 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 0 0 , MODEL 0 , TARGET 71 
 
# WARNING! TARGET 1087 atoms, MODEL 612 atoms, 76 common with TARGET 
           Number of atoms possible to evaluate: 70 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   140     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    64     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   110     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    30     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    62     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    60     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    28     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    49     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    13     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    37     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    23     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    37     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    17     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    13     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    11     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     1     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     6     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     3     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     6     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    2 - 71   70   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    67      2 - 68       4.87     5.23 
  LONGEST_CONTINUOUS_SEGMENT    67      3 - 69       4.96     5.21 
  LCS LOCAL_SCORE:             93.96 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    2 - 71   70   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    34      6 - 39       1.99     6.35 
  LCS LOCAL_SCORE:             34.12 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    2 - 71   70   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    27      7 - 33       1.00     6.09 
  LCS LOCAL_SCORE:             22.80 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       2       T     6    7   67       -        5   7   8  14  15  25  39  42  46  60  61  74  81  83  84  85  88  90  92  97  
 LCS       3       D     6    7   67       -        5   7   8   9   9  18  36  49  57  60  71  78  81  83  84  85  88  90  92  97  
 LCS       4       D     6   33   67       -        5   7   8  14  47  53  64  70  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS       5       S     6   33   67       -        5   7   8  18  25  33  57  64  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS       6       P    18   34   67       -        5   8  14  23  46  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS       7       Y    27   34   67       -       12  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS       8       K    27   34   67       -       15  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS       9       Q    27   34   67       -       15  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      10       A    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      11       F    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      12       S    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      13       L    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      14       F    27   34   67       -       15  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      15       D    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      16       R    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      17       H    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      18       G    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      19       T    27   34   67       -       15  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      20       G    27   34   67       -        5  28  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      21       R    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      22       I    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      23       P    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      24       K    27   34   67       -        7  23  38  43  49  54  64  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      25       T    27   34   67       -        7  16  30  42  46  54  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      26       S    27   34   67       -        8  16  33  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      27       I    27   34   67       -        7  16  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      28       G    27   34   67       -        8  16  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      29       D    27   34   67       -        8  28  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      30       L    27   34   67       -       12  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      31       L    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      32       R    27   34   67       -       16  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      33       A    27   34   67       -       14  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      34       C    18   34   67       -        5  15  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      35       G    11   34   67       -        7   8  19  36  49  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      36       Q    11   34   67       -        7  12  19  35  49  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      37       N    11   34   67       -        7   8  19  23  32  40  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      38       P    11   34   67       -        7  12  19  26  47  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      39       T    11   34   67       -        7  12  19  26  32  49  66  71  76  78  80  80  81  83  83  85  88  90  92  94  
 LCS      40       L    11   22   67       -        9  12  19  26  32  43  61  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      41       A    11   22   67       -        9  12  19  26  38  52  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      42       E    11   22   67       -        9  12  19  26  38  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      43       I    11   22   67       -        9  12  19  26  38  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      44       T    11   22   67       -        9  12  19  26  36  49  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      45       E    11   22   67       -        9  12  19  26  36  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      46       I    11   22   67       -        9  12  19  26  47  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      47       E     4    4   67       -        4   4   5   5   5   7   7   7   7   7  15  21  28  40  66  69  77  85  91  97  
 LCS      48       S     4    4   67       -        4   4   5   5   5   7   9  11  12  21  54  63  63  67  74  80  85  87  91  97  
 LCS      49       T     4    5   67       -        4   5   5   5   5   9  19  26  32  43  60  63  66  73  80  84  85  88  92  97  
 LCS      50       L     4    5   67       -        4   5   5   5   5   8   9  15  22  30  47  56  63  73  77  81  81  87  90  97  
 LCS      51       P     4    5   67       -        4   5   5   7  15  22  29  39  57  66  74  78  78  81  83  84  88  90  92  97  
 LCS      52       A     4   15   67       -        4   5  22  38  46  50  57  67  74  78  80  80  81  83  84  85  88  90  92  97  
 LCS      53       E     4   15   67       -        8  26  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      54       V    12   15   67       -        5  25  38  45  50  54  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      55       D    12   15   67       -        8  29  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      56       M    12   15   67       -        9  28  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      57       E    12   15   67       -       12  28  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      58       Q    12   15   67       -        9  23  36  43  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      59       F    12   15   67       -       12  28  38  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      60       L    12   15   67       -        8  23  36  45  50  57  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      61       Q    12   15   67       -        8  15  30  40  50  53  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      62       V    12   15   67       -        8  16  32  42  50  53  66  71  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      63       L    12   15   67       -        8  16  23  39  47  53  57  70  76  78  80  80  81  83  84  85  88  90  92  97  
 LCS      64       N    12   15   67       -        8  14  21  28  42  50  56  64  73  78  80  80  81  83  84  85  88  90  92  97  
 LCS      65       R    12   15   67       -        7  14  18  26  32  43  53  59  67  73  80  80  81  83  84  85  88  90  92  97  
 LCS      66       P     4   15   67       -        5   5   7  11  15  23  32  40  46  52  59  63  69  74  77  83  88  90  92  97  
 LCS      67       N     4   14   67       -        5   5   7  11  15  21  23  30  39  50  59  63  69  74  77  80  84  90  92  97  
 LCS      68       G     4    5   67       -        4   5   5   9  16  32  39  43  50  54  63  66  71  74  84  85  88  90  92  97  
 LCS      69       F     4    5   67       -        4   5   5   5   5   7   7   8  15  15  21  32  60  69  74  77  83  90  92  97  
 LCS      70       D     4    5   24       -        4   5   8  16  26  33  39  43  49  56  60  66  71  74  80  85  88  90  92  97  
 LCS      71       M     4    5   24       -        4   5   5   5   5  16  25  40  50  53  63  64  70  74  84  85  88  90  92  97  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  22.16 
 
