    13.8   746     ERRSC  
     RELIABLE SIDE CHAINS  .    6.031      0.286       0.182    103    16.2   634     ERRSC  
     SECONDARY STRUCTURE . .    5.125      0.278       0.198     60    17.2   349     ERRSC  
     SURFACE . . . . . . . .    7.825      0.338       0.201     45    12.0   375     ERRSC  
     BURIED  . . . . . . . .    4.639      0.246       0.167     58    15.6   371     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    5.694      0.281       0.187    559    36.2  1546     ERRALL 
     SECONDARY STRUCTURE . .    5.185      0.297       0.222    304    44.4   685     ERRALL 
     SURFACE . . . . . . . .    7.309      0.326       0.196    241    31.8   759     ERRALL 
     BURIED  . . . . . . . .    4.471      0.248       0.181    318    40.4   787     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         3         3        14        47     114     200   DISTCA 
CA  (P)      0.00      1.50      1.50      7.00     23.50             200   DISTCA 
CA  (RMS)    0.00      1.63      1.63      3.67      6.87                   DISTCA 
 
ALL (N)         0        10        20        64       223     559    1546   DISTALL 
ALL (P)      0.00      0.65      1.29      4.14     14.42            1546   DISTALL 
ALL (RMS)    0.00      1.47      2.06      3.52      6.77                   DISTALL 
 
 
 
 
END of the results output 
