 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 119 , MODEL 119 , TARGET 140 
#          The number of residues possible to evaluate: 119 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     1     S     C     C             1.00 
 SSP     2     T     C     C             1.00 
 SSP     3     D     C     C             1.00 
 SSP     4     D     C     C             1.00 
 SSP     5     S     C     C             1.00 
 SSP     6     P     C     C             1.00 
 SSP     7     Y     C     C             1.00 
 SSP     8     K     H     C             1.00 
 SSP     9     Q     H     C             1.00 
 SSP    10     A     H     E             1.00 
 SSP    11     F     H     E             1.00 
 SSP    12     S     H     E             1.00 
 SSP    13     L     H     E             1.00 
 SSP    14     F     C     E             1.00 
 SSP    15     D     C     C             1.00 
 SSP    16     R     C     C             1.00 
 SSP    17     H     C     C             1.00 
 SSP    18     G     C     C             1.00 
 SSP    19     T     C     C             1.00 
 SSP    20     G     C     C             1.00 
 SSP    21     R     E     C             1.00 
 SSP    22     I     E     C             1.00 
 SSP  BREAK 
 SSP    26     S     H     C             1.00 
 SSP    27     I     H     H             1.00 
 SSP    28     G     H     H             1.00 
 SSP    29     D     H     H             1.00 
 SSP    30     L     H     H             1.00 
 SSP    31     L     H     H             1.00 
 SSP    32     R     H     H             1.00 
 SSP    33     A     H     H             1.00 
 SSP    34     C     C     H             1.00 
 SSP    35     G     C     H             1.00 
 SSP    36     Q     C     C             1.00 
 SSP    37     N     C     C             1.00 
 SSP    38     P     C     C             1.00 
 SSP    39     T     C     C             1.00 
 SSP    40     L     H     E             1.00 
 SSP    41     A     H     E             1.00 
 SSP    42     E     H     E             1.00 
 SSP    43     I     H     E             1.00 
 SSP    44     T     H     E             1.00 
 SSP    45     E     H     C             1.00 
 SSP    46     I     H     C             1.00 
 SSP    47     E     H     C             1.00 
 SSP    48     S     C     C             1.00 
 SSP    49     T     C     C             1.00 
 SSP    50     L     C     C             1.00 
 SSP    51     P     C     H             1.00 
 SSP    52     A     C     H             1.00 
 SSP    53     E     C     H             1.00 
 SSP    54     V     E     H             1.00 
 SSP    55     D     E     H             1.00 
 SSP    56     M     H     H             1.00 
 SSP    57     E     H     C             1.00 
 SSP    58     Q     H     C             1.00 
 SSP    59     F     H     C             1.00 
 SSP    60     L     H     C             1.00 
 SSP    61     Q     H     C             1.00 
 SSP    62     V     H     C             1.00 
 SSP    63     L     H     C             1.00 
 SSP  BREAK 
 SSP    68     G     C     C             1.00 
 SSP    69     F     C     E             1.00 
 SSP    70     D     C     C             1.00 
 SSP    71     M     C     C             1.00 
 SSP    72     P     C     C             1.00 
 SSP    73     G     C     C             1.00 
 SSP  BREAK 
 SSP    77     E     H     C             1.00 
 SSP    78     F     H     H             1.00 
 SSP    79     V     H     H             1.00 
 SSP    80     K     H     H             1.00 
 SSP    81     G     H     H             1.00 
 SSP    82     F     H     H             1.00 
 SSP    83     Q     C     H             1.00 
 SSP    84     V     C     H             1.00 
 SSP    85     F     C     C             1.00 
 SSP  BREAK 
 SSP    89     A     C     C             1.00 
 SSP    90     T     C     C             1.00 
 SSP    91     G     C     C             1.00 
 SSP    92     M     C     E             1.00 
 SSP    93     I     C     E             1.00 
 SSP    94     G     C     E             1.00 
 SSP    95     V     H     E             1.00 
 SSP    96     G     H     E             1.00 
 SSP    97     E     H     C             1.00 
 SSP    98     L     H     H             1.00 
 SSP    99     R     H     H             1.00 
 SSP   100     Y     H     H             1.00 
 SSP   101     V     H     C             1.00 
 SSP   102     L     H     C             1.00 
 SSP  BREAK 
 SSP   106     G     H     C             1.00 
 SSP   107     E     C     C             1.00 
 SSP   108     K     C     C             1.00 
 SSP   109     L     C     H             1.00 
 SSP   110     S     C     H             1.00 
 SSP   111     N     H     H             1.00 
 SSP   112     E     H     H             1.00 
 SSP   113     E     H     H             1.00 
 SSP   114     M     H     H             1.00 
 SSP   115     D     H     H             1.00 
 SSP   116     E     H     H             1.00 
 SSP   117     L     H     H             1.00 
 SSP   118     L     H     H             1.00 
 SSP   119     K     H     H             1.00 
 SSP   120     G     H     H             1.00 
 SSP   121     V     C     C             1.00 
 SSP  BREAK 
 SSP   127     M     C     C             1.00 
 SSP   128     V     C     H             1.00 
 SSP   129     N     C     H             1.00 
 SSP   130     Y     C     H             1.00 
 SSP   131     H     C     H             1.00 
 SSP   132     D     H     C             1.00 
 SSP   133     F     H     C             1.00 
 SSP   134     V     H     E             1.00 
 SSP   135     Q     H     E             1.00 
 SSP   136     M     H     E             1.00 
 SSP   137     I     H     E             1.00 
 SSP   138     L     C     E             1.00 
 SSP   139     A     C     E             1.00 
 SSP   140     N     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              50.4      42.6      0.0     63.0     85.0 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        56.5      47.9      0.0     69.0     85.0 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           10              46.0              44.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     119    100.0     50.4 
 
