 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 26 , MODEL 26 , TARGET 95 
#          The number of residues possible to evaluate: 26 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   167     R     H     C             1.00 
 SSP   168     V     H     H             1.00 
 SSP   169     W     H     H             1.00 
 SSP   170     E     H     H             1.00 
 SSP   171     L     H     H             1.00 
 SSP   172     S     H     H             1.00 
 SSP   173     D     C     C             1.00 
 SSP   174     I     C     C             1.00 
 SSP   175     D     C     C             1.00 
 SSP   176     H     C     C             1.00 
 SSP   177     D     C     C             1.00 
 SSP   178     G     C     C             1.00 
 SSP   179     M     E     C             1.00 
 SSP   180     L     C     C             1.00 
 SSP   181     D     C     C             1.00 
 SSP   182     R     H     H             1.00 
 SSP   183     D     H     H             1.00 
 SSP   184     E     H     H             1.00 
 SSP   185     F     H     H             1.00 
 SSP   186     A     H     H             1.00 
 SSP   187     V     H     H             1.00 
 SSP   188     A     H     H             1.00 
 SSP   189     M     H     C             1.00 
 SSP   190     F     H     C             1.00 
 SSP   191     L     H     C             1.00 
 SSP   192     V     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              76.9      70.6      0.0    100.0     27.4 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        87.2      94.1      0.0     83.3     27.4 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            2             100.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      26    100.0     76.9 
 
 BIN  0.00 - 1.00      1.00      26    100.0     76.9 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 91 
 
# WARNING! TARGET 1494 atoms, MODEL 661 atoms, 631 common with TARGET 
           Number of atoms possible to evaluate: 104 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    14.46           98.0    50    26.6   188     ARMSMC  
     SECONDARY STRUCTURE . .    14.79           96.9    32    34.0    94     ARMSMC  
     SURFACE . . . . . . . .    14.27          100.0    17    15.2   112     ARMSMC  
     BURIED  . . . . . . . .    14.56           97.0    33    43.4    76     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    84     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    74     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    40     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    49     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    35     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    66     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    51     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    32     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    42     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    24     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    19     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    19     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    11     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    16     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    11     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    11     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     6     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     1     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  167 - 192  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    26    167 - 192      2.49     2.49 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  167 - 192  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    23    167 - 189      1.89     2.66 
  LCS LOCAL_SCORE:             85.50 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  167 - 192  26   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18    167 - 184      0.88     3.41 
  LCS LOCAL_SCORE:             59.62 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     167       R    18   23   26       H        8  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     168       V    18   23   26       H        8  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     169       W    18   23   26       H        8  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     170       E    18   23   26       H        8  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     171       L    18   23   26       H        8  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     172       S    18   23   26       H        8  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     173       D    18   23   26       C        8  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     174       I    18   23   26       C        8  13  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     175       D    18   23   26       C        6  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     176       H    18   23   26       C        4  10  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     177       D    18   23   26       C        6  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     178       G    18   23   26       C        6  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     179       M    18   23   26       E        6  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     180       L    18   23   26       C        6  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     181       D    18   23   26       C        7  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     182       R    18   23   26       H        7  14  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     183       D    18   23   26       H        6  10  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     184       E    18   23   26       H        5  11  18  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     185       F    11   23   26       H        5   7  12  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     186       A    11   23   26       H        5   7  12  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     187       V    11   23   26       H        4   7  12  22  22  22  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     188       A    10   23   26       H        5   6  10  11  14  20  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     189       M    10   23   26       H        5   7  10  11  14  18  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     190       F    10   21   26       H        5   6  10  11  15  21  25  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     191       L     8   14   26       H        5   5   8  10  12  16  20  26  26  27  27  27  27  27  27  27  27  27  27  27  
 LCS     192       V     8   14   26       H        5   6   8  11  12  14  18  22  25  27  27  27  27  27  27  27  27  27  27  27  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   4.47 
 
