 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 64 , MODEL 64 , TARGET 200 
#          The number of residues possible to evaluate: 64 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   171     S     E     C             1.00 
 SSP   172     S     C     C             1.00 
 SSP   173     Q     E     C             1.00 
 SSP   174     G     C     C             1.00 
 SSP   175     D     C     C             1.00 
 SSP   176     G     C     C             1.00 
 SSP   177     A     C     C             1.00 
 SSP   178     C     E     C             1.00 
 SSP   179     V     E     C             1.00 
 SSP   180     L     E     C             1.00 
 SSP   181     L     E     C             1.00 
 SSP   182     R     E     C             1.00 
 SSP   183     A     E     C             1.00 
 SSP   184     L     E     H             1.00 
 SSP   185     E     E     H             1.00 
 SSP   186     P     E     H             1.00 
 SSP   187     L     E     H             1.00 
 SSP   188     E     E     H             1.00 
 SSP   189     G     C     H             1.00 
 SSP   190     L     H     H             1.00 
 SSP   191     E     H     H             1.00 
 SSP   192     T     H     H             1.00 
 SSP   193     M     H     H             1.00 
 SSP   194     R     H     H             1.00 
 SSP   195     Q     H     H             1.00 
 SSP   196     L     H     H             1.00 
 SSP   197     R     H     C             1.00 
 SSP   198     S     C     C             1.00 
 SSP  BREAK 
 SSP   213     E     H     C             1.00 
 SSP   214     L     H     H             1.00 
 SSP  BREAK 
 SSP   221     L     H     H             1.00 
 SSP   222     C     H     H             1.00 
 SSP   223     Q     H     H             1.00 
 SSP   224     A     H     H             1.00 
 SSP   225     L     C     H             1.00 
 SSP   226     A     C     H             1.00 
 SSP  BREAK 
 SSP   229     K     H     H             1.00 
 SSP   230     S     H     H             1.00 
 SSP   231     F     H     H             1.00 
 SSP   232     D     C     H             1.00 
 SSP   233     Q     C     C             1.00 
 SSP   234     R     C     C             1.00 
 SSP   235     D     E     C             1.00 
 SSP   236     L     C     C             1.00 
 SSP   237     A     C     C             1.00 
 SSP   238     Q     C     C             1.00 
 SSP   239     D     C     C             1.00 
 SSP   240     E     C     H             1.00 
 SSP   241     A     C     H             1.00 
 SSP   242     V     E     H             1.00 
 SSP   243     W     E     C             1.00 
 SSP   244     L     E     C             1.00 
 SSP   245     E     E     C             1.00 
 SSP   246     R     C     C             1.00 
 SSP  BREAK 
 SSP   255     A     C     C             1.00 
 SSP   256     V     E     H             1.00 
 SSP   257     V     E     H             1.00 
 SSP   258     A     E     H             1.00 
 SSP   259     A     E     H             1.00 
 SSP   260     A     C     H             1.00 
 SSP   261     R     C     H             1.00 
 SSP   262     V     C     H             1.00 
 SSP   263     G     C     C             1.00 
 SSP   264     V     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              48.4      88.2      0.0     64.0     32.0 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        41.8      84.0      0.0     49.9     32.0 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            8              37.5              37.5 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      64    100.0     48.4 
 
 BIN  0.00 - 1.00      1.00      64    100.0     48.4 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 181 
 
# WARNING! TARGET 1546 atoms, MODEL 1435 atoms, 1317 common with TARGET 
           Number of atoms possible to evaluate: 256 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    92.52           37.6   101    25.6   395     ARMSMC  
     SECONDARY STRUCTURE . .    85.08           50.0    54    32.3   167     ARMSMC  
     SURFACE . . . . . . . .    88.43           40.0    40    21.4   187     ARMSMC  
     BURIED  . . . . . . . .    95.11           36.1    61    29.3   208     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   143     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   128     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    65     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    73     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    45     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    53     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    34     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    25     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    16     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     8     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  171 - 198  28   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    181 - 196      4.92    19.95 
  LONGEST_CONTINUOUS_SEGMENT    16    183 - 198      4.89    26.90 
  LCS LOCAL_SCORE:             52.81 
 
 FRAGMENT  2  221 - 226  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    221 - 226      0.37     0.37 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  229 - 264  28   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    232 - 244      4.86    20.97 
  LONGEST_CONTINUOUS_SEGMENT    13    233 - 245      4.77    18.45 
  LCS LOCAL_SCORE:             54.21 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  171 - 198  28   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    187 - 198      1.96    30.19 
  LCS LOCAL_SCORE:             29.08 
 