 BIN  0.00 - 1.00      1.00     119    100.0     50.4 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 127 
 
# WARNING! TARGET 2149 atoms, MODEL 638 atoms, 638 common with TARGET 
           Number of atoms possible to evaluate: 476 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    85.48           42.0   224    80.6   278     ARMSMC  
     SECONDARY STRUCTURE . .    79.28           53.8   117    86.0   136     ARMSMC  
     SURFACE . . . . . . . .    84.60           43.3   180    78.9   228     ARMSMC  
     BURIED  . . . . . . . .    88.96           36.4    44    88.0    50     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   121     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   111     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    60     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   101     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    95     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    73     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    49     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    80     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    15     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    36     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    30     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    23     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    12     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     6     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    1 - 22   22   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13      1 - 13       4.65    11.37 
  LONGEST_CONTINUOUS_SEGMENT    13      9 - 21       4.51     7.49 
  LONGEST_CONTINUOUS_SEGMENT    13     10 - 22       4.67     9.75 
  LCS LOCAL_SCORE:             59.09 
 
 FRAGMENT  2   26 - 63   38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    19     40 - 58       4.99     8.86 
  LONGEST_CONTINUOUS_SEGMENT    19     41 - 59       4.82     8.90 
  LONGEST_CONTINUOUS_SEGMENT    19     42 - 60       4.87     9.92 
  LCS LOCAL_SCORE:             47.92 
 
 FRAGMENT  3   68 - 73   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     68 - 73       2.78     2.78 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   77 - 85   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     77 - 85       1.29     1.29 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   89 - 102  14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14     89 - 102      3.33     3.33 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  106 - 121  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    106 - 121      3.79     3.79 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  7  127 - 140  14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    127 - 139      4.98     5.24 
  LCS LOCAL_SCORE:             92.35 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    1 - 22   22   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     13 - 19       1.95     8.16 
  LONGEST_CONTINUOUS_SEGMENT     7     14 - 20       1.98     8.02 
  LCS LOCAL_SCORE:             25.62 
 
 FRAGMENT  2   26 - 63   38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     26 - 36       1.82    12.38 
  LCS LOCAL_SCORE:             17.17 
 
 FRAGMENT  3   68 - 73   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     69 - 73       1.99     3.34 
  LCS LOCAL_SCORE:             80.56 
 
 FRAGMENT  4   77 - 85   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     77 - 85       1.29     1.29 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   89 - 102  14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     89 - 95       1.96     4.92 
  LONGEST_CONTINUOUS_SEGMENT     7     90 - 96       1.15     3.98 
  LCS LOCAL_SCORE:             46.94 
 
 FRAGMENT  6  106 - 121  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    109 - 121      1.39     4.20 
  LCS LOCAL_SCORE:             67.19 
 
