 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 12 , MODEL 12 , TARGET 200 
#          The number of residues possible to evaluate: 12 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   105     Q     C     C             1.00 
 SSP   106     V     E     C             1.00 
 SSP   107     L     E     H             1.00 
 SSP   108     V     E     H             1.00 
 SSP   109     R     E     H             1.00 
 SSP   110     R     E     C             1.00 
 SSP   111     L     C     C             1.00 
 SSP   112     P     C     C             1.00 
 SSP   113     N     C     C             1.00 
 SSP   114     G     C     C             1.00 
 SSP   115     T     C     C             1.00 
 SSP   116     E     E     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              50.0       0.0      0.0    100.0      6.0 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        45.8     100.0      0.0     91.7      6.0 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            2               0.0              50.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      12    100.0     50.0 
 
 BIN  0.00 - 1.00      1.00      12    100.0     50.0 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 181 
 
# WARNING! TARGET 1546 atoms, MODEL 1659 atoms, 1498 common with TARGET 
           Number of atoms possible to evaluate: 48 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    79.19           50.0    22     5.6   395     ARMSMC  
     SECONDARY STRUCTURE . .    89.38           27.3    11     6.6   167     ARMSMC  
     SURFACE . . . . . . . .    68.57           54.5    11     5.9   187     ARMSMC  
     BURIED  . . . . . . . .    88.54           45.5    11     5.3   208     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   143     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   128     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    65     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    73     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    45     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    53     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    34     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    25     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    16     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     8     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  105 - 116  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    106 - 116      4.40     5.53 
  LCS LOCAL_SCORE:             88.89 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  105 - 116  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    108 - 113      1.39     8.81 
  LONGEST_CONTINUOUS_SEGMENT     6    111 - 116      1.71     9.93 
  LCS LOCAL_SCORE:             45.83 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  105 - 116  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    109 - 113      0.65     9.13 
  LCS LOCAL_SCORE:             36.81 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     105       Q     4    4    7       C        2   2   2   2   2   2   2   2   2   2   3   3   4   4   4   4   6   6   6   6  
 LCS     106       V     4    4   11       E        2   2   2   2   2   2   2   2   2   2   3   5   5   5   5   5   6   6   6   6  
 LCS     107       L     4    4   11       E        2   2   2   2   2   2   3   3   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     108       V     4    6   11       E        2   2   2   2   3   3   3   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     109       R     5    6   11       E        1   2   2   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     110       R     5    6   11       E        1   2   2   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     111       L     5    6   11       C        1   2   2   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     112       P     5    6   11       C        1   2   2   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     113       N     5    6   11       C        1   2   2   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     114       G     4    6   11       C        1   2   2   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     115       T     4    6   11       C        1   2   2   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS     116       E     4    6   11       E        1   2   2   2   3   3   4   4   4   5   5   5   5   5   5   5   6   6   6   6  
 LCS    BREAK 
 LCS    BREAK 
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.13 
 
 NUMBER_OF_CA_Tg:  200      NUMBER_OF_CA_Pr:   12      PERCENT_OF_CA:   6.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       4       5       5       5       6       7       8       9       9      10      10      10      10      11      11      11      12      12      12      12  
 GDT PERCENT_OF_CA_Pr   33.33   41.67   41.67   41.67   50.00   58.33   66.67   75.00   75.00   83.33   83.33   83.33   83.33   91.67   91.67   91.67  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg    2.00    2.50    2.50    2.50    3.00    3.50    4.00    4.50    4.50    5.00    5.00    5.00    5.00    5.50    5.50    5.50    6.00    6.00    6.00    6.00 
 GDT FRAGMENT: Beg-End 105-108 109-113 109-113 109-113 108-113 109-116 109-116 108-116 108-116 107-116 107-116 107-116 107-116 106-116 106-116 106-116 105-116 105-116 105-116 105-116 
 GDT RMS_LOCAL           0.39    0.65    0.65    0.65    1.39    2.26    2.47    3.14    3.14    3.57    3.57    3.57    3.57    4.40    4.40    4.40    5.23    5.23    5.23    5.23 
 GDT RMS_ALL_CA         14.12    9.13    9.13    9.13    8.81    8.04    8.12    7.18    7.18    6.32    6.32    6.32    6.32    5.53    5.53    5.53    5.23    5.23    5.23    5.23 
 
 
 TEST (CA)  RMS =   5.23               (Number of atoms:   12) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    5.23         12     6.0   200     CRMSCA  
     CRN = ALL/NP  . . . . .    0.4360                            CRMSCA  
     SECONDARY STRUCTURE . .    4.73          6     7.1    84     CRMSCA  
     SURFACE . . . . . . . .    4.28          6     6.2    96     CRMSCA  
     BURIED  . . . . . . . .    6.03          6     5.8   104     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    5.05         48     4.9   981     CRMSMC  
     SECONDARY STRUCTURE . .    4.65         24     5.8   417     CRMSMC  
     SURFACE . . . . . . . .    4.36         24     5.1   469     CRMSMC  
     BURIED  . . . . . . . .    5.65         24     4.7   512     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   746     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   634     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   349     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   375     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   371     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    5.05         48     3.1  1546     CRMSALL 
     SECONDARY STRUCTURE . .    4.65         24     3.5   685     CRMSALL 
     SURFACE . . . . . . . .    4.36         24     3.2   759     CRMSALL 
     BURIED  . . . . . . . .    5.65         24     3.0   787     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.826      1.000       0.500     12     6.0   200     ERRCA  
     SECONDARY STRUCTURE . .    4.560      1.000       0.500      6     7.1    84     ERRCA  
     SURFACE . . . . . . . .    3.977      1.000       0.500      6     6.2    96     ERRCA  
     BURIED  . . . . . . . .    5.676      1.000       0.500      6     5.8   104     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.690      1.000       0.500     48     4.9   981     ERRMC  
     SECONDARY STRUCTURE . .    4.507      1.000       0.500     24     5.8   417     ERRMC  
     SURFACE . . . . . . . .    4.069      1.000       0.500     24     5.1   469     ERRMC  
     BURIED  . . . . . . . .    5.311      1.000       0.500     24     4.7   512     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   746     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   634     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   349     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   375     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   371     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.690      1.000       0.500     48     3.1  1546     ERRALL 
     SECONDARY STRUCTURE . .    4.507      1.000       0.500     24     3.5   685     ERRALL 
     SURFACE . . . . . . . .    4.069      1.000       0.500     24     3.2   759     ERRALL 
     BURIED  . . . . . . . .    5.311      1.000       0.500     24     3.0   787     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         2         7        12      12     200   DISTCA 
CA  (P)      0.00      0.50      1.00      3.50      6.00             200   DISTCA 
CA  (RMS)    0.00      1.64      2.18      3.62      5.23                   DISTCA 
 
ALL (N)         0         2         7        32        47      48    1546   DISTALL 
ALL (P)      0.00      0.13      0.45      2.07      3.04            1546   DISTALL 
ALL (RMS)    0.00      1.41      2.35      3.75      4.86                   DISTALL 
 
 
 
 
END of the results output 
