 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 0 0 , MODEL 0 , TARGET 47 
 
# WARNING! TARGET 358 atoms, MODEL 93 atoms, 93 common with TARGET 
           Number of atoms possible to evaluate: 93 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    94     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    82     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    87     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    37     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    37     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    32     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    34     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    32     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    20     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    29     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    29     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    15     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    16     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     8     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    1 - 48   48   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    46      1 - 46       4.94     5.79 
  LCS LOCAL_SCORE:             94.14 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    1 - 48   48   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    25     17 - 41       1.71     6.88 
  LCS LOCAL_SCORE:             45.75 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    1 - 48   48   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22     19 - 40       0.90     7.96 
  LCS LOCAL_SCORE:             35.03 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       1       S    14   22   46       -       12  20  29  37  43  52  56  62  70  77  81  83  83  85  87  87  91  91  93  93  
 LCS       2       L    14   22   46       -       12  20  29  43  47  52  56  62  70  77  81  83  83  85  89  89  91  91  93  93  
 LCS       3       A    14   22   46       -       12  20  29  47  50  54  64  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS       4       A    14   22   46       -       12  20  29  37  43  52  64  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS       5       L    14   22   46       -       12  20  29  37  43  52  64  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS       6       K    14   22   46       -       12  20  29  37  41  56  64  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS       7       S    14   22   46       -       16  20  29  37  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS       8       E    14   22   46       -       16  20  29  37  43  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS       9       L    14   22   46       -       16  20  29  37  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      10       Q    14   22   46       -       16  20  29  37  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      11       A    14   22   46       -       16  20  29  37  50  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      12       L    14   22   46       -       16  20  29  37  43  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      13       K    14   22   46       -       16  20  29  37  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      14       K    14   22   46       -       16  20  29  37  45  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      15       E    13   22   46       -        6  10  29  37  45  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      16       G    11   22   46       -        6  14  29  33  39  52  54  64  72  77  81  83  83  85  89  89  91  91  93  93  
 LCS      17       F     4   25   46       -        6   8   8  14  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      18       S    19   25   46       -        6  14  41  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      19       P    22   25   46       -       10  25  41  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      20       E    22   25   46       -       10  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      21       E    22   25   46       -       18  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      22       L    22   25   46       -       12  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      23       A    22   25   46       -       20  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      24       A    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      25       L    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      26       E    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      27       S    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      28       E    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      29       L    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      30       Q    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      31       A    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      32       L    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      33       E    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      34       K    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      35       K    22   25   46       -       22  37  43  47  52  60  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      36       L    22   25   46       -       25  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      37       A    22   25   46       -       16  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      38       A    22   25   46       -       16  37  43  45  50  56  62  70  75  77  79  83  83  85  89  89  91  91  93  93  
 LCS      39       L    22   25   46       -       25  37  43  47  52  60  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      40       K    22   25   46       -       20  37  43  47  52  62  66  70  75  77  81  83  83  85  89  89  91  91  93  93  
 LCS      41       S    10   25   46       -       18  20  20  20  20  52  62  70  72  77  79  83  83  85  89  89  91  91  93  93  
 LCS      42       K    10   11   46       -       18  20  20  20  20  25  37  41  47  54  58  72  79  85  89  89  91  91  93  93  
 LCS      43       L    10   11   46       -       18  20  20  20  20  20  22  22  31  39  50  56  77  81  89  89  91  91  93  93  
 LCS      44       Q    10   11   46       -       18  20  20  20  20  22  33  41  47  60  75  83  83  85  89  89  91  91  93  93  
 LCS      45       A    10   11   46       -       18  20  20  20  20  20  22  22  27  33  37  43  50  54  81  83  89  91  93  93  
 LCS      46       L    10   11   46       -       18  20  20  20  20  20  22  22  27  27  29  33  33  39  41  47  54  54  60  64  
 LCS      47       K    10   11   31       -       18  20  20  20  20  20  22  22  27  27  29  33  33  37  41  43  47  52  58  62  
 LCS      48       G    10   11   22       -        6  20  20  20  20  20  22  22  27  27  29  33  33  37  41  43  47  52  58  62  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  35.03 
 
