 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 105 , MODEL 105 , TARGET 200 
#          The number of residues possible to evaluate: 105 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   164     M     C     C             1.00 
 SSP   165     Y     E     E             1.00 
 SSP   166     F     E     E             1.00 
 SSP   167     C     E     E             1.00 
 SSP   168     M     E     C             1.00 
 SSP   169     N     E     C             1.00 
 SSP   170     I     E     C             1.00 
 SSP   171     S     E     C             1.00 
 SSP   172     S     C     C             1.00 
 SSP   173     Q     E     C             1.00 
 SSP   174     G     C     C             1.00 
 SSP   175     D     C     C             1.00 
 SSP   176     G     C     C             1.00 
 SSP   177     A     C     C             1.00 
 SSP   178     C     E     C             1.00 
 SSP   179     V     E     C             1.00 
 SSP   180     L     E     C             1.00 
 SSP   181     L     E     C             1.00 
 SSP   182     R     E     C             1.00 
 SSP   183     A     E     C             1.00 
 SSP   184     L     E     C             1.00 
 SSP   185     E     E     C             1.00 
 SSP   186     P     E     H             1.00 
 SSP   187     L     E     H             1.00 
 SSP   188     E     E     H             1.00 
 SSP   189     G     C     C             1.00 
 SSP   190     L     H     C             1.00 
 SSP   191     E     H     H             1.00 
 SSP   192     T     H     H             1.00 
 SSP   193     M     H     H             1.00 
 SSP   194     R     H     C             1.00 
 SSP   195     Q     H     C             1.00 
 SSP   196     L     H     E             1.00 
 SSP   197     R     H     E             1.00 
 SSP   198     S     C     E             1.00 
 SSP   199     T     C     C             1.00 
 SSP  BREAK 
 SSP   208     V     C     C             1.00 
 SSP   209     L     C     C             1.00 
 SSP   210     K     C     H             1.00 
 SSP  BREAK 
 SSP   212     R     H     H             1.00 
 SSP   213     E     H     H             1.00 
 SSP   214     L     H     H             1.00 
 SSP   215     C     H     H             1.00 
 SSP   216     S     E     H             1.00 
 SSP   217     G     C     H             1.00 
 SSP   218     P     H     H             1.00 
 SSP   219     S     H     H             1.00 
 SSP   220     K     H     H             1.00 
 SSP   221     L     H     H             1.00 
 SSP   222     C     H     C             1.00 
 SSP   223     Q     H     C             1.00 
 SSP   224     A     H     C             1.00 
 SSP   225     L     C     E             1.00 
 SSP   226     A     C     E             1.00 
 SSP   227     I     C     E             1.00 
 SSP   228     N     C     C             1.00 
 SSP   229     K     H     C             1.00 
 SSP   230     S     H     H             1.00 
 SSP   231     F     H     H             1.00 
 SSP   232     D     C     H             1.00 
 SSP   233     Q     C     H             1.00 
 SSP   234     R     C     H             1.00 
 SSP   235     D     E     H             1.00 
 SSP   236     L     C     H             1.00 
 SSP   237     A     C     C             1.00 
 SSP   238     Q     C     C             1.00 
 SSP   239     D     C     C             1.00 
 SSP   240     E     C     C             1.00 
 SSP   241     A     C     C             1.00 
 SSP   242     V     E     C             1.00 
 SSP   243     W     E     C             1.00 
 SSP   244     L     E     E             1.00 
 SSP   245     E     E     E             1.00 
 SSP   246     R     C     C             1.00 
 SSP  BREAK 
 SSP   255     A     C     C             1.00 
 SSP   256     V     E     E             1.00 
 SSP   257     V     E     E             1.00 
 SSP   258     A     E     C             1.00 
 SSP   259     A     E     C             1.00 
 SSP   260     A     C     C             1.00 
 SSP   261     R     C     C             1.00 
 SSP   262     V     C     C             1.00 
 SSP   263     G     C     C             1.00 
 SSP   264     V     C     C             1.00 
 SSP  BREAK 
 SSP   271     A     H     C             1.00 
 SSP   272     R     C     C             1.00 
 SSP   273     K     C     C             1.00 
 SSP   274     P     C     C             1.00 
 SSP   275     L     C     H             1.00 
 SSP   276     R     E     H             1.00 
 SSP   277     F     E     H             1.00 
 SSP   278     Y     E     H             1.00 
 SSP   279     V     E     H             1.00 
 SSP   280     R     C     H             1.00 
 SSP   281     G     C     H             1.00 
 SSP   282     S     C     H             1.00 
 SSP   283     P     C     H             1.00 
 SSP   284     W     C     H             1.00 
 SSP   285     V     C     H             1.00 
 SSP   286     S     C     H             1.00 
 SSP   287     V     C     H             1.00 
 SSP   288     V     C     H             1.00 
 SSP   289     D     C     C             1.00 
 SSP   290     R     H     C             1.00 
 SSP   291     V     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              44.8      52.0     21.2     57.4     52.5 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        46.1      45.2     30.3     57.8     52.5 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           10              66.0              24.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     105    100.0     44.8 
 