 FRAGMENT  7  127 - 140  14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    128 - 132      1.97    18.18 
  LCS LOCAL_SCORE:             30.10 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    1 - 22   22   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     17 - 22       0.84    19.89 
  LCS LOCAL_SCORE:             19.01 
 
 FRAGMENT  2   26 - 63   38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     26 - 35       0.66    12.01 
  LCS LOCAL_SCORE:             14.34 
 
 FRAGMENT  3   68 - 73   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3     68 - 70       0.47     7.34 
  LONGEST_CONTINUOUS_SEGMENT     3     69 - 71       0.02     4.65 
  LONGEST_CONTINUOUS_SEGMENT     3     70 - 72       0.24     6.46 
  LONGEST_CONTINUOUS_SEGMENT     3     71 - 73       0.07     6.01 
  LCS LOCAL_SCORE:             50.00 
 
 FRAGMENT  4   77 - 85   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     77 - 84       0.72     1.46 
  LCS LOCAL_SCORE:             82.72 
 
 FRAGMENT  5   89 - 102  14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     91 - 96       0.79     5.70 
  LCS LOCAL_SCORE:             36.73 
 
 FRAGMENT  6  106 - 121  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    110 - 121      0.78     4.03 
  LCS LOCAL_SCORE:             58.59 
 
