 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
#          The number of residues in SS section: 164 , MODEL 164 , TARGET 237 
#          The number of residues possible to evaluate: 164 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    71     K     C     C             1.00 
 SSP    72     P     C     C             1.00 
 SSP    73     V     C     C             1.00 
 SSP    74     D     C     H             1.00 
 SSP    75     P     C     H             1.00 
 SSP    76     T     C     H             1.00 
 SSP    77     V     E     H             1.00 
 SSP    78     D     C     H             1.00 
 SSP    79     G     C     H             1.00 
 SSP    80     G     C     H             1.00 
 SSP    81     A     C     H             1.00 
 SSP    82     Q     E     H             1.00 
 SSP    83     V     E     H             1.00 
 SSP    84     Q     E     H             1.00 
 SSP    85     Q     E     C             1.00 
 SSP    86     V     E     C             1.00 
 SSP    87     I     E     C             1.00 
 SSP    88     N     E     H             1.00 
 SSP    89     I     E     H             1.00 
 SSP    90     E     E     H             1.00 
 SSP    91     C     E     H             1.00 
 SSP    92     I     C     H             1.00 
 SSP    93     S     C     H             1.00 
 SSP    94     D     C     H             1.00 
 SSP    95     F     C     C             1.00 
 SSP    96     T     C     C             1.00 
 SSP    97     E     C     C             1.00 
 SSP    98     A     C     C             1.00 
 SSP    99     P     C     C             1.00 
 SSP   100     V     E     C             1.00 
 SSP   101     L     E     C             1.00 
 SSP   102     N     E     C             1.00 
 SSP   103     I     E     C             1.00 
 SSP   104     Q     E     C             1.00 
 SSP   105     F     E     C             1.00 
 SSP   106     R     E     C             1.00 
 SSP   107     Y     E     C             1.00 
 SSP   108     G     C     C             1.00 
 SSP   109     G     C     C             1.00 
 SSP   110     T     E     C             1.00 
 SSP   111     F     E     E             1.00 
 SSP   112     Q     E     E             1.00 
 SSP   113     N     E     H             1.00 
 SSP   114     V     E     H             1.00 
 SSP   115     S     E     H             1.00 
 SSP   116     V     E     H             1.00 
 SSP   117     K     E     C             1.00 
 SSP   118     L     C     C             1.00 
 SSP   119     P     C     C             1.00 
 SSP   120     I     C     C             1.00 
 SSP   121     T     C     C             1.00 
 SSP   122     L     H     C             1.00 
 SSP   123     N     H     C             1.00 
 SSP   124     K     H     C             1.00 
 SSP   125     F     H     C             1.00 
 SSP   126     F     E     C             1.00 
 SSP   127     Q     E     C             1.00 
 SSP   128     P     E     C             1.00 
 SSP   129     T     C     C             1.00 
 SSP   130     E     C     E             1.00 
 SSP   131     M     C     E             1.00 
 SSP   132     A     C     C             1.00 
 SSP   133     S     H     C             1.00 
 SSP   134     Q     H     C             1.00 
 SSP   135     D     H     C             1.00 
 SSP   136     F     H     C             1.00 
 SSP   137     F     H     C             1.00 
 SSP   138     Q     H     C             1.00 
 SSP   139     R     H     C             1.00 
 SSP   140     W     H     C             1.00 
 SSP   141     K     C     C             1.00 
 SSP   142     Q     C     C             1.00 
 SSP   143     L     C     C             1.00 
 SSP   144     S     C     C             1.00 
 SSP   145     N     C     C             1.00 
 SSP   146     P     H     C             1.00 
 SSP   147     Q     H     E             1.00 
 SSP   148     Q     H     E             1.00 
 SSP   149     E     E     E             1.00 
 SSP   150     V     E     E             1.00 
 SSP   151     Q     E     C             1.00 
 SSP   152     N     E     C             1.00 
 SSP   153     I     E     C             1.00 
 SSP   154     F     E     H             1.00 
