 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 0 0 , MODEL 0 , TARGET 69 
 
# WARNING! TARGET 1062 atoms, MODEL 621 atoms, 69 common with TARGET 
           Number of atoms possible to evaluate: 69 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   136     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    72     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   116     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    20     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    59     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    51     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    32     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    52     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    47     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    36     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    26     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    43     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     4     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    17     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    12     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    17     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     6     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     3     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   72 - 140  69   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    69     72 - 140      4.31     4.31 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   72 - 140  69   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    17     72 - 88       1.84    11.09 
  LCS LOCAL_SCORE:             22.79 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   72 - 140  69   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     92 - 104      0.87     5.83 
  LCS LOCAL_SCORE:             12.71 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      72       P     3   17   69       -        0   8  14  21  23  30  43  66  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      73       G     4   17   69       -        4   5  14  21  23  27  37  55  73  79  86  89  95  98  98 100 100 100 100 100  
 LCS      74       D     9   17   69       -        4   5  15  21  24  31  37  50  62  75  82  89  95  98  98 100 100 100 100 100  
 LCS      75       P     9   17   69       -        5  10  15  21  24  31  37  49  62  68  79  85  95  98  98 100 100 100 100 100  
 LCS      76       E     9   17   69       -        5   5  15  21  24  28  36  44  52  63  71  81  86  98  98 100 100 100 100 100  
 LCS      77       E     9   17   69       -        7  10  15  21  24  28  36  49  62  75  85  89  95  98  98 100 100 100 100 100  
 LCS      78       F     9   17   69       -        7  10  15  21  24  31  40  65  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      79       V     9   17   69       -        7  10  15  21  24  31  37  49  62  73  82  89  95  98  98 100 100 100 100 100  
 LCS      80       K     9   17   69       -        7  10  15  21  24  28  36  44  55  66  82  89  95  98  98 100 100 100 100 100  
 LCS      81       G     9   17   69       -        7  10  15  21  24  28  40  66  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      82       F     9   17   69       -        5  10  15  21  24  44  60  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      83       Q     9   17   69       -        5  10  15  21  24  31  40  66  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      84       V     8   17   69       -        4  10  15  21  24  31  39  65  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      85       F     5   17   69       -        4   5  14  20  24  31  40  66  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      86       D     5   17   69       -        4  13  18  24  42  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      87       K     4   17   69       -        4   5  10  21  24  31  44  66  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      88       D     4   17   69       -        4   8  17  27  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      89       A     4   16   69       -        4   4   5  11  21  31  46  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      90       T     5   16   69       -        4  13  18  27  42  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      91       G     5   16   69       -        4   7  11  18  23  47  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      92       M    13   16   69       -        7  13  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      93       I    13   16   69       -       11  17  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      94       G    13   16   69       -       11  17  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      95       V    13   16   69       -        8  15  18  28  40  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      96       G    13   16   69       -       11  17  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      97       E    13   16   69       -       11  17  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      98       L    13   16   69       -       11  17  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS      99       R    13   16   69       -       11  17  24  31  42  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     100       Y    13   16   69       -       11  17  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     101       V    13   16   69       -       10  17  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     102       L    13   16   69       -       10  17  24  31  42  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     103       T    13   16   69       -       10  17  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     104       S    13   16   69       -       10  17  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     105       L     9   16   69       -        4   7  11  30  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     106       G     4   15   69       -        4   7   7  14  23  36  59  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     107       E     4   12   69       -        4   7   7  15  24  42  47  68  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     108       K     4   16   69       -        4   5  18  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     109       L    11   16   69       -        4  11  15  18  36  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     110       S    11   16   69       -        8  14  15  18  30  46  60  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     111       N    11   16   69       -       10  14  15  30  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     112       E    11   16   69       -       10  14  21  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     113       E    11   16   69       -       10  14  15  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     114       M    11   16   69       -       10  14  15  28  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     115       D    11   16   69       -       10  14  18  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     116       E    11   16   69       -       10  14  18  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     117       L    11   16   69       -       10  14  15  28  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     118       L    11   16   69       -       10  14  15  23  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     119       K    11   16   69       -        7  14  15  20  42  50  60  69  76  85  86  89  95  98  98 100 100 100 100 100  
 LCS     120       G     4   16   69       -        4  11  20  31  42  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     121       V     4   16   69       -        4   7  18  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     122       P     4   16   69       -        4  13  15  18  18  28  43  52  63  75  85  88  95  98  98 100 100 100 100 100  
 LCS     123       V     3   16   69       -        7  14  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     124       K     3    8   69       -        4   5   7  23  36  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     125       D     3    8   69       -        4   4   7  10  13  21  33  40  47  53  65  75  78  86  97 100 100 100 100 100  
 LCS     126       G     3   15   69       -        4   5   7  17  21  31  37  47  57  71  82  89  95  98  98 100 100 100 100 100  
 LCS     127       M     4   15   69       -       11  17  20  30  40  50  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     128       V     4   15   69       -        4   5  10  21  40  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     129       N     4   15   69       -        4   8  21  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     130       Y    11   15   69       -        7  14  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     131       H    11   15   69       -        7  14  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     132       D    11   15   69       -       13  14  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     133       F    11   15   69       -       13  14  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     134       V    11   15   69       -       13  14  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     135       Q    11   15   69       -       13  14  24  31  43  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     136       M    11   15   69       -       13  14  24  31  42  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     137       I    11   15   69       -       13  14  21  30  40  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     138       L    11   15   69       -       13  14  21  28  40  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     139       A    11   15   69       -       13  14  20  28  40  52  65  69  81  85  86  89  95  98  98 100 100 100 100 100  
 LCS     140       N    11   15   69       -       13  14  17  26  30  43  53  63  73  85  86  89  95  98  98 100 100 100 100 100  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  12.71 
 