 FRAGMENT  7  127 - 140  14   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    127 - 129      0.31     7.62 
  LONGEST_CONTINUOUS_SEGMENT     3    128 - 130      0.11    20.39 
  LONGEST_CONTINUOUS_SEGMENT     3    129 - 131      0.10    19.66 
  LONGEST_CONTINUOUS_SEGMENT     3    131 - 133      0.01    10.29 
  LONGEST_CONTINUOUS_SEGMENT     3    132 - 134      0.46    11.13 
  LONGEST_CONTINUOUS_SEGMENT     3    133 - 135      0.46    10.67 
  LONGEST_CONTINUOUS_SEGMENT     3    134 - 136      0.51     8.57 
  LONGEST_CONTINUOUS_SEGMENT     3    135 - 137      0.64    10.83 
  LONGEST_CONTINUOUS_SEGMENT     3    136 - 138      0.46    11.85 
  LONGEST_CONTINUOUS_SEGMENT     3    137 - 139      0.32    13.18 
  LONGEST_CONTINUOUS_SEGMENT     3    138 - 140      0.60     9.49 
  LCS LOCAL_SCORE:             21.43 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       1       S     4    5   13       C        2   2   2   2   3   5   5   7   7   9  10  11  12  12  12  12  14  14  26  27  
 LCS       2       T     4    5   13       C        2   2   2   2   3   5   5   7   7   9  10  11  12  12  15  19  22  24  26  27  
 LCS       3       D     4    5   13       C        2   2   2   2   3   5   5   6   7   9  10  11  12  15  16  19  22  24  26  27  
 LCS       4       D     4    5   13       C        2   2   2   2   3   5   7   7   7   9  10  12  14  16  17  20  22  24  26  27  
 LCS       5       S     3    5   13       C        2   2   2   3   3   5   7   7   7   9  10  11  12  13  15  19  22  24  26  27  
 LCS       6       P     4    5   13       C        2   2   2   2   3   5   5   6   7   9  10  11  12  13  15  18  22  24  26  27  
 LCS       7       Y     4    5   13       C        2   2   2   2   3   4   4   6   7   7   8  10  11  12  12  12  15  17  20  22  
 LCS       8       K     4    5   13       H        2   2   2   2   3   4   4   5   5   7   7   7  11  12  12  12  15  17  18  21  
 LCS       9       Q     4    5   13       H        2   2   2   2   3   4   4   5   5   7   8  10  11  12  12  12  15  17  18  21  
 LCS      10       A     3    5   13       H        0   2   2   2   3   3   4   6   7   9  10  11  12  12  14  14  15  17  18  21  
 LCS      11       F     3    3   13       H        0   2   2   2   2   5   5   6   7   9  10  11  12  12  15  15  15  17  18  21  
 LCS      12       S     3    3   13       H        0   2   2   2   2   3   5   6   7   8  10  11  12  13  15  15  15  17  18  21  
 LCS      13       L     3    7   13       H        0   2   2   2   4   5   7   7   7   9  10  11  12  13  15  15  15  17  19  21  
 LCS      14       F     3    7   13       C        0   2   2   2   4   5   7   7   7   9  10  11  12  13  15  15  15  17  19  21  
 LCS      15       D     3    7   13       C        0   2   2   2   4   5   7   7   7   9  10  11  12  12  12  15  15  17  19  21  
 LCS      16       R     3    7   13       C        2   2   2   2   4   5   7   7   7   8  10  11  12  12  12  12  15  17  19  21  
 LCS      17       H     6    7   13       C        3   3   4   4   4   5   7   7   8   9  10  11  12  12  13  15  16  17  19  21  
 LCS      18       G     6    7   13       C        3   3   4   4   4   5   7   7   8   9   9  11  12  12  12  13  14  14  20  22  
 LCS      19       T     6    7   13       C        3   3   4   4   4   5   7   7   8   9  10  11  12  13  15  15  15  16  20  22  
 LCS      20       G     6    7   13       C        3   3   4   4   4   5   7   7   8   9  10  11  12  13  15  15  15  16  20  22  
 LCS      21       R     6    6   13       E        3   3   4   4   4   5   5   7   8   9  10  10  12  13  15  15  15  17  20  22  
 LCS      22       I     6    6   13       E        2   2   4   5   7   7   8   8   8   9   9  10  12  13  15  15  16  17  19  22  
 LCS      23       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      24       K     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      25       T     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      26       S    10   11   17       H        2   7   7   7   7   7   8   8   8   9  12  12  13  13  15  15  16  17  19  21  
 LCS      27       I    10   11   17       H        3   7   7   7   7   7   8   8   8   9  12  13  15  17  20  20  22  24  26  27  
 LCS      28       G    10   11   17       H        3   7   7   7   7   7   8   8   8   9   9  10  12  13  17  17  19  22  24  27  
 LCS      29       D    10   11   17       H        3   7   7   7   7   7   8   8   8   9  12  12  15  16  17  18  20  22  22  27  
 LCS      30       L    10   11   17       H        3   7   7   7   7   7   8   8   8  10  12  13  15  17  20  20  22  24  26  27  
 LCS      31       L    10   11   17       H        3   7   7   7   7   7   8   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      32       R    10   11   17       H        3   7   7   7   7   7   8   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      33       A    10   11   17       H        3   7   7   7   7   7   8   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      34       C    10   11   17       C        3   7   7   7   7   7   8   8   8  10  12  14  17  17  20  20  22  24  26  27  
 LCS      35       G    10   11   17       C        3   7   7   7   7   7   8   8   8  10  12  14  17  17  20  20  21  22  24  27  
 LCS      36       Q     4   11   17       C        2   2   3   4   5   5   7   8   9  10  12  14  17  17  20  20  21  22  25  27  
 LCS      37       N     4    6   17       C        2   2   3   4   5   5   7   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      38       P     4    6   17       C        2   2   3   4   5   5   7   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      39       T     4    6   18       C        2   2   3   4   5   5   6   7   8  10  12  14  17  17  20  20  22  23  26  27  
 LCS      40       L     4    6   19       H        2   2   2   3   5   5   6   7   8  10  12  14  17  17  20  20  21  22  24  27  
 LCS      41       A     3    6   19       H        2   2   3   4   5   5   6   7   8  10  12  14  17  17  20  20  21  22  24  27  
 LCS      42       E     3    3   19       H        2   2   2   2   3   5   6   7   8  10  12  14  17  17  20  20  22  24  26  27  
 LCS      43       I     3    5   19       H        2   2   2   2   3   4   5   7   8  10  12  13  17  17  20  20  21  22  22  23  
 LCS      44       T     4    5   19       H        2   2   2   2   3   4   5   7   8  10  12  14  17  17  20  20  21  22  22  23  
 LCS      45       E     4    5   19       H        2   2   2   2   3   4   5   7   8  10  12  13  17  17  20  20  21  22  22  23  
 LCS      46       I     4    5   19       H        2   2   2   2   3   4   4   6   7   9  12  12  14  16  17  19  21  22  23  26  
 LCS      47       E     4    5   19       H        2   2   2   2   3   4   5   6   7   7  11  12  17  17  20  20  21  22  22  26  
 LCS      48       S     4    4   19       C        2   2   2   3   3   5   6   7   8  10  12  14  17  17  20  20  22  24  26  27  
 LCS      49       T     4    5   19       C        2   2   2   4   5   5   7   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      50       L     3    5   19       C        2   2   2   4   5   7   8   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      51       P     4    5   19       C        2   2   2   3   4   5   7   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      52       A     4    5   19       C        2   2   2   3   4   5   7   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      53       E     4    5   19       C        2   2   2   3   4   5   7   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      54       V     4    4   19       E        2   2   2   4   5   5   7   8   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      55       D     4    4   19       E        2   2   2   3   3   5   6   7   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      56       M     4    4   19       H        2   2   2   3   3   5   6   7   9  10  12  14  17  17  20  20  21  24  26  27  
 LCS      57       E     4    4   19       H        2   2   2   2   3   5   6   7   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      58       Q     4    4   19       H        2   2   2   2   2   5   5   6   7  10  11  11  13  17  18  20  21  24  26  27  
 LCS      59       F     3    4   19       H        2   2   2   2   3   5   5   7   9  10  12  14  17  17  20  20  22  24  26  27  
 LCS      60       L     4    4   19       H        2   2   2   2   3   5   5   7   9  10  11  11  12  13  14  18  20  20  21  22  
 LCS      61       Q     4    4   18       H        2   2   2   2   3   5   5   7   9  10  11  11  12  13  14  15  16  17  20  23  
 LCS      62       V     4    4   18       H        2   2   2   2   3   5   5   7   9  10  11  11  11  13  14  15  16  17  20  23  