 FRAGMENT  2  221 - 226  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    221 - 226      0.37     0.37 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  229 - 264  28   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    231 - 237      1.60    22.89 
  LONGEST_CONTINUOUS_SEGMENT     7    239 - 245      1.43    25.73 
  LCS LOCAL_SCORE:             23.98 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  171 - 198  28   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    189 - 198      0.42    32.37 
  LCS LOCAL_SCORE:             20.92 
 
 FRAGMENT  2  221 - 226  6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    221 - 226      0.37     0.37 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3  229 - 264  28   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    232 - 237      0.83    23.91 
  LCS LOCAL_SCORE:             14.54 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     171       S     3    6    7       E        0   1   1   2   3   3   3   3   3   3   3   3   3   3   4   8   9   9  10  11  
 LCS     172       S     4    6    7       C        2   2   2   2   3   3   3   3   3   3   3   3   3   3   3   3   4   6  10  11  
 LCS     173       Q     4    6   14       E        2   2   2   2   3   3   3   3   3   5   6   6   7   7   7   8   9   9  10  11  
 LCS     174       G     4    6   14       C        2   2   2   2   3   3   3   4   4   5   6   6   7   7   7   8   9   9  10  11  
 LCS     175       D     4    6   14       C        2   2   2   2   3   3   3   4   4   5   6   6   7   7   7   8   9   9  10  11  
 LCS     176       G     3    6   14       C        1   1   2   2   3   3   3   4   4   5   6   6   7   7   7   8   9   9  10  11  
 LCS     177       A     4    6   14       C        1   2   2   2   3   3   3   4   4   5   6   6   7   7   7   9   9  10  10  11  
 LCS     178       C     4    6   14       E        1   2   2   2   3   3   3   4   4   5   6   6   7   7   8   9   9  10  10  11  
 LCS     179       V     4    6   14       E        1   2   2   2   3   3   3   4   4   5   6   6   7   7   8   9   9  13  14  16  
 LCS     180       L     4    6   14       E        1   2   2   2   3   3   3   4   4   5   6   6   8   9  11  12  13  14  14  16  
 LCS     181       L     3    4   16       E        1   1   1   2   2   2   3   4   4   5   6   7   7   7   8   9   9  10  10  11  
 LCS     182       R     3    4   16       E        1   1   1   2   2   2   3   3   4   5   6   7   7   7   8   9   9   9  10  11  
 LCS     183       A     3    4   16       E        0   1   1   2   2   3   3   4   5   5   6   8   9  11  12  12  13  14  14  16  
 LCS     184       L     3    4   16       E        1   1   1   2   2   4   5   5   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     185       E     3    3   16       E        1   1   1   1   3   4   5   5   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     186       P     3    5   16       E        1   1   1   2   4   5   5   6   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     187       L     4   12   16       E        1   1   2   2   4   5   6   6   6   7   8   9  10  11  12  13  13  14  14  16  
 LCS     188       E     4   12   16       E        1   1   2   2   4   5   6   6   6   7   7   7  10  11  12  13  13  14  14  16  
 LCS     189       G    10   12   16       C        4   5   5   5   5   5   6   6   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     190       L    10   12   16       H        4   5   5   5   5   5   6   6   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     191       E    10   12   16       H        4   5   5   5   5   5   6   6   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     192       T    10   12   16       H        4   5   5   5   5   5   6   6   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     193       M    10   12   16       H        4   5   5   5   5   5   6   6   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     194       R    10   12   16       H        4   5   5   5   5   5   6   6   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     195       Q    10   12   16       H        4   5   5   5   5   5   6   6   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     196       L    10   12   16       H        4   5   5   5   5   5   6   6   6   7   7   7   8   8   9   9   9  12  13  16  
 LCS     197       R    10   12   16       H        4   5   5   5   5   5   6   6   6   7   7   7   8   8   9   9   9  10  11  16  
 LCS     198       S    10   12   16       C        4   5   5   5   5   5   6   6   6   7   7   9   9  11  12  13  13  14  14  16  
 LCS     199       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS    BREAK 
 LCS     208       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     209       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     210       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     211       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     212       R     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     213       E     0    0    0       H        0   0   0   1   2   2   3   5   6   7   7   8   9  10  12  13  13  14  14  16  
