 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 24 , MODEL 24 , TARGET 200 
#          The number of residues possible to evaluate: 24 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   195     Q     H     C             1.00 
 SSP   196     L     H     C             1.00 
 SSP   197     R     H     C             1.00 
 SSP   198     S     C     C             1.00 
 SSP   199     T     C     C             1.00 
 SSP  BREAK 
 SSP   208     V     C     C             1.00 
 SSP   209     L     C     C             1.00 
 SSP   210     K     C     E             1.00 
 SSP   211     D     C     E             1.00 
 SSP   212     R     H     E             1.00 
 SSP   213     E     H     E             1.00 
 SSP   214     L     H     E             1.00 
 SSP   215     C     H     C             1.00 
 SSP   216     S     E     C             1.00 
 SSP   217     G     C     C             1.00 
 SSP   218     P     H     C             1.00 
 SSP   219     S     H     C             1.00 
 SSP   220     K     H     C             1.00 
 SSP   221     L     H     C             1.00 
 SSP   222     C     H     E             1.00 
 SSP   223     Q     H     E             1.00 
 SSP   224     A     H     E             1.00 
 SSP   225     L     C     E             1.00 
 SSP   226     A     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              25.0       0.0      0.0     66.7     12.0 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        21.4       0.0      0.0     59.4     12.0 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            3               0.0              66.7 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      24    100.0     25.0 
 
 BIN  0.00 - 1.00      1.00      24    100.0     25.0 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 181 
 
# WARNING! TARGET 1546 atoms, MODEL 1594 atoms, 1468 common with TARGET 
           Number of atoms possible to evaluate: 96 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .   103.45           23.3    30     7.6   395     ARMSMC  
     SECONDARY STRUCTURE . .   108.26           50.0     6     3.6   167     ARMSMC  
     SURFACE . . . . . . . .    95.56           23.5    17     9.1   187     ARMSMC  
     BURIED  . . . . . . . .   112.94           23.1    13     6.2   208     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   143     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   128     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    65     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    73     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    45     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    53     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    34     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    25     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    16     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     8     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  195 - 226  24   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    208 - 223      5.00    11.00 
  LCS LOCAL_SCORE:             55.90 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  195 - 226  24   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    214 - 221      1.80    11.05 
  LCS LOCAL_SCORE:             22.05 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  195 - 226  24   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    208 - 211      0.28    22.04 
  LCS LOCAL_SCORE:             13.19 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     195       Q     3    3    5       H        1   1   1   1   1   2   2   2   2   2   2   2   2   2   2   3   3   4   5   6  
 LCS     196       L     3    4    5       H        1   1   1   1   2   2   2   2   2   2   2   2   2   2   4   5   7   7   8   8  
 LCS     197       R     3    4    5       H        1   1   1   1   2   2   2   2   2   2   2   2   2   2   2   2   3   4   4   5  
 LCS     198       S     3    4    5       C        1   1   1   1   2   2   2   2   2   2   2   2   2   2   2   2   3   4   5   7  
 LCS     199       T     3    4    5       C        0   1   1   1   2   2   2   2   2   2   2   2   2   2   4   5   5   7   8   8  
 LCS    BREAK 
 LCS     208       V     4    5   16       C        2   2   2   2   2   2   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     209       L     4    5   16       C        2   2   2   2   2   2   2   3   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     210       K     4    5   16       C        2   2   2   2   2   3   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     211       D     4    5   16       C        2   2   2   2   2   3   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     212       R     3    5   16       H        1   1   2   2   2   3   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     213       E     3    4   16       H        1   1   2   2   2   3   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     214       L     3    8   16       H        1   1   2   3   3   4   4   4   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     215       C     3    8   16       H        1   1   2   3   3   4   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     216       S     3    8   16       E        0   1   1   3   3   4   4   4   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     217       G     3    8   16       C        1   1   2   3   3   4   4   4   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     218       P     3    8   16       H        1   1   2   3   3   4   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     219       S     3    8   16       H        1   1   2   3   3   4   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     220       K     3    8   16       H        1   1   1   3   3   4   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     221       L     3    8   16       H        1   1   2   2   3   4   4   5   5   6   6   7   7   7   7   8   8   8   8   8  
 LCS     222       C     3    3   16       H        1   1   1   1   2   2   3   4   4   5   5   6   6   7   7   8   8   8   8   8  
 LCS     223       Q     3    3   16       H        1   1   1   1   1   2   2   3   4   5   5   6   6   7   7   8   8   8   8   8  
 LCS     224       A     3    3   14       H        1   1   1   1   1   2   2   3   4   5   5   6   6   7   7   7   8   8   8   8  
 LCS     225       L     3    3   14       C        1   1   1   1   1   2   2   3   4   4   5   6   6   6   7   7   7   7   8   8  
 LCS     226       A     3    3   13       C        1   1   1   1   1   2   2   2   2   3   5   5   5   5   7   7   7   7   7   8  
 LCS    BREAK 
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.19 
 