 LCS      63       L     4    4   18       H        2   2   2   2   3   4   5   7   9  10  11  11  12  13  14  15  16  17  20  22  
 LCS      64       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      65       R     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      66       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      67       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      68       G     3    4    6       C        2   2   2   2   3   3   5   5   5   5   8   8  10  10  11  11  12  13  14  22  
 LCS      69       F     3    5    6       C        2   2   2   2   2   3   3   5   5   6   7   8  10  10  11  11  12  13  14  15  
 LCS      70       D     3    5    6       C        2   2   2   2   2   3   3   5   5   6   7   8  10  10  21  25  26  27  28  30  
 LCS      71       M     3    5    6       C        2   2   2   2   2   7   8   9  10  10  15  19  20  22  24  25  26  27  28  30  
 LCS      72       P     3    5    6       C        2   2   2   2   5   8   9   9  10  14  17  20  20  22  24  25  26  27  28  30  
 LCS      73       G     3    5    6       C        2   2   2   3   6   8   9   9  10  10  10  10  10  13  15  15  23  26  28  30  
 LCS      74       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      75       P     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      76       E     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      77       E     8    9    9       H        3   5   5   6   7   8   9   9  10  10  10  10  10  11  13  16  17  19  28  30  
 LCS      78       F     8    9    9       H        3   5   5   6   7   8   9   9  10  10  10  10  12  22  24  25  26  27  28  30  
 LCS      79       V     8    9    9       H        3   5   5   6   7   8   9   9  10  10  11  11  11  12  13  19  20  24  26  27  
 LCS      80       K     8    9    9       H        3   5   5   6   7   8   9   9  10  10  11  11  11  12  13  15  17  18  20  24  
 LCS      81       G     8    9    9       H        3   5   5   6   7   8   9   9  10  10  10  10  10  11  13  16  17  19  28  30  
 LCS      82       F     8    9    9       H        3   5   5   6   7   8   9   9  10  10  11  11  11  22  24  25  26  27  28  30  
 LCS      83       Q     8    9    9       C        2   5   5   6   7   8   9   9  10  10  11  11  11  12  15  19  20  24  26  27  
 LCS      84       V     8    9    9       C        2   4   5   6   7   8   9   9  10  10  10  10  10  11  11  15  17  18  20  21  
 LCS      85       F     3    9    9       C        0   2   2   2   6   6   9   9  10  10  10  10  10  11  11  15  17  18  20  21  
 LCS      86       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      87       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      88       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      89       A     3    7   14       C        2   2   2   2   2   4   7   7   7   8  10  10  12  14  16  17  18  20  28  30  
 LCS      90       T     5    7   14       C        2   2   4   5   5   6   7   9  15  15  17  20  20  22  24  25  26  27  28  30  
 LCS      91       G     6    7   14       C        2   3   4   7  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS      92       M     6    7   14       C        2   3   4   6  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS      93       I     6    7   14       C        2   3   4   5  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS      94       G     6    7   14       C        2   3   4   5   5   6   7   9  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS      95       V     6    7   14       H        2   3   4   5   5   5   7   9   9  17  17  20  20  22  24  25  26  27  28  30  
 LCS      96       G     6    7   14       H        0   2   4   5   5   6   7   9   9  12  14  15  16  20  22  25  26  27  28  30  
 LCS      97       E     5    6   14       H        3   3   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS      98       L     5    6   14       H        5   7   9   9  10  10  10  13  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS      99       R     5    6   14       H        3   3   3   4   4   5   7  10  13  16  17  20  20  22  24  25  26  27  28  30  
 LCS     100       Y     5    6   14       H        3   3   3   4  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     101       V     5    6   14       H        3   3   3   5   9  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     102       L     3    6   14       H        2   5   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     103       T     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     104       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     105       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     106       G     0    0   16       H        0   2   2   7  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     107       E     0    0   16       C        0   0   0   0   2   2   2   2   2   2   7   7   7  10  20  24  26  27  28  30  
 LCS     108       K     3    3   16       C        2   2   2   2   2   4   6   7  10  10  10  12  14  16  17  20  22  24  27  30  
 LCS     109       L     3   13   16       C        2   2   2   5   8   9   9   9  12  14  17  20  20  22  24  25  26  27  28  30  
 LCS     110       S    12   13   16       C        5   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     111       N    12   13   16       H        5   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     112       E    12   13   16       H        5   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     113       E    12   13   16       H        5   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     114       M    12   13   16       H        5   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     115       D    12   13   16       H        5   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     116       E    12   13   16       H        4   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     117       L    12   13   16       H        4   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     118       L    12   13   16       H        4   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     119       K    12   13   16       H        3   5   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     120       G    12   13   16       H        4   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     121       V    12   13   16       C        3   7   9  10  10  12  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     122       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     123       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     124       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     125       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     126       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     127       M     3    4   13       C        2   2   2   2   2   3   4   5   5   8  10  10  12  19  24  25  26  27  28  30  
 LCS     128       V     3    5   13       C        2   2   2   6   9  11  14  15  15  17  17  20  20  22  24  25  26  27  28  30  
 LCS     129       N     3    5   13       C        2   2   2   2   2   3   4   5   7   7   8  10  10  22  24  25  26  27  28  30  
 LCS     130       Y     3    5   13       C        2   2   2   2   2   2   4   5   5   7   8  10  10  10  18  19  20  22  28  30  
 LCS     131       H     3    5   13       C        2   2   2   2   2   2   4   5   7   7  15  18  20  22  24  25  26  27  28  30  
 LCS     132       D     3    5   13       H        2   2   2   2   2   3   4   5   5   7   8  10  10  10  10  22  24  27  27  30  
 LCS     133       F     3    4   13       H        2   2   2   2   2   3   4   5   7   7   8  10  10  10  10  11  12  25  25  28  
 LCS     134       V     3    4   13       H        2   2   2   2   2   3   4   5   7   7   8  10  10  10  10  11  14  18  20  24  
 LCS     135       Q     3    3   13       H        0   2   2   2   2   2   4   5   5   7   8   9   9   9  10  11  12  12  22  24  
 LCS     136       M     3    3   13       H        2   2   2   2   2   3   4   5   5   7   8   9   9   9  10  10  10  12  17  19  
 LCS     137       I     3    4   13       H        2   2   2   2   2   3   4   5   5   7   8   9   9   9  10  10  10  12  17  19  
 LCS     138       L     3    4   13       C        2   2   2   2   2   3   4   5   5   5   6   7   8  10  10  11  11  12  12  17  
 LCS     139       A     3    4   13       C        2   2   2   2   2   3   4   5   5   5   6   7   8   9  10  10  10  12  12  15  
 LCS     140       N     3    4   12       C        0   2   2   2   2   2   3   5   5   5   6   7   8   9  10  10  10  12  12  15  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   3.31 
 