 LCS     214       L     0    0    0       H        0   0   1   2   3   3   4   4   6   7   7   8  10  11  12  13  13  14  14  16  
 LCS     215       C     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     216       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     217       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     218       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     219       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     220       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     221       L     6    6    6       H        2   3   3   3   3   4   5   5   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     222       C     6    6    6       H        2   3   3   3   3   4   5   5   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     223       Q     6    6    6       H        2   3   3   3   3   4   5   5   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     224       A     6    6    6       H        2   3   3   3   3   3   3   4   5   5   7   8  10  11  12  13  13  14  14  16  
 LCS     225       L     6    6    6       C        2   3   3   3   3   3   3   3   3   4   5   6   9  10  12  13  13  14  14  16  
 LCS     226       A     6    6    6       C        2   3   3   3   3   3   3   3   3   3   3   4   9  10  12  13  13  14  14  16  
 LCS     227       I     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     228       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     229       K     4    5   12       H        2   2   2   2   2   2   2   5   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     230       S     4    5   12       H        2   2   2   2   2   2   2   4   4   7   8   9  10  11  12  13  13  14  14  16  
 LCS     231       F     4    7   12       H        2   2   2   2   3   4   5   5   6   7   8   9  10  11  12  13  13  14  14  16  
 LCS     232       D     6    7   13       C        2   2   3   3   3   4   5   5   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     233       Q     6    7   13       C        2   2   3   3   3   3   4   5   6   8   8   9  10  11  12  13  13  14  14  16  
 LCS     234       R     6    7   13       C        2   2   3   3   3   3   3   4   5   5   5   6   9  10  11  12  12  13  14  16  
 LCS     235       D     6    7   13       E        2   2   3   3   3   3   3   4   5   5   5   6   7   8   9   9  10  11  12  13  
 LCS     236       L     6    7   13       C        2   2   3   3   3   3   3   4   5   5   5   6   7   8   9   9  10  11  11  12  
 LCS     237       A     6    7   13       C        1   2   3   3   3   3   3   4   5   5   5   6   7   8   9   9   9   9  10  11  
 LCS     238       Q     3    4   13       C        1   1   1   1   2   3   3   4   4   5   5   6   7   8   9   9   9   9  10  11  
 LCS     239       D     5    7   13       C        1   2   3   3   3   3   3   4   4   4   5   6   7   7   8   8   9   9  10  10  
 LCS     240       E     5    7   13       C        1   2   3   3   3   3   3   4   4   4   5   6   7   7   8   8   9   9  10  10  
 LCS     241       A     5    7   13       C        1   2   3   3   3   3   3   4   4   4   5   6   7   7   8   8   9  11  12  12  
 LCS     242       V     5    7   13       E        1   2   3   3   3   3   3   4   4   4   5   6   7   7   8   8   9  11  11  12  
 LCS     243       W     5    7   13       E        0   2   3   3   3   3   3   3   3   4   5   6   7   9  10  10  10  11  12  12  
 LCS     244       L     4    7   13       E        0   2   3   3   3   3   4   4   5   6   7   7   8   9  10  10  11  11  12  12  
 LCS     245       E     4    7   13       E        0   2   2   3   3   3   4   4   5   6   7   7   8   9  10  10  11  11  12  12  
 LCS     246       R     0    4   11       C        0   0   1   2   2   3   3   4   5   6   7   7   8   9  10  10  11  11  12  12  
 LCS    BREAK 
 LCS     255       A     3    4   11       C        0   1   1   2   2   2   2   3   4   4   4   5   5   5   5   6   8   8  10  11  
 LCS     256       V     3    4   11       E        0   1   1   1   2   3   3   3   5   6   7   7   8   8   9   9  11  11  12  12  
 LCS     257       V     3    4   11       E        1   2   2   2   3   3   4   4   5   6   7   7   8   9  10  10  11  11  12  12  
 LCS     258       A     3    4   11       E        1   1   1   1   2   3   4   4   5   6   7   7   8   9  10  10  11  11  12  12  
 LCS     259       A     3    4   11       E        1   2   2   2   3   3   4   4   5   6   7   7   8   9  10  10  11  11  12  12  
 LCS     260       A     3    4   11       C        0   1   1   1   2   2   3   4   5   5   6   7   8   9  10  10  11  11  12  12  
 LCS     261       R     3    4   11       C        0   1   1   2   2   2   2   4   5   5   6   7   8   9  10  10  11  11  12  12  
 LCS     262       V     3    4   11       C        1   1   1   2   2   2   2   3   5   5   6   7   8   9  10  10  11  11  12  12  
 LCS     263       G     3    4   11       C        1   1   1   2   2   2   2   2   3   3   4   5   6   7   7   8   9  10  12  12  
 LCS     264       V     3    4    9       C        1   1   1   2   2   2   3   4   5   5   6   7   8   9  10  10  11  11  12  12  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.79 
 