 SSP   155     K     E     H             1.00 
 SSP   156     A     C     H             1.00 
 SSP   157     K     C     C             1.00 
 SSP   158     H     C     C             1.00 
 SSP   159     P     C     C             1.00 
 SSP   160     M     C     C             1.00 
 SSP   161     D     C     E             1.00 
 SSP   162     T     H     C             1.00 
 SSP   163     E     H     C             1.00 
 SSP   164     I     H     C             1.00 
 SSP   165     T     H     C             1.00 
 SSP   166     K     H     C             1.00 
 SSP   167     A     H     E             1.00 
 SSP   168     K     H     C             1.00 
 SSP   169     I     H     C             1.00 
 SSP   170     I     H     C             1.00 
 SSP   171     G     H     C             1.00 
 SSP   172     F     H     C             1.00 
 SSP   173     G     C     C             1.00 
 SSP   174     S     C     C             1.00 
 SSP   175     A     E     C             1.00 
 SSP   176     L     E     C             1.00 
 SSP   177     L     E     C             1.00 
 SSP  BREAK 
 SSP   179     E     C     C             1.00 
 SSP   180     V     C     E             1.00 
 SSP   181     D     C     E             1.00 
 SSP   182     P     C     E             1.00 
 SSP   183     N     C     E             1.00 
 SSP   184     P     C     C             1.00 
 SSP   185     A     C     C             1.00 
 SSP   186     N     C     C             1.00 
 SSP   187     F     E     C             1.00 
 SSP   188     V     E     C             1.00 
 SSP   189     G     E     C             1.00 
 SSP   190     A     E     C             1.00 
 SSP   191     G     E     C             1.00 
 SSP   192     I     E     E             1.00 
 SSP   193     I     E     E             1.00 
 SSP   194     H     E     E             1.00 
 SSP   195     T     C     E             1.00 
 SSP   196     K     C     C             1.00 
 SSP   197     T     C     C             1.00 
 SSP   198     T     C     C             1.00 
 SSP   199     Q     E     C             1.00 
 SSP   200     I     E     C             1.00 
 SSP   201     G     E     E             1.00 
 SSP   202     C     E     E             1.00 
 SSP   203     L     E     E             1.00 
 SSP   204     L     E     E             1.00 
 SSP   205     R     E     C             1.00 
 SSP   206     L     E     C             1.00 
 SSP   207     E     E     C             1.00 
 SSP   208     P     E     C             1.00 
 SSP   209     N     E     C             1.00 
 SSP   210     L     C     C             1.00 
 SSP   211     Q     C     C             1.00 
 SSP   212     A     C     C             1.00 
 SSP   213     Q     C     C             1.00 
 SSP   214     M     E     H             1.00 
 SSP   215     Y     E     H             1.00 
 SSP   216     R     E     H             1.00 
 SSP   217     L     E     C             1.00 
 SSP   218     T     E     H             1.00 
 SSP   219     L     E     H             1.00 
 SSP   220     R     E     H             1.00 
 SSP   221     T     E     H             1.00 
 SSP   222     S     C     C             1.00 
 SSP   223     K     C     C             1.00 
 SSP   224     D     H     C             1.00 
 SSP   225     T     H     C             1.00 
 SSP   226     V     H     C             1.00 
 SSP   227     S     H     C             1.00 
 SSP   228     Q     H     C             1.00 
 SSP   229     R     H     C             1.00 
 SSP   230     L     H     C             1.00 
 SSP   231     C     H     C             1.00 
 SSP   232     E     H     C             1.00 
 SSP  BREAK 
 SSP   236     E     C     C             1.00 
 SSP   237     Q     C     C             1.00 
 SSP   238     F     C     C             1.00 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              32.9       0.0     16.4     69.4     69.2 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        28.6       0.0     24.7     46.1     69.2 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           14              20.2              29.8 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     164    100.0     32.9 
 