 NUMBER_OF_CA_Tg:   48      NUMBER_OF_CA_Pr:   48      PERCENT_OF_CA: 100.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      12      18      21      23      25      30      32      34      36      37      39      40      40      41      43      43      44      44      45      45  
 GDT PERCENT_OF_CA_Pr   25.00   37.50   43.75   47.92   52.08   62.50   66.67   70.83   75.00   77.08   81.25   83.33   83.33   85.42   89.58   89.58   91.67   91.67   93.75   93.75 
 GDT PERCENT_OF_CA_Tg   25.00   37.50   43.75   47.92   52.08   62.50   66.67   70.83   75.00   77.08   81.25   83.33   83.33   85.42   89.58   89.58   91.67   91.67   93.75   93.75 
 GDT FRAGMENT: Beg-End  24-39   23-40   20-40    3-40    7-40    7-40    7-40    3-40    3-40    3-40    1-40    1-40    1-40    1-41    2-44    2-44    1-44    1-44    1-45    1-45  
 GDT RMS_LOCAL           0.35    0.61    0.75    1.16    1.77    2.20    2.31    2.50    2.70    2.78    3.10    3.17    3.17    3.31    3.89    3.89    4.00    4.00    4.38    4.38 
 GDT RMS_ALL_CA          7.99    8.41    8.21    7.23    6.53    6.74    6.60    6.68    6.55    6.57    6.57    6.57    6.57    6.45    6.03    6.03    6.06    6.06    5.91    5.91 
 
 
 TEST (CA)  RMS =   5.71               (Number of atoms:   48) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    5.71         48   100.0    48     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1190                            CRMSCA  
     SECONDARY STRUCTURE . .    5.00         41   100.0    41     CRMSCA  
     SURFACE . . . . . . . .    5.51         44   100.0    44     CRMSCA  
     BURIED  . . . . . . . .    7.56          4   100.0     4     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    5.66         93    39.2   237     CRMSMC  
     SECONDARY STRUCTURE . .    5.19         82    40.0   205     CRMSMC  
     SURFACE . . . . . . . .    5.61         86    39.3   219     CRMSMC  
     BURIED  . . . . . . . .    6.20          7    38.9    18     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    5.60         45    26.9   167     CRMSSC  
     RELIABLE SIDE CHAINS  .    5.60         45    32.8   137     CRMSSC  
     SECONDARY STRUCTURE . .    5.37         41    28.1   146     CRMSSC  
     SURFACE . . . . . . . .    5.71         42    27.1   155     CRMSSC  
     BURIED  . . . . . . . .    3.67          3    25.0    12     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    5.66         93    26.0   358     CRMSALL 
     SECONDARY STRUCTURE . .    5.19         82    26.5   310     CRMSALL 
     SURFACE . . . . . . . .    5.61         86    26.0   331     CRMSALL 
     BURIED  . . . . . . . .    6.20          7    25.9    27     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.804      0.579       0.303     48   100.0    48     ERRCA  
     SECONDARY STRUCTURE . .    3.344      0.560       0.296     41   100.0    41     ERRCA  
     SURFACE . . . . . . . .    3.701      0.577       0.304     44   100.0    44     ERRCA  
     BURIED  . . . . . . . .    4.934      0.602       0.301      4   100.0     4     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.797      0.576       0.295     93    39.2   237     ERRMC  
     SECONDARY STRUCTURE . .    3.491      0.562       0.289     82    40.0   205     ERRMC  
     SURFACE . . . . . . . .    3.784      0.575       0.295     86    39.3   219     ERRMC  
     BURIED  . . . . . . . .    3.952      0.586       0.293      7    38.9    18     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.789      0.573       0.286     45    26.9   167     ERRSC  
     RELIABLE SIDE CHAINS  .    3.789      0.573       0.286     45    32.8   137     ERRSC  
     SECONDARY STRUCTURE . .    3.638      0.564       0.282     41    28.1   146     ERRSC  
     SURFACE . . . . . . . .    3.871      0.573       0.287     42    27.1   155     ERRSC  
     BURIED  . . . . . . . .    2.643      0.565       0.282      3    25.0    12     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.797      0.576       0.295     93    26.0   358     ERRALL 
     SECONDARY STRUCTURE . .    3.491      0.562       0.289     82    26.5   310     ERRALL 
     SURFACE . . . . . . . .    3.784      0.575       0.295     86    26.0   331     ERRALL 
     BURIED  . . . . . . . .    3.952      0.586       0.293      7    25.9    27     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         2         4        15        30        44      48      48   DISTCA 
CA  (P)      4.17      8.33     31.25     62.50     91.67              48   DISTCA 
CA  (RMS)    0.49      1.01      2.21      3.17      4.40                   DISTCA 
 
ALL (N)         2         9        25        60        86      93     358   DISTALL 
ALL (P)      0.56      2.51      6.98     16.76     24.02             358   DISTALL 
ALL (RMS)    0.49      1.25      2.13      3.24      4.52                   DISTALL 
 
 
 
 
END of the results output 
