 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 89 , MODEL 89 , TARGET 95 
#          The number of residues possible to evaluate: 89 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   121     P     C     C             1.00 
 SSP   122     W     C     C             1.00 
 SSP   123     A     C     C             1.00 
 SSP   124     V     C     C             1.00 
 SSP   125     K     C     C             1.00 
 SSP   126     P     H     C             1.00 
 SSP   127     E     H     C             1.00 
 SSP   128     D     H     C             1.00 
 SSP   129     K     H     C             1.00 
 SSP   130     A     H     C             1.00 
 SSP   131     K     H     H             1.00 
 SSP   132     Y     H     H             1.00 
 SSP   133     D     H     H             1.00 
 SSP   134     A     H     H             1.00 
 SSP   135     I     H     H             1.00 
 SSP   136     F     H     H             1.00 
 SSP   137     D     C     H             1.00 
 SSP   138     S     C     H             1.00 
 SSP   139     L     C     H             1.00 
 SSP   140     S     C     C             1.00 
 SSP   141     P     C     C             1.00 
 SSP   142     V     C     C             1.00 
 SSP   143     N     C     C             1.00 
 SSP   144     G     C     C             1.00 
 SSP   145     F     C     C             1.00 
 SSP   146     L     C     C             1.00 
 SSP   147     S     E     C             1.00 
 SSP   148     G     H     C             1.00 
 SSP   149     D     H     C             1.00 
 SSP   150     K     H     C             1.00 
 SSP   151     V     H     H             1.00 
 SSP   152     K     H     H             1.00 
 SSP   153     P     H     H             1.00 
 SSP   154     V     H     H             1.00 
 SSP   155     L     H     H             1.00 
 SSP   156     L     H     H             1.00 
 SSP   157     N     C     H             1.00 
 SSP   158     S     C     H             1.00 
 SSP   159     K     C     C             1.00 
 SSP   160     L     C     C             1.00 
 SSP   161     P     C     C             1.00 
 SSP   162     V     H     C             1.00 
 SSP   163     D     H     C             1.00 
 SSP   164     I     H     C             1.00 
 SSP   165     L     H     H             1.00 
 SSP   166     G     H     H             1.00 
 SSP   167     R     H     H             1.00 
 SSP   168     V     H     H             1.00 
 SSP   169     W     H     H             1.00 
 SSP   170     E     H     H             1.00 
 SSP   171     L     H     H             1.00 
 SSP   172     S     H     H             1.00 
 SSP   173     D     C     C             1.00 
 SSP   174     I     C     C             1.00 
 SSP   175     D     C     C             1.00 
 SSP   176     H     C     C             1.00 
 SSP   177     D     C     C             1.00 
 SSP   178     G     C     C             1.00 
 SSP   179     M     E     C             1.00 
 SSP   180     L     C     C             1.00 
 SSP   181     D     C     C             1.00 
 SSP   182     R     H     C             1.00 
 SSP   183     D     H     H             1.00 
 SSP   184     E     H     H             1.00 
 SSP   185     F     H     H             1.00 
 SSP   186     A     H     H             1.00 
 SSP   187     V     H     H             1.00 
 SSP   188     A     H     H             1.00 
 SSP   189     M     H     H             1.00 
 SSP   190     F     H     H             1.00 
 SSP   191     L     H     H             1.00 
 SSP   192     V     H     H             1.00 
 SSP   193     Y     H     H             1.00 
 SSP   194     C     H     H             1.00 
 SSP   195     A     H     C             1.00 
 SSP   196     L     H     C             1.00 
 SSP   197     E     H     C             1.00 
 SSP  BREAK 
 SSP   200     P     C     C             1.00 
 SSP   201     V     C     C             1.00 
 SSP   202     P     C     C             1.00 
 SSP   203     M     C     C             1.00 
 SSP   204     S     C     C             1.00 
 SSP   205     L     C     C             1.00 
 SSP   206     P     C     C             1.00 
 SSP   207     P     C     C             1.00 
 SSP   208     A     C     C             1.00 
 SSP   209     L     C     C             1.00 
 SSP   210     V     C     C             1.00 
 SSP   211     P     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              75.3      68.1      0.0     87.5     93.7 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        85.7      91.6      0.0     83.0     93.7 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            4             100.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      89    100.0     75.3 
 