 NUMBER_OF_CA_Tg:  200      NUMBER_OF_CA_Pr:   64      PERCENT_OF_CA:  32.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      10      10      10      10      11      12      13      13      16      17      18      20      23      24      26      27      28      29      32  
 GDT PERCENT_OF_CA_Pr   14.06   15.62   15.62   15.62   15.62   17.19   18.75   20.31   20.31   25.00   26.56   28.12   31.25   35.94   37.50   40.62   42.19   43.75   45.31   50.00 
 GDT PERCENT_OF_CA_Tg    4.50    5.00    5.00    5.00    5.00    5.50    6.00    6.50    6.50    8.00    8.50    9.00   10.00   11.50   12.00   13.00   13.50   14.00   14.50   16.00 
 GDT FRAGMENT: Beg-End 189-197 189-198 189-198 189-198 189-198 188-198 187-198 186-198 186-198 184-233 184-233 184-233 184-233 184-233 183-233 184-233 183-233 180-233 179-233 179-234 
 GDT RMS_LOCAL           0.33    0.42    0.42    0.42    0.42    1.60    1.96    2.36    2.36    3.86    4.02    4.16    4.51    4.97    5.16    5.47    5.67    5.85    6.05    6.62 
 GDT RMS_ALL_CA         32.22   32.13   32.13   32.13   32.13   31.75   30.06   31.15   31.15   21.61   21.49   21.73   21.95   21.65   22.40   21.83   22.10   22.30   22.25   21.68 
 
 
 TEST (CA)  RMS =  15.17               (Number of atoms:   64) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   15.17         64    32.0   200     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2370                            CRMSCA  
     SECONDARY STRUCTURE . .   14.07         32    38.1    84     CRMSCA  
     SURFACE . . . . . . . .   15.11         27    28.1    96     CRMSCA  
     BURIED  . . . . . . . .   15.21         37    35.6   104     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   15.15        256    26.1   981     CRMSMC  
     SECONDARY STRUCTURE . .   14.06        128    30.7   417     CRMSMC  
     SURFACE . . . . . . . .   14.95        108    23.0   469     CRMSMC  
     BURIED  . . . . . . . .   15.29        148    28.9   512     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   746     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   634     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   349     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   375     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   371     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   15.15        256    16.6  1546     CRMSALL 
     SECONDARY STRUCTURE . .   14.06        128    18.7   685     CRMSALL 
     SURFACE . . . . . . . .   14.95        108    14.2   759     CRMSALL 
     BURIED  . . . . . . . .   15.29        148    18.8   787     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.114      1.000       0.500     64    32.0   200     ERRCA  
     SECONDARY STRUCTURE . .   12.699      1.000       0.500     32    38.1    84     ERRCA  
     SURFACE . . . . . . . .   14.031      1.000       0.500     27    28.1    96     ERRCA  
     BURIED  . . . . . . . .   14.174      1.000       0.500     37    35.6   104     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.083      1.000       0.500    256    26.1   981     ERRMC  
     SECONDARY STRUCTURE . .   12.707      1.000       0.500    128    30.7   417     ERRMC  
     SURFACE . . . . . . . .   13.815      1.000       0.500    108    23.0   469     ERRMC  
     BURIED  . . . . . . . .   14.278      1.000       0.500    148    28.9   512     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   746     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   634     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   349     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   375     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   371     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.083      1.000       0.500    256    16.6  1546     ERRALL 
     SECONDARY STRUCTURE . .   12.707      1.000       0.500    128    18.7   685     ERRALL 
     SURFACE . . . . . . . .   13.815      1.000       0.500    108    14.2   759     ERRALL 
     BURIED  . . . . . . . .   14.278      1.000       0.500    148    18.8   787     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         2         4        16      64     200   DISTCA 
CA  (P)      0.00      0.50      1.00      2.00      8.00             200   DISTCA 
CA  (RMS)    0.00      1.68      2.42      3.13      6.96                   DISTCA 
 
ALL (N)         0         7        11        18        68     256    1546   DISTALL 
ALL (P)      0.00      0.45      0.71      1.16      4.40            1546   DISTALL 
ALL (RMS)    0.00      1.70      2.19      3.04      7.24                   DISTALL 
 
 
 
 
END of the results output 