 BIN  0.00 - 1.00      1.00     105    100.0     44.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 181 
 
# WARNING! TARGET 1546 atoms, MODEL 1255 atoms, 1156 common with TARGET 
           Number of atoms possible to evaluate: 420 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    89.01           39.2   171    43.3   395     ARMSMC  
     SECONDARY STRUCTURE . .    78.01           38.6    83    49.7   167     ARMSMC  
     SURFACE . . . . . . . .    90.81           40.5    74    39.6   187     ARMSMC  
     BURIED  . . . . . . . .    87.61           38.1    97    46.6   208     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   143     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   128     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    65     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    73     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    76     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    45     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    53     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    39     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    34     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    19     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    25     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    14     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    16     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     8     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     5     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  164 - 210  39   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    19    164 - 182      4.84    19.21 
  LCS LOCAL_SCORE:             47.01 
 
 FRAGMENT  2  212 - 264  45   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    17    223 - 239      4.88    18.99 
  LCS LOCAL_SCORE:             35.70 
 
 FRAGMENT  3  271 - 291  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    271 - 285      4.98     9.97 
  LCS LOCAL_SCORE:             66.89 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  164 - 210  39   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    164 - 170      1.58    18.53 
  LCS LOCAL_SCORE:             16.04 
 
 FRAGMENT  2  212 - 264  45   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    227 - 234      1.93    19.82 
  LONGEST_CONTINUOUS_SEGMENT     8    228 - 235      1.91    19.74 
  LCS LOCAL_SCORE:             14.62 
 
 FRAGMENT  3  271 - 291  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    271 - 275      0.57    24.30 
  LONGEST_CONTINUOUS_SEGMENT     5    279 - 283      1.81    14.84 
  LONGEST_CONTINUOUS_SEGMENT     5    282 - 286      1.43    17.70 
  LCS LOCAL_SCORE:             22.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  164 - 210  39   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    164 - 169      0.71    17.61 
  LCS LOCAL_SCORE:              9.86 
 
 FRAGMENT  2  212 - 264  45   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    217 - 222      0.28    16.61 
  LCS LOCAL_SCORE:              9.19 
 