 BIN  0.00 - 1.00      1.00      89    100.0     75.3 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          89              89            89             95 
 ALL CONTACTS (< 8.0A)     372             430           372            454 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       372        309   83.06   71.86   68.06       0     0.00         430       454  |   1-9999 
 RES CONTACTS       257        243   94.55   89.01   83.51       0     0.00         273       291  |   1-4    
 RES CONTACTS        21         14   66.67   48.28   45.16       0     0.00          29        31  |   5-8    
 RES CONTACTS        94         52   55.32   40.62   39.39       0     0.00         128       132  |   9-9999 
 
 
 
# WARNING! TARGET 1494 atoms, MODEL 772 atoms, 742 common with TARGET 
           Number of atoms possible to evaluate: 691 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    48.37           72.4   174    92.6   188     ARMSMC  
     SECONDARY STRUCTURE . .    27.74           83.9    93    98.9    94     ARMSMC  
     SURFACE . . . . . . . .    55.80           65.7    99    88.4   112     ARMSMC  
     BURIED  . . . . . . . .    36.30           81.3    75    98.7    76     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    74.59           51.3    78    92.9    84     ARMSSC1 
     RELIABLE SIDE CHAINS  .    78.82           45.6    68    91.9    74     ARMSSC1 
     SECONDARY STRUCTURE . .    75.60           52.5    40   100.0    40     ARMSSC1 
     SURFACE . . . . . . . .    81.66           46.5    43    87.8    49     ARMSSC1 
     BURIED  . . . . . . . .    64.86           57.1    35   100.0    35     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    72.05           50.8    61    92.4    66     ARMSSC2 
     RELIABLE SIDE CHAINS  .    57.29           56.5    46    90.2    51     ARMSSC2 
     SECONDARY STRUCTURE . .    70.63           50.0    32   100.0    32     ARMSSC2 
     SURFACE . . . . . . . .    64.11           56.8    37    88.1    42     ARMSSC2 
     BURIED  . . . . . . . .    82.82           41.7    24   100.0    24     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    73.12           33.3    15    78.9    19     ARMSSC3 
     RELIABLE SIDE CHAINS  .    73.12           33.3    15    78.9    19     ARMSSC3 
     SECONDARY STRUCTURE . .    60.56           36.4    11   100.0    11     ARMSSC3 
     SURFACE . . . . . . . .    77.31           33.3    12    75.0    16     ARMSSC3 
     BURIED  . . . . . . . .    53.16           33.3     3   100.0     3     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    72.14           37.5     8    72.7    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .    72.14           37.5     8    72.7    11     ARMSSC4 
     SECONDARY STRUCTURE . .    80.74           33.3     6   100.0     6     ARMSSC4 
     SURFACE . . . . . . . .    63.96           42.9     7    70.0    10     ARMSSC4 
     BURIED  . . . . . . . .   114.00            0.0     1   100.0     1     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  121 - 197  77   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    76    121 - 196      4.89     5.13 
  LONGEST_CONTINUOUS_SEGMENT    76    122 - 197      4.93     5.13 
  LCS LOCAL_SCORE:             98.70 
 
 FRAGMENT  2  200 - 211  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    200 - 211      3.88     3.88 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  121 - 197  77   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    43    144 - 186      1.98     5.93 
  LCS LOCAL_SCORE:             42.94 
 
 FRAGMENT  2  200 - 211  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    200 - 203      1.24    17.24 
  LONGEST_CONTINUOUS_SEGMENT     4    202 - 205      0.65     6.99 
  LONGEST_CONTINUOUS_SEGMENT     4    204 - 207      1.66     6.63 
  LONGEST_CONTINUOUS_SEGMENT     4    206 - 209      1.84     5.46 
  LONGEST_CONTINUOUS_SEGMENT     4    207 - 210      1.23    15.97 
  LONGEST_CONTINUOUS_SEGMENT     4    208 - 211      1.66    11.55 
  LCS LOCAL_SCORE:             33.33 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  121 - 197  77   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    20    165 - 184      0.97     6.22 
  LCS LOCAL_SCORE:             18.37 
 
