 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 58 , MODEL 58 , TARGET 237 
#          The number of residues possible to evaluate: 58 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   172     F     H     C             1.00 
 SSP   173     G     C     H             1.00 
 SSP   174     S     C     H             1.00 
 SSP   175     A     E     H             1.00 
 SSP   176     L     E     H             1.00 
 SSP   177     L     E     H             1.00 
 SSP   178     E     C     H             1.00 
 SSP   179     E     C     H             1.00 
 SSP   180     V     C     H             1.00 
 SSP   181     D     C     C             1.00 
 SSP   182     P     C     C             1.00 
 SSP   183     N     C     C             1.00 
 SSP   184     P     C     C             1.00 
 SSP   185     A     C     C             1.00 
 SSP   186     N     C     C             1.00 
 SSP   187     F     E     C             1.00 
 SSP  BREAK 
 SSP   192     I     E     E             1.00 
 SSP   193     I     E     E             1.00 
 SSP   194     H     E     E             1.00 
 SSP   195     T     C     E             1.00 
 SSP   196     K     C     C             1.00 
 SSP   197     T     C     C             1.00 
 SSP   198     T     C     C             1.00 
 SSP   199     Q     E     C             1.00 
 SSP   200     I     E     C             1.00 
 SSP   201     G     E     E             1.00 
 SSP   202     C     E     E             1.00 
 SSP   203     L     E     E             1.00 
 SSP   204     L     E     E             1.00 
 SSP   205     R     E     E             1.00 
 SSP   206     L     E     E             1.00 
 SSP   207     E     E     C             1.00 
 SSP  BREAK 
 SSP   212     A     C     C             1.00 
 SSP   213     Q     C     E             1.00 
 SSP   214     M     E     E             1.00 
 SSP   215     Y     E     E             1.00 
 SSP   216     R     E     E             1.00 
 SSP   217     L     E     E             1.00 
 SSP   218     T     E     E             1.00 
 SSP   219     L     E     C             1.00 
 SSP   220     R     E     C             1.00 
 SSP   221     T     E     C             1.00 
 SSP  BREAK 
 SSP   223     K     C     C             1.00 
 SSP   224     D     H     C             1.00 
 SSP   225     T     H     H             1.00 
 SSP   226     V     H     H             1.00 
 SSP   227     S     H     H             1.00 
 SSP   228     Q     H     H             1.00 
 SSP   229     R     H     H             1.00 
 SSP   230     L     H     H             1.00 
 SSP   231     C     H     H             1.00 
 SSP   232     E     H     H             1.00 
 SSP   233     L     H     H             1.00 
 SSP   234     L     H     H             1.00 
 SSP   235     S     H     H             1.00 
 SSP   236     E     C     H             1.00 
 SSP   237     Q     C     H             1.00 
 SSP   238     F     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              63.8      84.6     58.3     57.1     24.5 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        76.3      85.7     79.6     66.3     24.5 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            6              66.7              16.7 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      58    100.0     63.8 
 
 BIN  0.00 - 1.00      1.00      58    100.0     63.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          58              58            58            237 
 ALL CONTACTS (< 8.0A)     297             203           297           1150 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       297        150   50.51   73.89   13.04       0     0.00         203      1150  |   1-9999 
 RES CONTACTS       148        118   79.73   94.40   21.65       0     0.00         125       545  |   1-4    
 RES CONTACTS        30          5   16.67   33.33    8.06       0     0.00          15        62  |   5-8    
 RES CONTACTS       119         27   22.69   42.86    4.97       0     0.00          63       543  |   9-9999 
 
 
 
# WARNING! TARGET 1874 atoms, MODEL 1722 atoms, 1701 common with TARGET 
           Number of atoms possible to evaluate: 288 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    68.42           49.1   108    22.9   472     ARMSMC  
     SECONDARY STRUCTURE . .    51.70           56.5    69    24.3   284     ARMSMC  
     SURFACE . . . . . . . .    78.31           38.3    47    17.6   267     ARMSMC  
     BURIED  . . . . . . . .    59.70           57.4    61    29.8   205     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   211     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   198     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   131     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   116     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    95     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   161     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   116     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   103     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    91     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    20     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    13     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  172 - 187  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    172 - 187      4.61     4.61 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  192 - 207  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    196 - 207      4.93     6.41 
  LCS LOCAL_SCORE:             71.48 
 