 NUMBER_OF_CA_Tg:   71      NUMBER_OF_CA_Pr:   70      PERCENT_OF_CA:  98.59  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      12      21      27      32      36      41      47      51      54      56      57      57      58      59      60      61      63      64      66      69  
 GDT PERCENT_OF_CA_Pr   17.14   30.00   38.57   45.71   51.43   58.57   67.14   72.86   77.14   80.00   81.43   81.43   82.86   84.29   85.71   87.14   90.00   91.43   94.29   98.57 
 GDT PERCENT_OF_CA_Tg   16.90   29.58   38.03   45.07   50.70   57.75   66.20   71.83   76.06   78.87   80.28   80.28   81.69   83.10   84.51   85.92   88.73   90.14   92.96   97.18 
 GDT FRAGMENT: Beg-End  10-32    7-55    7-55    7-59    7-62    6-60    6-62    6-62    4-63    4-64    4-65    4-65    3-65    2-65    2-71    2-71    2-71    2-71    2-71    2-71  
 GDT RMS_LOCAL           0.34    0.59    0.89    1.13    1.40    2.03    2.26    2.44    2.61    2.75    2.87    2.87    3.03    3.21    3.21    3.66    4.00    4.35    4.53    5.10 
 GDT RMS_ALL_CA          5.93    5.73    5.97    5.64    5.41    5.79    5.80    5.92    5.79    5.72    5.65    5.65    5.57    5.49    5.49    5.34    5.26    5.22    5.19    5.16 
 
 
 TEST (CA)  RMS =   5.16               (Number of atoms:   70) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    5.16         70    98.6    71     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0737                            CRMSCA  
     SECONDARY STRUCTURE . .    3.79         32   100.0    32     CRMSCA  
     SURFACE . . . . . . . .    5.48         55    98.2    56     CRMSCA  
     BURIED  . . . . . . . .    3.76         15   100.0    15     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    5.16         70    20.0   350     CRMSMC  
     SECONDARY STRUCTURE . .    3.79         32    20.1   159     CRMSMC  
     SURFACE . . . . . . . .    5.48         55    19.9   276     CRMSMC  
     BURIED  . . . . . . . .    3.76         15    20.3    74     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   803     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   767     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   394     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   624     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   179     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    5.16         70     6.4  1087     CRMSALL 
     SECONDARY STRUCTURE . .    3.79         32     6.1   522     CRMSALL 
     SURFACE . . . . . . . .    5.48         55     6.5   848     CRMSALL 
     BURIED  . . . . . . . .    3.76         15     6.3   239     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.159      1.000       0.500     70    98.6    71     ERRCA  
     SECONDARY STRUCTURE . .    3.030      1.000       0.500     32   100.0    32     ERRCA  
     SURFACE . . . . . . . .    4.528      1.000       0.500     55    98.2    56     ERRCA  
     BURIED  . . . . . . . .    2.806      1.000       0.500     15   100.0    15     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.159      1.000       0.500     70    20.0   350     ERRMC  
     SECONDARY STRUCTURE . .    3.030      1.000       0.500     32    20.1   159     ERRMC  
     SURFACE . . . . . . . .    4.528      1.000       0.500     55    19.9   276     ERRMC  
     BURIED  . . . . . . . .    2.806      1.000       0.500     15    20.3    74     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   803     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   767     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   394     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   624     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   179     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.159      1.000       0.500     70     6.4  1087     ERRALL 
     SECONDARY STRUCTURE . .    3.030      1.000       0.500     32     6.1   522     ERRALL 
     SURFACE . . . . . . . .    4.528      1.000       0.500     55     6.5   848     ERRALL 
     BURIED  . . . . . . . .    2.806      1.000       0.500     15     6.3   239     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         2        23        37        45        65      70      71   DISTCA 
CA  (P)      2.82     32.39     52.11     63.38     91.55              71   DISTCA 
CA  (RMS)    0.89      1.47      1.90      2.39      4.40                   DISTCA 
 
ALL (N)         2        23        37        45        65      70    1087   DISTALL 
ALL (P)      0.18      2.12      3.40      4.14      5.98            1087   DISTALL 
ALL (RMS)    0.89      1.47      1.90      2.39      4.40                   DISTALL 
 
 
 
 
END of the results output 