 FRAGMENT  2  200 - 211  12   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    202 - 205      0.65     6.99 
  LCS LOCAL_SCORE:             27.78 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     121       P     5    6   76       C        3   5   5   5   5   6   6  18  24  55  58  62  63  64  69  71  75  76  80  82  
 LCS     122       W     5    6   76       C        3   5   5   5   5   6  11  14  16  23  25  32  37  49  60  63  69  74  78  82  
 LCS     123       A     5    6   76       C        3   5   5   6   7  16  27  28  32  43  51  54  61  66  69  72  77  78  80  82  
 LCS     124       V     5    6   76       C        3   5   5   5   5   6   8   8   8  11  27  32  37  48  55  61  69  72  76  76  
 LCS     125       K     5   16   76       C        3   5   5   5   7  20  27  34  46  50  56  64  71  75  76  76  77  78  80  82  
 LCS     126       P     6   16   76       H        4  11  21  38  48  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     127       E     6   16   76       H        4   7  14  28  40  52  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     128       D     6   16   76       H        4   5   9  16  25  40  54  58  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     129       K    12   16   76       H        4   5  10  18  34  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     130       A    12   24   76       H        4   7  17  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     131       K    12   24   76       H        8  17  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     132       Y    12   24   76       H        8  17  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     133       D    12   24   76       H        9  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     134       A    12   24   76       H        9  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     135       I    12   24   76       H        9  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     136       F    12   24   76       H        9  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     137       D    12   24   76       C        9  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     138       S    12   24   76       C        9  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     139       L    12   24   76       C        6  17  26  38  46  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     140       S    12   24   76       C        4  12  26  34  45  52  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     141       P     3   24   76       C        3   3   3   3   4  17  28  47  56  63  65  67  72  75  76  76  77  78  80  82  
 LCS     142       V     3   24   76       C        3   3   3   6  30  42  51  58  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     143       N     5   32   76       C        4   9  21  29  34  45  51  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     144       G     9   43   76       C        4   9  23  31  41  51  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     145       F    16   43   76       C        5  17  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     146       L    16   43   76       C        8  17  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     147       S    16   43   76       E        5  17  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     148       G    16   43   76       H        5  13  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     149       D    16   43   76       H        8  16  27  38  48  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     150       K    16   43   76       H        8  16  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     151       V    16   43   76       H        8  13  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     152       K    16   43   76       H        8  13  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     153       P    16   43   76       H        8  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     154       V    16   43   76       H        8  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     155       L    16   43   76       H        8  13  22  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     156       L    16   43   76       H        8  13  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     157       N    16   43   76       C        8  14  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     158       S    16   43   76       C        8  13  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     159       K    16   43   76       C        5  13  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     160       L    16   43   76       C        5  13  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     161       P    16   43   76       C        5  13  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     162       V    10   43   76       H        5   9  22  35  48  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     163       D    10   43   76       H        4  11  17  33  44  52  57  60  62  64  66  68  70  73  76  76  77  78  80  82  
 LCS     164       I    19   43   76       H        4   8  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     165       L    20   43   76       H        8  20  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     166       G    20   43   76       H        8  20  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     167       R    20   43   76       H        8  20  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     168       V    20   43   76       H        8  20  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     169       W    20   43   76       H        8  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     170       E    20   43   76       H        8  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     171       L    20   43   76       H        8  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     172       S    20   43   76       H        8  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     173       D    20   43   76       C        8  16  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     174       I    20   43   76       C        8  13  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     175       D    20   43   76       C        6  15  23  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     176       H    20   43   76       C        5  11  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     177       D    20   43   76       C        6  15  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     178       G    20   43   76       C        5  15  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     179       M    20   43   76       E        5  17  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     180       L    20   43   76       C        9  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     181       D    20   43   76       C        9  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     182       R    20   43   76       H        9  20  27  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     183       D    20   43   76       H        5  17  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     184       E    20   43   76       H        5  17  26  38  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     185       F    15   43   76       H        5  14  24  34  49  54  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     186       A    15   43   76       H        5  14  24  34  44  53  58  60  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     187       V    15   37   76       H        5  14  22  29  34  41  49  57  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     188       A    15   25   76       H        5  14  21  29  34  40  47  54  61  64  67  68  72  75  76  76  77  78  80  82  
 LCS     189       M    15   25   76       H        6  14  22  29  35  41  49  57  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     190       F    15   23   76       H        6  14  21  29  34  40  47  52  60  64  67  68  72  75  76  76  77  78  80  82  
 LCS     191       L    15   23   76       H        6  14  21  29  34  38  45  49  54  61  64  68  72  75  76  76  77  78  80  82  
 LCS     192       V    15   23   76       H        6  14  21  29  34  38  45  49  54  60  64  68  72  75  76  76  77  78  80  82  
 LCS     193       Y    15   23   76       H        6  14  21  29  34  37  44  47  52  57  64  68  70  75  76  76  77  78  80  82  
 LCS     194       C    15   23   76       H        6  14  20  27  34  37  44  46  49  55  61  63  66  70  73  76  77  78  80  82  
 LCS     195       A    15   23   76       H        3   6  14  20  28  33  38  41  45  51  55  57  61  67  67  69  71  76  78  80  
 LCS     196       L     3   21   76       H        3   3   3   6   8  23  32  37  41  45  50  52  55  57  61  64  67  72  73  75  
 LCS     197       E     3    3   76       H        3   3   3   3   3  20  26  33  37  40  48  54  56  61  65  69  69  72  74  75  
 LCS     198       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     199       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     200       P     3    4   12       C        3   3  13  21  33  36  44  51  55  61  64  67  72  75  76  76  77  78  80  82  
 LCS     201       V     3    4   12       C        3   3   3  21  33  41  47  54  60  63  66  68  72  75  76  76  77  78  80  82  
 LCS     202       P     4    4   12       C        3   4   4   5  16  48  52  57  62  65  67  68  72  75  76  76  77  78  80  82  
 LCS     203       M     4    4   12       C        3   4   4   4   6   6   8   9   9  10  17  64  71  75  76  76  77  78  80  82  
 LCS     204       S     4    4   12       C        3   4   4   4   6   6   7   8   9  55  58  62  63  64  69  74  76  77  80  82  
 LCS     205       L     4    4   12       C        3   4   4   4   6   6   8   9   9  10  11  11  13  63  69  69  70  74  76  81  
 LCS     206       P     3    4   12       C        3   3   3   3   5   6   8   9   9  10  11  11  13  15  15  15  18  71  73  74  
 LCS     207       P     3    4   12       C        3   3   3   4   5   6   8   9   9  10  11  11  13  15  15  15  16  16  24  25  
 LCS     208       A     3    4   12       C        3   3   3   4   5   6   8   9   9  10  11  11  13  15  15  15  18  21  24  25  
 LCS     209       L     3    4   12       C        3   3   3   4   5   6   8   9   9  10  11  11  13  15  16  17  18  21  24  25  
 LCS     210       V     3    4   12       C        3   3   3   4   4   5   6   8   9  10  11  11  13  15  16  17  18  21  24  25  
 LCS     211       P     3    4   12       C        3   3   3   3   4   5   6   7   8   9  11  11  12  15  16  17  18  21  22  25  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  12.51 
 