 FRAGMENT  3  271 - 291  21   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    271 - 275      0.57    24.30 
  LCS LOCAL_SCORE:             19.50 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     164       M     6    7   19       C        0   3   3   3   3   4   4   6   7   8   8   8   8   8   9   9  13  18  20  21  
 LCS     165       Y     6    7   19       E        1   3   3   3   3   4   4   5   7   8   8  11  12  13  16  16  20  22  23  23  
 LCS     166       F     6    7   19       E        1   3   3   3   3   4   6   6   7   8   9  11  13  16  18  20  21  22  23  23  
 LCS     167       C     6    7   19       E        1   3   3   3   4   5   6   6   7   9  11  12  14  16  18  20  21  22  23  23  
 LCS     168       M     6    7   19       E        1   3   3   3   4   5   6   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     169       N     6    7   19       E        1   3   3   3   4   4   5   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     170       I     3    7   19       E        1   1   1   2   4   5   6   6   7   8   8   9  10  12  13  14  16  18  20  21  
 LCS     171       S     3    6   19       E        1   1   1   2   4   5   6   6   7   8   8   9  10  12  13  14  15  18  20  21  
 LCS     172       S     3    5   19       C        0   1   2   2   4   5   6   6   7   8   8   9  10  12  13  13  15  17  20  21  
 LCS     173       Q     3    6   19       E        1   1   2   2   3   4   6   6   7   8   8   8   8   8   9  12  13  17  17  20  
 LCS     174       G     3    6   19       C        1   1   2   2   4   5   6   6   7   8   8   9  10  12  13  14  15  18  20  21  
 LCS     175       D     4    6   19       C        2   2   2   2   3   4   6   6   7   8   8   9  10  12  13  13  15  17  20  21  
 LCS     176       G     4    6   19       C        2   2   2   2   4   5   6   6   7   8   8   9  10  12  13  14  15  18  20  21  
 LCS     177       A     4    6   19       C        2   2   2   2   4   5   6   6   7   8   8   9  10  12  13  14  15  18  20  21  
 LCS     178       C     4    6   19       E        2   2   2   2   4   5   6   6   7   8   8   9  10  12  13  14  15  18  20  21  
 LCS     179       V     3    6   19       E        1   1   2   2   4   5   6   6   7   8   8   9  10  12  13  14  15  18  20  21  
 LCS     180       L     3    6   19       E        1   1   2   2   2   2   3   4   6   7   7   7   8   8   9  10  12  16  16  17  
 LCS     181       L     3    6   19       E        1   1   2   2   2   2   3   4   5   6   6   7   8   8   9  10  12  12  13  13  
 LCS     182       R     3    6   19       E        1   1   2   2   2   2   3   4   5   6   6   7   7   8   9  10  12  12  13  13  
 LCS     183       A     3    6   18       E        1   1   2   2   2   2   3   4   4   6   6   7   7   8   9  10  12  12  13  13  
 LCS     184       L     4    4   18       E        1   2   2   2   3   3   4   5   5   6   6   7   7   8   9  10  12  12  13  13  
 LCS     185       E     4    4   18       E        1   2   2   2   3   3   4   5   5   6   6   7   7   8   9  10  12  12  13  13  
 LCS     186       P     4    4   18       E        1   2   2   2   2   3   4   5   5   6   6   7   7   8   9   9   9  10  11  13  
 LCS     187       L     4    4   18       E        1   2   2   2   3   3   4   5   5   6   6   7   7   8   9   9   9  10  11  12  
 LCS     188       E     3    4   18       E        1   1   1   2   3   3   4   5   5   6   7   8   8   8   9   9   9  10  13  13  
 LCS     189       G     3    6   18       C        0   1   1   2   2   3   3   4   5   6   6   8   8   8   9  10  10  11  12  13  
 LCS     190       L     5    6   18       H        2   2   2   2   3   3   4   5   5   6   7   8   8   9   9  10  10  14  16  17  
 LCS     191       E     5    6   18       H        2   2   2   2   3   5   6   8   8   8   9   9  10  10  11  16  19  21  22  23  
 LCS     192       T     5    6   18       H        2   2   2   2   3   3   4   5   5   6   7   8   9  10  12  14  14  16  16  21  
 LCS     193       M     5    6   18       H        2   2   2   2   3   3   4   5   5   6   7   8  10  12  14  17  20  21  22  23  
 LCS     194       R     5    6   18       H        2   2   2   3   4   5   6   8   8  10  11  12  14  16  18  20  21  22  23  23  
 LCS     195       Q     3    4   18       H        1   2   3   3   4   5   6   8   8   8   9  11  13  16  17  20  21  22  23  23  
 LCS     196       L     3    4   18       H        0   1   1   2   3   4   5   7   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     197       R     3    3   18       H        0   1   1   2   2   2   3   4   6   8  10  12  14  16  18  20  21  22  23  23  
 LCS     198       S     3    3   18       C        0   1   1   1   1   2   3   4   5   6   7   8   8   9  10  10  12  18  19  22  
 LCS     199       T     0    4   11       C        0   0   1   1   3   3   4   5   5   6   8   9   9  10  10  10  12  12  12  12  
 LCS    BREAK 
 LCS     208       V     3    4    5       C        1   1   1   1   4   4   4   5   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     209       L     3    4    5       C        1   1   1   1   4   4   4   4   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     210       K     3    4    5       C        1   1   1   1   4   4   4   5   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     211       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     212       R     5    7   12       H        1   2   2   3   4   4   4   5   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     213       E     5    7   12       H        1   2   2   3   4   4   4   5   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     214       L     5    7   12       H        1   2   2   3   4   4   4   5   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     215       C     5    7   12       H        1   2   2   3   4   4   4   4   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     216       S     5    7   12       E        1   2   2   3   4   4   4   5   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     217       G     6    7   13       C        3   3   3   3   3   4   4   4   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     218       P     6    7   14       H        3   3   3   3   3   4   4   4   6   7   8   9   9  10  10  10  12  12  12  13  
 LCS     219       S     6    6   14       H        3   3   3   3   3   4   4   4   6   7   8   9   9  10  10  10  12  12  12  13  
 LCS     220       K     6    6   14       H        3   3   3   3   3   4   4   5   6   7   8   9   9  10  10  10  12  12  12  12  
 LCS     221       L     6    6   16       H        3   3   3   3   3   4   4   5   6   7   8   9   9  10  10  10  14  15  20  22  
 LCS     222       C     6    6   16       H        3   3   3   3   3   4   4   5   6   7   8   9   9  10  10  10  12  15  21  23  
 LCS     223       Q     3    3   17       H        0   1   1   1   1   1   5   5   6   6   6  11  12  13  16  16  18  21  23  23  
 LCS     224       A     3    6   17       H        1   1   2   3   4   5   6   8   8   9  11  12  14  16  18  20  21  22  23  23  
 LCS     225       L     4    6   17       C        1   2   3   3   4   5   6   8   8  10  11  12  14  16  18  20  21  22  23  23  