 NUMBER_OF_CA_Tg:  140      NUMBER_OF_CA_Pr:  119      PERCENT_OF_CA:  85.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       7      11      13      14      14      18      20      21      22      24      25      28      28      32      34      35      37      38      40      43  
 GDT PERCENT_OF_CA_Pr    5.88    9.24   10.92   11.76   11.76   15.13   16.81   17.65   18.49   20.17   21.01   23.53   23.53   26.89   28.57   29.41   31.09   31.93   33.61   36.13 
 GDT PERCENT_OF_CA_Tg    5.00    7.86    9.29   10.00   10.00   12.86   14.29   15.00   15.71   17.14   17.86   20.00   20.00   22.86   24.29   25.00   26.43   27.14   28.57   30.71 
 GDT FRAGMENT: Beg-End  98-115  98-120  98-121  97-121  97-121  92-121  91-121  91-128  91-128  91-128  91-128  72-128  72-128  71-131  71-131  71-131  70-131  70-132  70-131  70-131 
 GDT RMS_LOCAL           0.35    0.58    0.84    1.03    1.03    2.07    2.28    2.40    2.56    2.88    3.04    3.66    3.66    4.54    4.85    4.96    5.21    5.41    5.76    6.16 
 GDT RMS_ALL_CA         27.13   27.96   28.93   32.26   32.26   31.29   31.22   31.02   31.19   30.90   30.75   31.00   31.00   30.33   30.44   30.70   30.38   30.24   31.00   31.26 
 