 NUMBER_OF_CA_Tg:   95      NUMBER_OF_CA_Pr:   89      PERCENT_OF_CA:  93.68  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      19      26      37      47      52      56      57      59      62      64      65      69      72      73      73      74      75      76      78  
 GDT PERCENT_OF_CA_Pr   10.11   21.35   29.21   41.57   52.81   58.43   62.92   64.04   66.29   69.66   71.91   73.03   77.53   80.90   82.02   82.02   83.15   84.27   85.39   87.64 
 GDT PERCENT_OF_CA_Tg    9.47   20.00   27.37   38.95   49.47   54.74   58.95   60.00   62.11   65.26   67.37   68.42   72.63   75.79   76.84   76.84   77.89   78.95   80.00   82.11 
 GDT FRAGMENT: Beg-End 133-182 133-182 131-182 126-184 130-185 126-185 126-186 126-186 126-186 126-202 126-202 126-202 126-202 125-203 125-203 125-203 125-203 123-203 123-204 121-204 
 GDT RMS_LOCAL           0.41    0.69    1.07    1.39    1.66    1.82    2.00    2.06    2.22    2.50    2.70    2.75    3.27    3.55    3.61    3.61    3.74    3.90    4.03    4.42 
 GDT RMS_ALL_CA          7.54    7.63    7.49    7.50    7.57    7.53    7.49    7.52    7.50    7.44    7.43    7.44    7.49    7.48    7.47    7.47    7.51    7.49    7.46    7.40 
 