 LCS     226       A     4    6   17       C        1   2   2   3   4   5   6   8   8   8   9   9  10  15  17  20  21  22  23  23  
 LCS     227       I     4    8   17       C        1   2   3   3   4   5   6   8   8   8   9  12  14  16  18  20  21  22  23  23  
 LCS     228       N     4    8   17       C        1   2   3   3   4   5   6   8   8   8   9   9  10  10  11  12  18  21  22  23  
 LCS     229       K     4    8   17       H        2   2   2   3   4   5   6   8   8   8   9   9  10  10  11  12  12  13  14  14  
 LCS     230       S     4    8   17       H        2   2   2   3   3   4   5   8   8   8   9   9  10  10  11  12  12  13  14  14  
 LCS     231       F     4    8   17       H        2   2   3   3   4   5   6   8   8   8   9  12  14  16  18  20  21  22  23  23  
 LCS     232       D     4    8   17       C        2   2   2   3   3   5   6   8   8   8   9  12  14  16  18  20  21  22  23  23  
 LCS     233       Q     4    8   17       C        1   2   2   3   4   5   6   8   8   8   9  12  14  16  18  20  21  22  23  23  
 LCS     234       R     4    8   17       C        1   2   3   3   4   5   6   8   8  10  11  12  14  16  18  20  21  22  23  23  
 LCS     235       D     3    8   17       E        1   1   2   2   4   4   6   8   8  10  11  12  14  16  18  20  21  22  23  23  
 LCS     236       L     3    6   17       C        1   1   2   3   4   5   6   8   8  10  11  12  14  16  18  20  21  22  23  23  
 LCS     237       A     3    6   17       C        1   1   1   2   4   4   5   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     238       Q     3    6   17       C        1   1   1   2   3   3   4   5   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     239       D     3    6   17       C        1   1   1   2   3   3   3   3   4   5   5   6  11  15  17  19  21  22  23  23  
 LCS     240       E     3    6   14       C        1   1   1   2   3   3   3   3   4   5   5   6   7   7   8  13  15  18  20  21  
 LCS     241       A     3    6   14       C        1   1   1   2   3   3   3   4   4   5   5   6   7   7  12  14  15  18  20  21  
 LCS     242       V     3    5   14       E        1   1   1   2   2   3   3   3   4   4   5   6   8   9  10  10  10  18  20  21  
 LCS     243       W     3    5   12       E        1   1   1   2   2   3   4   4   4   6   7   8   8  10  15  17  19  21  23  23  
 LCS     244       L     3    5   12       E        1   1   1   2   2   4   4   5   6   8   9  12  14  16  18  20  21  22  23  23  
 LCS     245       E     3    5   12       E        1   1   1   2   2   3   4   5   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     246       R     3    4   11       C        1   1   1   2   4   4   5   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS    BREAK 
 LCS     255       A     5    7   11       C        2   2   2   2   4   5   6   6   6   6   6   7   7   8  10  10  11  13  16  17  
 LCS     256       V     5    7   11       E        2   2   2   2   4   5   6   6   6   6   6   7   9  10  12  14  14  16  16  17  
 LCS     257       V     5    7   11       E        2   2   2   2   4   5   6   6   6   6   6   7   7  10  12  14  14  16  16  17  
 LCS     258       A     5    7   11       E        2   2   2   2   4   5   6   6   6   6   6   7   9  10  12  14  14  16  16  17  
 LCS     259       A     5    7   11       E        1   2   2   2   4   5   6   6   6   6   6   7   9  10  12  14  14  16  16  17  
 LCS     260       A     4    7   11       C        1   2   2   2   3   4   6   6   6   6   6   7   7   8  12  14  14  16  16  17  
 LCS     261       R     4    7   11       C        1   2   2   2   3   5   6   6   6   9  11  12  14  16  18  20  21  22  23  23  
 LCS     262       V     4    7   11       C        1   2   2   2   4   5   6   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     263       G     3    7   11       C        1   1   2   3   4   5   6   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     264       V     3    7   11       C        1   2   2   3   4   5   6   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     265       G     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     266       H     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     267       A     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     268       G     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     269       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     270       W     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     271       A     5    5   15       H        2   2   2   2   4   5   6   6   6   6   6   7   9  12  15  20  21  22  23  23  
 LCS     272       R     5    5   15       C        2   2   2   2   4   5   6   6   6   7   8   9  12  14  18  20  21  22  23  23  
 LCS     273       K     5    5   15       C        2   2   2   2   3   3   4   4   4   5   5   7   9  15  18  20  21  22  23  23  
 LCS     274       P     5    5   15       C        2   2   2   2   3   3   4   5   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     275       L     5    5   15       C        1   2   2   2   3   3   3   5   6   6   9  11  14  16  18  20  21  22  23  23  
 LCS     276       R     3    4   15       E        1   1   2   2   2   2   4   5   6   6   9  12  14  16  18  20  21  22  23  23  
 LCS     277       F     3    4   15       E        1   1   2   3   3   4   5   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     278       Y     3    4   15       E        1   1   2   2   4   4   5   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     279       V     4    5   15       E        1   2   2   2   3   3   3   5   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     280       R     4    5   15       C        1   2   2   2   3   4   5   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     281       G     4    5   15       C        1   2   2   2   3   3   3   4   5   6   7   8   9  10  13  15  18  21  21  23  
 LCS     282       S     4    5   15       C        2   2   2   2   3   3   3   4   5   6   8  11  13  16  18  20  21  22  23  23  
 LCS     283       P     4    5   15       C        2   2   2   2   2   3   5   6   7  10  11  12  14  16  18  20  21  22  23  23  
 LCS     284       W     4    5   15       C        2   2   2   2   2   3   4   5   6   9  11  12  14  16  18  20  21  22  23  23  
 LCS     285       V     4    5   15       C        2   2   2   2   2   3   3   4   5   6   7   9  12  15  18  20  21  22  23  23  
 LCS     286       S     4    5   13       C        1   1   2   2   3   3   3   4   6   7   8  10  12  13  16  20  21  22  23  23  
 LCS     287       V     4    4   12       C        1   1   2   2   3   3   3   4   6   7   8   9  10  12  13  14  15  18  20  21  
 LCS     288       V     4    4   12       C        1   2   2   2   2   3   3   4   4   6   7   8   8   8   8  12  12  13  14  14  
 LCS     289       D     4    4   11       C        1   2   2   2   2   3   3   4   4   4   5   5   5   6   7   9  10  11  12  12  
 LCS     290       R     4    4   11       H        1   2   2   2   2   2   3   4   4   4   4   5   5   6   7   9  10  11  12  12  
 LCS     291       V     4    4   11       H        0   2   2   2   2   3   3   4   4   4   4   5   5   6   7   9  10  11  12  12  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.05 
 