 NUMBER_OF_CA_Tg:   69      NUMBER_OF_CA_Pr:   69      PERCENT_OF_CA: 100.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      12      17      22      30      36      45      48      56      59      60      62      66      68      68      69      69      69      69      69  
 GDT PERCENT_OF_CA_Pr   13.04   17.39   24.64   31.88   43.48   52.17   65.22   69.57   81.16   85.51   86.96   89.86   95.65   98.55   98.55  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg   13.04   17.39   24.64   31.88   43.48   52.17   65.22   69.57   81.16   85.51   86.96   89.86   95.65   98.55   98.55  100.00  100.00  100.00  100.00  100.00 
 GDT FRAGMENT: Beg-End 132-140  93-127  92-134  92-136  88-135  86-136  86-139  82-139  72-139  72-140  72-140  72-140  72-140  72-140  72-140  72-140  72-140  72-140  72-140  72-140 
 GDT RMS_LOCAL           0.34    0.53    1.05    1.32    1.85    2.07    2.39    2.59    3.28    3.40    3.51    3.68    4.02    4.23    4.23    4.31    4.31    4.31    4.31    4.31 
 GDT RMS_ALL_CA          8.11    5.88    5.98    5.81    5.92    5.67    5.52    5.33    4.65    4.60    4.52    4.44    4.34    4.31    4.31    4.31    4.31    4.31    4.31    4.31 
 
 
 TEST (CA)  RMS =   4.31               (Number of atoms:   69) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    4.31         69   100.0    69     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0624                            CRMSCA  
     SECONDARY STRUCTURE . .    4.38         36   100.0    36     CRMSCA  
     SURFACE . . . . . . . .    4.38         59   100.0    59     CRMSCA  
     BURIED  . . . . . . . .    3.84         10   100.0    10     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    4.31         69    20.5   337     CRMSMC  
     SECONDARY STRUCTURE . .    4.38         36    20.5   176     CRMSMC  
     SURFACE . . . . . . . .    4.38         59    20.3   290     CRMSMC  
     BURIED  . . . . . . . .    3.84         10    21.3    47     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   786     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   742     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   429     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   689     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0    97     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    4.31         69     6.5  1062     CRMSALL 
     SECONDARY STRUCTURE . .    4.38         36     6.3   573     CRMSALL 
     SURFACE . . . . . . . .    4.38         59     6.4   925     CRMSALL 
     BURIED  . . . . . . . .    3.84         10     7.3   137     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.039      1.000       0.500     69   100.0    69     ERRCA  
     SECONDARY STRUCTURE . .    4.116      1.000       0.500     36   100.0    36     ERRCA  
     SURFACE . . . . . . . .    4.090      1.000       0.500     59   100.0    59     ERRCA  
     BURIED  . . . . . . . .    3.738      1.000       0.500     10   100.0    10     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.039      1.000       0.500     69    20.5   337     ERRMC  
     SECONDARY STRUCTURE . .    4.116      1.000       0.500     36    20.5   176     ERRMC  
     SURFACE . . . . . . . .    4.090      1.000       0.500     59    20.3   290     ERRMC  
     BURIED  . . . . . . . .    3.738      1.000       0.500     10    21.3    47     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   786     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   742     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   429     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   689     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0    97     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.039      1.000       0.500     69     6.5  1062     ERRALL 
     SECONDARY STRUCTURE . .    4.116      1.000       0.500     36     6.3   573     ERRALL 
     SURFACE . . . . . . . .    4.090      1.000       0.500     59     6.4   925     ERRALL 
     BURIED  . . . . . . . .    3.738      1.000       0.500     10     7.3   137     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         6        12        55        69      69      69   DISTCA 
CA  (P)      0.00      8.70     17.39     79.71    100.00              69   DISTCA 
CA  (RMS)    0.00      1.61      2.25      3.55      4.31                   DISTCA 
 
ALL (N)         0         6        12        55        69      69    1062   DISTALL 
ALL (P)      0.00      0.56      1.13      5.18      6.50            1062   DISTALL 
ALL (RMS)    0.00      1.61      2.25      3.55      4.31                   DISTALL 
 
 
 
 
END of the results output 