 NUMBER_OF_CA_Tg:   95      NUMBER_OF_CA_Pr:   26      PERCENT_OF_CA:  27.37  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       8      14      18      21      21      21      24      25      25      26      26      26      26      26      26      26      26      26      26      26  
 GDT PERCENT_OF_CA_Pr   30.77   53.85   69.23   80.77   80.77   80.77   92.31   96.15   96.15  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg    8.42   14.74   18.95   22.11   22.11   22.11   25.26   26.32   26.32   27.37   27.37   27.37   27.37   27.37   27.37   27.37   27.37   27.37   27.37   27.37 
 GDT FRAGMENT: Beg-End 167-174 167-182 167-184 167-187 167-187 167-187 167-190 167-191 167-191 167-192 167-192 167-192 167-192 167-192 167-192 167-192 167-192 167-192 167-192 167-192 
 GDT RMS_LOCAL           0.32    0.65    0.88    1.28    1.28    1.28    2.03    2.24    2.24    2.49    2.49    2.49    2.49    2.49    2.49    2.49    2.49    2.49    2.49    2.49 
 GDT RMS_ALL_CA          3.25    3.57    3.41    3.00    3.00    3.00    2.59    2.52    2.52    2.49    2.49    2.49    2.49    2.49    2.49    2.49    2.49    2.49    2.49    2.49 
 
 
 TEST (CA)  RMS =   2.49               (Number of atoms:   26) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    2.49         26    27.4    95     CRMSCA  
     CRN = ALL/NP  . . . . .    0.0958                            CRMSCA  
     SECONDARY STRUCTURE . .    2.77         17    36.2    47     CRMSCA  
     SURFACE . . . . . . . .    2.14          9    15.8    57     CRMSCA  
     BURIED  . . . . . . . .    2.66         17    44.7    38     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    2.56        104    22.1   471     CRMSMC  
     SECONDARY STRUCTURE . .    2.87         68    29.2   233     CRMSMC  
     SURFACE . . . . . . . .    2.06         36    12.8   281     CRMSMC  
     BURIED  . . . . . . . .    2.79         68    35.8   190     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0  1114     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0  1062     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   573     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   638     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   476     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    2.56        104     7.0  1494     CRMSALL 
     SECONDARY STRUCTURE . .    2.87         68     8.9   761     CRMSALL 
     SURFACE . . . . . . . .    2.06         36     4.2   866     CRMSALL 
     BURIED  . . . . . . . .    2.79         68    10.8   628     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.218      1.000       0.500     26    27.4    95     ERRCA  
     SECONDARY STRUCTURE . .    2.451      1.000       0.500     17    36.2    47     ERRCA  
     SURFACE . . . . . . . .    2.083      1.000       0.500      9    15.8    57     ERRCA  
     BURIED  . . . . . . . .    2.289      1.000       0.500     17    44.7    38     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.252      1.000       0.500    104    22.1   471     ERRMC  
     SECONDARY STRUCTURE . .    2.508      1.000       0.500     68    29.2   233     ERRMC  
     SURFACE . . . . . . . .    1.990      1.000       0.500     36    12.8   281     ERRMC  
     BURIED  . . . . . . . .    2.391      1.000       0.500     68    35.8   190     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0  1114     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0  1062     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   573     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   638     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   476     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    2.252      1.000       0.500    104     7.0  1494     ERRALL 
     SECONDARY STRUCTURE . .    2.508      1.000       0.500     68     8.9   761     ERRALL 
     SURFACE . . . . . . . .    1.990      1.000       0.500     36     4.2   866     ERRALL 
     BURIED  . . . . . . . .    2.391      1.000       0.500     68    10.8   628     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         2        13        21        25        26      26      95   DISTCA 
CA  (P)      2.11     13.68     22.11     26.32     27.37              95   DISTCA 
CA  (RMS)    0.79      1.40      1.87      2.27      2.49                   DISTCA 
 
ALL (N)         8        53        85        99       104     104    1494   DISTALL 
ALL (P)      0.54      3.55      5.69      6.63      6.96            1494   DISTALL 
ALL (RMS)    0.86      1.45      1.87      2.25      2.56                   DISTALL 
 
 
 
 
END of the results output 