 NUMBER_OF_CA_Tg:  200      NUMBER_OF_CA_Pr:  105      PERCENT_OF_CA:  52.50  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       6       6       6       7       9      11      13      16      16      21      23      24      29      33      36      40      42      44      46      47  
 GDT PERCENT_OF_CA_Pr    5.71    5.71    5.71    6.67    8.57   10.48   12.38   15.24   15.24   20.00   21.90   22.86   27.62   31.43   34.29   38.10   40.00   41.90   43.81   44.76 
 GDT PERCENT_OF_CA_Tg    3.00    3.00    3.00    3.50    4.50    5.50    6.50    8.00    8.00   10.50   11.50   12.00   14.50   16.50   18.00   20.00   21.00   22.00   23.00   23.50 
 GDT FRAGMENT: Beg-End 217-222 217-222 217-222 195-236 194-236 255-272 194-236 191-236 191-236 168-283 167-283 167-283 167-284 166-284 166-285 166-285 166-285 165-286 165-286 165-286 
 GDT RMS_LOCAL           0.28    0.28    0.28    1.12    1.73    2.07    2.37    2.83    2.83    4.03    4.22    4.33    4.97    5.40    5.61    5.87    6.06    6.26    6.47    6.57 
 GDT RMS_ALL_CA         21.45   21.45   21.45   22.35   22.64   19.34   23.80   24.16   24.16   16.01   16.00   15.98   16.08   16.21   16.14   16.18   16.21   16.27   16.35   16.38 
 