 
 TEST (CA)  RMS =  15.50               (Number of atoms:  119) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   15.50        119    85.0   140     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1303                            CRMSCA  
     SECONDARY STRUCTURE . .   15.38         61    89.7    68     CRMSCA  
     SURFACE . . . . . . . .   15.69         96    83.5   115     CRMSCA  
     BURIED  . . . . . . . .   14.69         23    92.0    25     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   15.49        476    69.3   687     CRMSMC  
     SECONDARY STRUCTURE . .   15.35        244    72.8   335     CRMSMC  
     SURFACE . . . . . . . .   15.66        384    67.8   566     CRMSMC  
     BURIED  . . . . . . . .   14.74         92    76.0   121     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0  1589     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0  1509     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   823     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0  1313     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   276     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   15.49        476    22.1  2149     CRMSALL 
     SECONDARY STRUCTURE . .   15.35        244    22.3  1095     CRMSALL 
     SURFACE . . . . . . . .   15.66        384    21.7  1773     CRMSALL 
     BURIED  . . . . . . . .   14.74         92    24.5   376     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.427      1.000       0.500    119    85.0   140     ERRCA  
     SECONDARY STRUCTURE . .   14.462      1.000       0.500     61    89.7    68     ERRCA  
     SURFACE . . . . . . . .   14.628      1.000       0.500     96    83.5   115     ERRCA  
     BURIED  . . . . . . . .   13.587      1.000       0.500     23    92.0    25     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.398      1.000       0.500    476    69.3   687     ERRMC  
     SECONDARY STRUCTURE . .   14.432      1.000       0.500    244    72.8   335     ERRMC  
     SURFACE . . . . . . . .   14.596      1.000       0.500    384    67.8   566     ERRMC  
     BURIED  . . . . . . . .   13.572      1.000       0.500     92    76.0   121     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0  1589     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0  1509     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   823     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0  1313     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   276     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.398      1.000       0.500    476    22.1  2149     ERRALL 
     SECONDARY STRUCTURE . .   14.432      1.000       0.500    244    22.3  1095     ERRALL 
     SURFACE . . . . . . . .   14.596      1.000       0.500    384    21.7  1773     ERRALL 
     BURIED  . . . . . . . .   13.572      1.000       0.500     92    24.5   376     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         1         6        26     119     140   DISTCA 
CA  (P)      0.00      0.71      0.71      4.29     18.57             140   DISTCA 
CA  (RMS)    0.00      1.41      1.41      3.40      6.56                   DISTCA 
 
ALL (N)         0         2         7        29       111     476    2149   DISTALL 
ALL (P)      0.00      0.09      0.33      1.35      5.17            2149   DISTALL 
ALL (RMS)    0.00      1.35      2.37      3.74      6.74                   DISTALL 
 
 
 
 
END of the results output 