 FRAGMENT  3  212 - 221  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    212 - 221      2.09     2.09 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  223 - 238  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    223 - 238      1.22     1.22 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  172 - 187  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    181 - 187      1.74     9.86 
  LCS LOCAL_SCORE:             35.94 
 
 FRAGMENT  2  192 - 207  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    199 - 207      1.55    10.06 
  LCS LOCAL_SCORE:             45.31 
 
 FRAGMENT  3  212 - 221  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    212 - 220      1.59     2.38 
  LONGEST_CONTINUOUS_SEGMENT     9    213 - 221      1.41     2.39 
  LCS LOCAL_SCORE:             90.00 
 
 FRAGMENT  4  223 - 238  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    223 - 238      1.22     1.22 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  172 - 187  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    177 - 180      0.65     8.81 
  LONGEST_CONTINUOUS_SEGMENT     4    179 - 182      0.81     8.51 
  LONGEST_CONTINUOUS_SEGMENT     4    181 - 184      0.94    10.48 
  LCS LOCAL_SCORE:             21.88 
 
 FRAGMENT  2  192 - 207  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    200 - 205      0.90     9.68 
  LONGEST_CONTINUOUS_SEGMENT     6    202 - 207      0.69    10.06 
  LCS LOCAL_SCORE:             30.08 
 
 FRAGMENT  3  212 - 221  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    213 - 220      0.85     2.49 
  LCS LOCAL_SCORE:             70.00 
 