 
 TEST (CA)  RMS =   7.32               (Number of atoms:   89) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    7.32         89    93.7    95     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0823                            CRMSCA  
     SECONDARY STRUCTURE . .    5.56         47   100.0    47     CRMSCA  
     SURFACE . . . . . . . .    7.19         51    89.5    57     CRMSCA  
     BURIED  . . . . . . . .    7.50         38   100.0    38     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    7.46        441    93.6   471     CRMSMC  
     SECONDARY STRUCTURE . .    5.64        233   100.0   233     CRMSMC  
     SURFACE . . . . . . . .    7.30        251    89.3   281     CRMSMC  
     BURIED  . . . . . . . .    7.66        190   100.0   190     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    7.99        335    30.1  1114     CRMSSC  
     RELIABLE SIDE CHAINS  .    7.81        283    26.6  1062     CRMSSC  
     SECONDARY STRUCTURE . .    6.21        190    33.2   573     CRMSSC  
     SURFACE . . . . . . . .    8.66        186    29.2   638     CRMSSC  
     BURIED  . . . . . . . .    7.07        149    31.3   476     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    7.68        691    46.3  1494     CRMSALL 
     SECONDARY STRUCTURE . .    5.91        378    49.7   761     CRMSALL 
     SURFACE . . . . . . . .    7.90        390    45.0   866     CRMSALL 
     BURIED  . . . . . . . .    7.38        301    47.9   628     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.158      0.477       0.262     89    93.7    95     ERRCA  
     SECONDARY STRUCTURE . .    2.955      0.428       0.240     47   100.0    47     ERRCA  
     SURFACE . . . . . . . .    4.291      0.492       0.273     51    89.5    57     ERRCA  
     BURIED  . . . . . . . .    3.978      0.457       0.246     38   100.0    38     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.227      0.477       0.257    441    93.6   471     ERRMC  
     SECONDARY STRUCTURE . .    3.009      0.430       0.238    233   100.0   233     ERRMC  
     SURFACE . . . . . . . .    4.353      0.488       0.267    251    89.3   281     ERRMC  
     BURIED  . . . . . . . .    4.061      0.462       0.245    190   100.0   190     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.830      0.518       0.268    335    30.1  1114     ERRSC  
     RELIABLE SIDE CHAINS  .    4.600      0.497       0.260    283    26.6  1062     ERRSC  
     SECONDARY STRUCTURE . .    3.576      0.485       0.256    190    33.2   573     ERRSC  
     SURFACE . . . . . . . .    5.534      0.543       0.286    186    29.2   638     ERRSC  
     BURIED  . . . . . . . .    3.952      0.486       0.246    149    31.3   476     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.486      0.496       0.262    691    46.3  1494     ERRALL 
     SECONDARY STRUCTURE . .    3.286      0.457       0.246    378    49.7   761     ERRALL 
     SURFACE . . . . . . . .    4.849      0.512       0.273    390    45.0   866     ERRALL 
     BURIED  . . . . . . . .    4.016      0.476       0.247    301    47.9   628     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         5        23        47        60        76      89      95   DISTCA 
CA  (P)      5.26     24.21     49.47     63.16     80.00              95   DISTCA 
CA  (RMS)    0.64      1.41      2.08      2.62      4.19                   DISTCA 
 
ALL (N)        29       141       305       435       583     691    1494   DISTALL 
ALL (P)      1.94      9.44     20.41     29.12     39.02            1494   DISTALL 
ALL (RMS)    0.69      1.44      2.09      2.76      4.42                   DISTALL 
 
 
 
 
END of the results output 
