 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 0 0 , MODEL 0 , TARGET 47 
 
# WARNING! TARGET 358 atoms, MODEL 86 atoms, 85 common with TARGET 
           Number of atoms possible to evaluate: 41 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    94     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    82     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    87     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    37     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    37     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    32     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    34     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    32     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    20     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    29     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    29     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    15     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    16     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    18     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     8     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     7     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     8     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    4 - 44   41   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    33     12 - 44       4.52    12.25 
  LCS LOCAL_SCORE:             73.35 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    4 - 44   41   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    28     17 - 44       1.60    13.55 
  LCS LOCAL_SCORE:             57.47 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    4 - 44   41   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    27     18 - 44       0.77    13.89 
  LCS LOCAL_SCORE:             53.60 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       4       A    13   14   18       -       27  27  27  27  27  27  27  27  29  31  33  35  35  35  35  35  37  39  41  41  
 LCS       5       L    13   14   18       -       27  27  27  27  27  27  27  27  29  31  33  35  35  35  35  35  37  39  41  41  
 LCS       6       K    13   14   18       -       27  27  27  27  27  27  27  27  29  31  33  35  35  35  35  35  37  39  41  41  
 LCS       7       S    13   14   18       -       27  27  27  27  27  27  27  27  29  31  33  35  35  35  35  35  37  39  41  41  
 LCS       8       E    13   14   18       -       27  27  27  27  27  27  27  27  29  31  33  35  35  35  35  35  37  39  41  41  
 LCS       9       L    13   14   18       -       27  27  27  27  27  27  27  27  29  31  33  35  35  35  35  35  37  39  41  41  
 LCS      10       Q    13   14   18       -       27  27  27  27  27  27  27  27  29  31  33  35  35  35  35  35  37  39  41  41  
 LCS      11       A    13   14   18       -       27  27  27  27  27  27  27  27  29  31  33  35  35  35  41  45  54  66  70  70  
 LCS      12       L    13   14   33       -       27  27  27  27  27  27  27  27  29  31  33  35  35  41  54  62  68  68  70  70  
 LCS      13       K    13   14   33       -       27  27  27  27  27  27  27  27  29  31  33  35  35  39  47  62  68  68  70  70  
 LCS      14       K    13   14   33       -       27  27  27  27  27  27  27  27  29  31  33  35  37  43  58  64  68  68  70  70  
 LCS      15       E    13   14   33       -       27  27  27  27  27  27  41  50  56  62  62  62  62  62  62  64  68  68  70  70  
 LCS      16       G    13   14   33       -       27  27  27  27  27  31  45  54  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      17       F     3   28   33       -        6   6   8  27  33  43  50  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      18       S    27   28   33       -       10  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      19       P    27   28   33       -       29  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      20       E    27   28   33       -       29  45  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      21       E    27   28   33       -       29  45  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      22       L    27   28   33       -       33  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      23       A    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      24       A    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      25       L    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      26       E    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      27       S    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      28       E    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      29       L    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      30       Q    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      31       A    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      32       L    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      33       E    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      34       K    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      35       K    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      36       L    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      37       A    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      38       A    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      39       L    27   28   33       -       35  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      40       K    27   28   33       -       31  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      41       S    27   28   33       -       31  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      42       K    27   28   33       -       31  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      43       L    27   28   33       -       31  50  54  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS      44       Q    27   28   33       -       27  39  52  56  56  56  56  56  58  62  62  62  62  62  62  64  68  68  70  70  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  39.11 
 