 FRAGMENT  4  223 - 238  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14    223 - 236      1.00     1.36 
  LONGEST_CONTINUOUS_SEGMENT    14    224 - 237      0.93     1.30 
  LONGEST_CONTINUOUS_SEGMENT    14    225 - 238      0.92     1.40 
  LCS LOCAL_SCORE:             87.50 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     172       F     3    4   16       H        1   1   2   2   2   3   3   3   4   4   5   6   6   7   9   9  11  11  12  13  
 LCS     173       G     3    4   16       C        1   1   1   1   1   1   2   2   2   3   4   6   6   7  10  10  11  11  14  14  
 LCS     174       S     3    4   16       C        1   1   1   1   1   1   2   2   2   4   4   6   8   9  10  10  11  13  14  14  
 LCS     175       A     3    4   16       E        1   1   1   1   1   1   2   3   4   5   5   6   7   8  10  10  11  13  14  14  
 LCS     176       L     3    3   16       E        1   1   1   1   1   1   2   3   4   5   5   6   7   8  10  10  11  13  14  18  
 LCS     177       L     4    6   16       E        1   1   1   2   2   3   3   4   5   6   6   6   8   9  10  12  13  15  17  18  
 LCS     178       E     4    6   16       C        1   1   1   2   2   3   3   4   5   6   6   7   8   9  10  10  12  15  16  18  
 LCS     179       E     4    6   16       C        1   1   1   2   2   2   3   4   5   6   6   7   8   9  10  10  11  15  16  18  
 LCS     180       V     4    6   16       C        1   1   1   2   2   2   3   3   5   5   6   6   7   9  11  12  13  15  17  18  
 LCS     181       D     4    7   16       C        1   1   2   2   2   3   4   6   8  10  10  12  12  13  13  13  14  15  17  18  
 LCS     182       P     4    7   16       C        1   1   2   2   2   3   3   4   5   5   9  10  10  12  12  13  14  15  17  18  
 LCS     183       N     4    7   16       C        1   1   2   2   2   3   3   4   5   8   9  11  12  13  13  13  14  15  17  18  
 LCS     184       P     4    7   16       C        1   1   2   2   2   3   5   8   9  10  11  12  12  13  13  13  14  15  17  18  
 LCS     185       A     3    7   16       C        1   1   2   2   2   3   3   3  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     186       N     3    7   16       C        1   1   1   2   6   9  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     187       F     3    7   16       E        1   1   2   2   2   3   3   3   8  10  11  12  12  13  13  13  14  15  17  18  
 LCS     188       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     189       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     190       A     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     191       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     192       I     4    5    9       E        1   1   1   2   2   2   2   2   2   2   3   3   4   5   7  12  14  15  17  18  
 LCS     193       I     4    5   10       E        1   1   1   2   2   2   2   2   2   2   3   4   5   5   9  12  14  15  17  18  
 LCS     194       H     4    5   10       E        1   1   1   2   2   2   2   2   2   2   4   4   5   5   7  10  14  15  17  18  
 LCS     195       T     4    5   10       C        1   1   1   2   2   2   2   2   2   3   4   4   5   6   8  12  14  15  17  18  
 LCS     196       K     4    5   12       C        1   1   1   2   2   2   2   2   2   3   4   4   5   5   7   8  14  15  16  18  
 LCS     197       T     3    5   12       C        1   1   1   1   2   2   2   2   2   3   4   4   5  10  12  13  14  15  17  18  
 LCS     198       T     3    5   12       C        0   1   1   1   5   7   8  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     199       Q     3    9   12       E        1   2   5   7   9  10  10  10  10  10  11  12  12  13  13  13  13  15  17  18  
 LCS     200       I     6    9   12       E        1   2   3   6   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     201       G     6    9   12       E        1   2   2   3   3   6   8  10  10  10  11  12  12  13  13  13  13  15  17  18  
 LCS     202       C     6    9   12       E        1   2   3   5   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     203       L     6    9   12       E        1   2   4   6   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     204       L     6    9   12       E        1   2   4   6   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     205       R     6    9   12       E        1   2   5   6   9  10  10  10  10  10  11  12  12  13  13  13  13  15  17  18  
 LCS     206       L     6    9   12       E        1   2   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     207       E     6    9   12       E        1   2   2   3   8  10  10  10  10  10  11  11  12  12  12  13  13  13  15  17  
 LCS     208       P     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     209       N     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     210       L     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     211       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     212       A     3    9   10       C        0   1   2   2   3   3   4   4   5   5   6   7   8   9  10  10  11  13  14  14  
 LCS     213       Q     8    9   10       C        1   2   3   3   3   3   4   4   5   5   6   7   9  10  10  10  11  13  14  14  
 LCS     214       M     8    9   10       E        1   2   3   3   3   3   4   4   5   7   8   9  10  10  10  10  11  13  14  14  
 LCS     215       Y     8    9   10       E        1   2   3   3   3   3   4   4   5   7   8   9  10  10  10  10  11  13  14  15  
 LCS     216       R     8    9   10       E        1   2   3   3   3   3   4   4   5   7   8   9  10  10  10  10  11  13  14  14  
 LCS     217       L     8    9   10       E        1   2   3   3   3   3   4   4   5   7   8   9  10  10  10  10  11  13  16  17  
 LCS     218       T     8    9   10       E        1   2   3   3   3   3   4   4   5   7   8   9  10  10  10  10  10  11  14  14  
 LCS     219       L     8    9   10       E        1   2   3   3   3   3   4   4   5   7   8   9  10  10  11  11  13  15  17  18  
 LCS     220       R     8    9   10       E        1   2   3   3   3   3   4   4   5   7   8   9  10  10  10  10  10  11  11  12  
 LCS     221       T     3    9   10       E        1   1   2   2   3   3   3   5   5   7   8   9  10  10  10  10  13  15  17  18  
 LCS     222       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     223       K    14   16   16       C        1   2   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     224       D    14   16   16       H        1   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     225       T    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     226       V    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     227       S    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     228       Q    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     229       R    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     230       L    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     231       C    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     232       E    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     233       L    14   16   16       H        4   5   5   7   8  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     234       L    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     235       S    14   16   16       H        4   5   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     236       E    14   16   16       C        1   3   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     237       Q    14   16   16       C        1   2   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS     238       F    14   16   16       C        1   2   5   7   9  10  10  10  10  10  11  12  12  13  13  13  14  15  17  18  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.76 
 