 
 TEST (CA)  RMS =  15.50               (Number of atoms:  105) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   15.50        105    52.5   200     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1477                            CRMSCA  
     SECONDARY STRUCTURE . .   14.04         46    54.8    84     CRMSCA  
     SURFACE . . . . . . . .   17.46         49    51.0    96     CRMSCA  
     BURIED  . . . . . . . .   13.57         56    53.8   104     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   15.29        420    42.8   981     CRMSMC  
     SECONDARY STRUCTURE . .   13.81        184    44.1   417     CRMSMC  
     SURFACE . . . . . . . .   17.16        196    41.8   469     CRMSMC  
     BURIED  . . . . . . . .   13.44        224    43.8   512     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   746     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   634     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   349     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   375     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   371     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   15.29        420    27.2  1546     CRMSALL 
     SECONDARY STRUCTURE . .   13.81        184    26.9   685     CRMSALL 
     SURFACE . . . . . . . .   17.16        196    25.8   759     CRMSALL 
     BURIED  . . . . . . . .   13.44        224    28.5   787     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.843      1.000       0.500    105    52.5   200     ERRCA  
     SECONDARY STRUCTURE . .   12.899      1.000       0.500     46    54.8    84     ERRCA  
     SURFACE . . . . . . . .   15.691      1.000       0.500     49    51.0    96     ERRCA  
     BURIED  . . . . . . . .   12.226      1.000       0.500     56    53.8   104     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.643      1.000       0.500    420    42.8   981     ERRMC  
     SECONDARY STRUCTURE . .   12.633      1.000       0.500    184    44.1   417     ERRMC  
     SURFACE . . . . . . . .   15.390      1.000       0.500    196    41.8   469     ERRMC  
     BURIED  . . . . . . . .   12.115      1.000       0.500    224    43.8   512     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   746     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   634     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   349     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   375     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   371     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   13.643      1.000       0.500    420    27.2  1546     ERRALL 
     SECONDARY STRUCTURE . .   12.633      1.000       0.500    184    26.9   685     ERRALL 
     SURFACE . . . . . . . .   15.390      1.000       0.500    196    25.8   759     ERRALL 
     BURIED  . . . . . . . .   12.115      1.000       0.500    224    28.5   787     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         1         8        38     105     200   DISTCA 
CA  (P)      0.00      0.00      0.50      4.00     19.00             200   DISTCA 
CA  (RMS)    0.00      0.00      2.81      4.00      7.32                   DISTCA 
 
ALL (N)         0         0         5        28       145     420    1546   DISTALL 
ALL (P)      0.00      0.00      0.32      1.81      9.38            1546   DISTALL 
ALL (RMS)    0.00      0.00      2.54      3.74      7.08                   DISTALL 
 
 
 
 
END of the results output 