 NUMBER_OF_CA_Tg:   48      NUMBER_OF_CA_Pr:   41      PERCENT_OF_CA:  85.42  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      17      24      26      27      27      27      27      27      28      30      30      30      30      30      30      31      33      33      34      34  
 GDT PERCENT_OF_CA_Pr   41.46   58.54   63.41   65.85   65.85   65.85   65.85   65.85   68.29   73.17   73.17   73.17   73.17   73.17   73.17   75.61   80.49   80.49   82.93   82.93 
 GDT PERCENT_OF_CA_Tg   35.42   50.00   54.17   56.25   56.25   56.25   56.25   56.25   58.33   62.50   62.50   62.50   62.50   62.50   62.50   64.58   68.75   68.75   70.83   70.83 
 GDT FRAGMENT: Beg-End  23-39   18-43   18-43   18-44   18-44   18-44   18-44   18-44   17-44   15-44   15-44   15-44   15-44   15-44   15-44   14-44   12-44   12-44   11-44   11-44  
 GDT RMS_LOCAL           0.35    0.61    0.68    0.77    0.77    0.77    0.77    0.77    1.60    2.49    2.49    2.49    2.49    2.49    2.49    3.32    4.52    4.52    5.10    5.10 
 GDT RMS_ALL_CA         14.01   13.87   13.94   13.89   13.89   13.89   13.89   13.89   13.55   13.03   13.03   13.03   13.03   13.03   13.03   12.75   12.25   12.25   12.01   12.01 
 
 
 TEST (CA)  RMS =  10.89               (Number of atoms:   41) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   10.89         41    85.4    48     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2656                            CRMSCA  
     SECONDARY STRUCTURE . .   11.30         37    90.2    41     CRMSCA  
     SURFACE . . . . . . . .   10.87         38    86.4    44     CRMSCA  
     BURIED  . . . . . . . .   11.16          3    75.0     4     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   10.89         41    17.3   237     CRMSMC  
     SECONDARY STRUCTURE . .   11.30         37    18.0   205     CRMSMC  
     SURFACE . . . . . . . .   10.87         38    17.4   219     CRMSMC  
     BURIED  . . . . . . . .   11.16          3    16.7    18     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   167     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   137     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   146     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   155     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0    12     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   10.89         41    11.5   358     CRMSALL 
     SECONDARY STRUCTURE . .   11.30         37    11.9   310     CRMSALL 
     SURFACE . . . . . . . .   10.87         38    11.5   331     CRMSALL 
     BURIED  . . . . . . . .   11.16          3    11.1    27     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    9.250      1.000       0.500     41    85.4    48     ERRCA  
     SECONDARY STRUCTURE . .    9.663      1.000       0.500     37    90.2    41     ERRCA  
     SURFACE . . . . . . . .    9.157      1.000       0.500     38    86.4    44     ERRCA  
     BURIED  . . . . . . . .   10.420      1.000       0.500      3    75.0     4     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    9.250      1.000       0.500     41    17.3   237     ERRMC  
     SECONDARY STRUCTURE . .    9.663      1.000       0.500     37    18.0   205     ERRMC  
     SURFACE . . . . . . . .    9.157      1.000       0.500     38    17.4   219     ERRMC  
     BURIED  . . . . . . . .   10.420      1.000       0.500      3    16.7    18     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   167     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   137     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   146     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   155     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0    12     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    9.250      1.000       0.500     41    11.5   358     ERRALL 
     SECONDARY STRUCTURE . .    9.663      1.000       0.500     37    11.9   310     ERRALL 
     SURFACE . . . . . . . .    9.157      1.000       0.500     38    11.5   331     ERRALL 
     BURIED  . . . . . . . .   10.420      1.000       0.500      3    11.1    27     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         5        34      41      48   DISTCA 
CA  (P)      0.00      0.00      0.00     10.42     70.83              48   DISTCA 
CA  (RMS)    0.00      0.00      0.00      4.41      7.04                   DISTCA 
 
ALL (N)         0         0         0         5        34      41     358   DISTALL 
ALL (P)      0.00      0.00      0.00      1.40      9.50             358   DISTALL 
ALL (RMS)    0.00      0.00      0.00      4.41      7.04                   DISTALL 
 
 
 
 
END of the results output 