 NUMBER_OF_CA_Tg:  237      NUMBER_OF_CA_Pr:   58      PERCENT_OF_CA:  24.47  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      11      12      14      17      22      24      24      25      26      26      28      29      30      31      31      33      34      37      41      44  
 GDT PERCENT_OF_CA_Pr   18.97   20.69   24.14   29.31   37.93   41.38   41.38   43.10   44.83   44.83   48.28   50.00   51.72   53.45   53.45   56.90   58.62   63.79   70.69   75.86 
 GDT PERCENT_OF_CA_Tg    4.64    5.06    5.91    7.17    9.28   10.13   10.13   10.55   10.97   10.97   11.81   12.24   12.66   13.08   13.08   13.92   14.35   15.61   17.30   18.57 
 GDT FRAGMENT: Beg-End 225-235 224-235 224-238 199-238 199-238 199-238 199-238 199-238 186-238 186-238 185-238 184-238 181-238 181-238 181-238 181-238 181-238 177-238 177-238 176-238 
 GDT RMS_LOCAL           0.33    0.55    0.90    1.38    1.70    1.82    1.82    1.99    2.25    2.25    2.94    3.28    3.72    4.04    4.04    4.69    5.42    5.90    6.39    6.94 
 GDT RMS_ALL_CA         11.11   11.16   11.00   11.79   11.94   12.06   12.06   12.10   11.85   11.85   11.30   11.10   10.88   10.76   10.76   10.58   10.39   10.35   10.24   10.19 
 
 
 TEST (CA)  RMS =   9.52               (Number of atoms:   58) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    9.52         58    24.5   237     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1642                            CRMSCA  
     SECONDARY STRUCTURE . .    9.28         37    26.1   142     CRMSCA  
     SURFACE . . . . . . . .   10.48         25    18.7   134     CRMSCA  
     BURIED  . . . . . . . .    8.73         33    32.0   103     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    9.55        288    24.6  1172     CRMSMC  
     SECONDARY STRUCTURE . .    9.30        184    26.2   702     CRMSMC  
     SURFACE . . . . . . . .   10.44        123    18.6   662     CRMSMC  
     BURIED  . . . . . . . .    8.83        165    32.4   510     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    9.83         56     6.0   926     CRMSSC  
     RELIABLE SIDE CHAINS  .    9.83         56     7.3   762     CRMSSC  
     SECONDARY STRUCTURE . .    9.64         36     6.0   598     CRMSSC  
     SURFACE . . . . . . . .   11.51         23     4.5   507     CRMSSC  
     BURIED  . . . . . . . .    8.45         33     7.9   419     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    9.55        288    15.4  1874     CRMSALL 
     SECONDARY STRUCTURE . .    9.30        184    15.8  1166     CRMSALL 
     SURFACE . . . . . . . .   10.44        123    11.8  1043     CRMSALL 
     BURIED  . . . . . . . .    8.83        165    19.9   831     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.669      0.293       0.171     58    24.5   237     ERRCA  
     SECONDARY STRUCTURE . .    3.520      0.310       0.176     37    26.1   142     ERRCA  
     SURFACE . . . . . . . .    4.027      0.271       0.157     25    18.7   134     ERRCA  
     BURIED  . . . . . . . .    3.398      0.309       0.181     33    32.0   103     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.773      0.300       0.177    288    24.6  1172     ERRMC  
     SECONDARY STRUCTURE . .    3.612      0.316       0.180    184    26.2   702     ERRMC  
     SURFACE . . . . . . . .    4.071      0.276       0.160    123    18.6   662     ERRMC  
     BURIED  . . . . . . . .    3.551      0.318       0.189    165    32.4   510     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.386      0.338       0.218     56     6.0   926     ERRSC  
     RELIABLE SIDE CHAINS  .    4.386      0.338       0.218     56     7.3   762     ERRSC  
     SECONDARY STRUCTURE . .    4.593      0.374       0.248     36     6.0   598     ERRSC  
     SURFACE . . . . . . . .    4.922      0.308       0.172     23     4.5   507     ERRSC  
     BURIED  . . . . . . . .    4.012      0.358       0.251     33     7.9   419     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.773      0.300       0.177    288    15.4  1874     ERRALL 
     SECONDARY STRUCTURE . .    3.612      0.316       0.180    184    15.8  1166     ERRALL 
     SURFACE . . . . . . . .    4.071      0.276       0.160    123    11.8  1043     ERRALL 
     BURIED  . . . . . . . .    3.551      0.318       0.189    165    19.9   831     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         5        39      58     237   DISTCA 
CA  (P)      0.00      0.00      0.00      2.11     16.46             237   DISTCA 
CA  (RMS)    0.00      0.00      0.00      4.26      7.44                   DISTCA 
 
ALL (N)         0         0         3        23       187     288    1874   DISTALL 
ALL (P)      0.00      0.00      0.16      1.23      9.98            1874   DISTALL 
ALL (RMS)    0.00      0.00      2.56      4.02      7.35                   DISTALL 
 
 
 
 
END of the results output 