 NUMBER_OF_CA_Tg:  200      NUMBER_OF_CA_Pr:   24      PERCENT_OF_CA:  12.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       4       4       4       7       7       8       9      10      11      12      13      14      14      14      15      16      17      17      17      17  
 GDT PERCENT_OF_CA_Pr   16.67   16.67   16.67   29.17   29.17   33.33   37.50   41.67   45.83   50.00   54.17   58.33   58.33   58.33   62.50   66.67   70.83   70.83   70.83   70.83 
 GDT PERCENT_OF_CA_Tg    2.00    2.00    2.00    3.50    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.00    7.00    7.50    8.00    8.50    8.50    8.50    8.50 
 GDT FRAGMENT: Beg-End 208-211 208-211 208-211 214-220 214-220 214-221 208-221 208-221 208-221 208-221 208-221 208-221 208-221 208-221 208-222 208-223 208-224 208-224 208-224 208-224 
 GDT RMS_LOCAL           0.28    0.28    0.28    1.56    1.56    1.80    2.77    3.04    3.21    3.44    3.68    3.93    3.93    3.93    4.50    5.00    5.53    5.53    5.53    5.53 
 GDT RMS_ALL_CA         22.04   22.04   22.04   11.09   11.09   11.05   11.53   11.60   11.75   11.68   11.58   11.82   11.82   11.82   11.28   11.00   10.52   10.52   10.52   10.52 
 
 
 TEST (CA)  RMS =   9.48               (Number of atoms:   24) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    9.48         24    12.0   200     CRMSCA  
     CRN = ALL/NP  . . . . .    0.3952                            CRMSCA  
     SECONDARY STRUCTURE . .    9.18         10    11.9    84     CRMSCA  
     SURFACE . . . . . . . .   10.48         12    12.5    96     CRMSCA  
     BURIED  . . . . . . . .    8.37         12    11.5   104     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    9.60         96     9.8   981     CRMSMC  
     SECONDARY STRUCTURE . .    9.24         40     9.6   417     CRMSMC  
     SURFACE . . . . . . . .   10.57         48    10.2   469     CRMSMC  
     BURIED  . . . . . . . .    8.52         48     9.4   512     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   746     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   634     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   349     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   375     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   371     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    9.60         96     6.2  1546     CRMSALL 
     SECONDARY STRUCTURE . .    9.24         40     5.8   685     CRMSALL 
     SURFACE . . . . . . . .   10.57         48     6.3   759     CRMSALL 
     BURIED  . . . . . . . .    8.52         48     6.1   787     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    8.289      1.000       0.500     24    12.0   200     ERRCA  
     SECONDARY STRUCTURE . .    8.082      1.000       0.500     10    11.9    84     ERRCA  
     SURFACE . . . . . . . .    9.092      1.000       0.500     12    12.5    96     ERRCA  
     BURIED  . . . . . . . .    7.486      1.000       0.500     12    11.5   104     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    8.335      1.000       0.500     96     9.8   981     ERRMC  
     SECONDARY STRUCTURE . .    8.202      1.000       0.500     40     9.6   417     ERRMC  
     SURFACE . . . . . . . .    9.102      1.000       0.500     48    10.2   469     ERRMC  
     BURIED  . . . . . . . .    7.568      1.000       0.500     48     9.4   512     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   746     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   634     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   349     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   375     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   371     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    8.335      1.000       0.500     96     6.2  1546     ERRALL 
     SECONDARY STRUCTURE . .    8.202      1.000       0.500     40     5.8   685     ERRALL 
     SURFACE . . . . . . . .    9.102      1.000       0.500     48     6.3   759     ERRALL 
     BURIED  . . . . . . . .    7.568      1.000       0.500     48     6.1   787     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         2         4         6        15      24     200   DISTCA 
CA  (P)      0.00      1.00      2.00      3.00      7.50             200   DISTCA 
CA  (RMS)    0.00      1.46      2.14      3.10      5.98                   DISTCA 
 
ALL (N)         0         8        13        26        61      96    1546   DISTALL 
ALL (P)      0.00      0.52      0.84      1.68      3.95            1546   DISTALL 
ALL (RMS)    0.00      1.49      2.07      3.27      5.91                   DISTALL 
 
 
 
 
END of the results output 