 BIN  0.00 - 1.00      1.00     164    100.0     32.9 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 224 
 
# WARNING! TARGET 1874 atoms, MODEL 1255 atoms, 1240 common with TARGET 
           Number of atoms possible to evaluate: 656 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    94.06           33.9   322    68.2   472     ARMSMC  
     SECONDARY STRUCTURE . .    90.39           38.7   186    65.5   284     ARMSMC  
     SURFACE . . . . . . . .    96.09           33.3   180    67.4   267     ARMSMC  
     BURIED  . . . . . . . .    91.42           34.5   142    69.3   205     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   211     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   198     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   131     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   116     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    95     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   161     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   116     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   103     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    91     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    20     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    13     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   71 - 177  107  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    22    144 - 165      4.65    36.03 
  LONGEST_CONTINUOUS_SEGMENT    22    145 - 166      4.55    36.50 
  LONGEST_CONTINUOUS_SEGMENT    22    146 - 167      4.89    37.11 
  LCS LOCAL_SCORE:             14.67 
 
 FRAGMENT  2  179 - 232  54   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    21    187 - 207      5.00    19.04 
  LCS LOCAL_SCORE:             31.38 
 
 FRAGMENT  3  236 - 238  3    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    236 - 238      0.38     0.37 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   71 - 177  107  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    101 - 108      1.98    49.23 
  LCS LOCAL_SCORE:              5.09 
 
 FRAGMENT  2  179 - 232  54   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    198 - 207      1.37    19.98 
  LCS LOCAL_SCORE:             12.41 
 
 FRAGMENT  3  236 - 238  3    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    236 - 238      0.38     0.37 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   71 - 177  107  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     84 - 88       0.68    33.46 
  LONGEST_CONTINUOUS_SEGMENT     5    102 - 106      0.77    49.91 
  LONGEST_CONTINUOUS_SEGMENT     5    109 - 113      0.90    49.39 
  LONGEST_CONTINUOUS_SEGMENT     5    127 - 131      0.93    46.22 
  LONGEST_CONTINUOUS_SEGMENT     5    148 - 152      0.53    34.73 
  LCS LOCAL_SCORE:              3.60 
 
 FRAGMENT  2  179 - 232  54   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    199 - 205      0.94    20.30 
  LCS LOCAL_SCORE:              8.30 
 
 FRAGMENT  3  236 - 238  3    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3    236 - 238      0.38     0.37 
  LCS LOCAL_SCORE:            100.00 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      71       K     3    3   12       C        1   1   1   1   1   1   2   2   2   4   4   5   5   5   6   6   7   8   8   8  
 LCS      72       P     3    4   12       C        1   1   1   1   1   2   2   2   3   3   4   5   5   5   6   8   9  10  11  13  
 LCS      73       V     3    4   12       C        1   1   1   1   1   2   2   2   3   3   4   5   5   5   6   8   9  10  11  13  
 LCS      74       D     4    4   12       C        1   1   1   1   1   2   2   2   3   4   5   5   5   6   7   7   8   9  10  10  
 LCS      75       P     4    4   12       C        1   1   1   1   1   2   2   3   3   4   5   5   5   6   7   8   8   9  10  10  
 LCS      76       T     4    4   12       C        1   1   1   1   1   2   2   3   4   4   5   5   5   6   7   8   8   9  10  10  
 LCS      77       V     4    4   12       E        1   1   1   1   1   2   2   2   4   4   4   5   5   6   7   8   8   9  10  10  
 LCS      78       D     4    5   12       C        1   1   1   1   2   2   2   2   3   3   4   5   5   5   7   8   8   9  10  10  
 LCS      79       G     4    5   12       C        1   1   1   1   2   2   2   2   3   3   4   5   5   6   7   8   8   9  10  10  
 LCS      80       G     4    5   12       C        1   1   1   1   2   2   2   2   3   3   4   5   5   5   5   6   8   9   9  10  
 LCS      81       A     4    5   12       C        1   1   1   1   2   2   2   2   3   3   4   5   5   5   6   8   8   9  10  10  
 LCS      82       Q     3    5   12       E        0   1   1   1   2   2   2   2   4   4   5   5   5   6   7   8   8   9  10  10  
 LCS      83       V     3    7   10       E        0   1   1   2   2   2   2   3   4   4   5   5   5   7   8   8  11  12  13  15  
 LCS      84       Q     5    7   10       E        0   2   2   2   2   2   2   3   4   4   5   5   6   9  12  12  13  13  14  15  
 LCS      85       Q     5    7   10       E        1   2   2   2   2   2   2   2   4   5   5   5   6   7  12  12  13  13  14  15  
 LCS      86       V     5    7   11       E        1   2   2   2   2   2   3   4   4   5   5   5   8  10  12  12  13  13  14  15  
 LCS      87       I     5    7   11       E        1   2   2   2   2   2   3   4   4   5   5   5   8  10  12  12  13  13  14  15  
 LCS      88       N     5    7   11       E        1   2   2   2   2   2   3   4   4   5   5   5   7  10  12  12  13  13  14  15  
 LCS      89       I     3    7   11       E        1   1   2   2   2   2   3   3   4   5   6   8   9  10  12  12  13  13  14  15  
 LCS      90       E     3    3   13       E        1   1   1   2   2   2   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS      91       C     3    4   13       E        1   1   1   2   2   2   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS      92       I     3    4   13       C        1   1   1   2   2   2   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS      93       S     3    6   13       C        1   1   1   1   2   2   2   3   3   3   4   4   5   6   8   8   9  12  13  14  
 LCS      94       D     3    6   13       C        0   1   1   1   2   2   2   3   3   4   4   4   5   5   6   6   6   7   7   8  
 LCS      95       F     3    6   13       C        0   1   1   1   2   2   2   3   3   3   4   4   5   5   5   6   9  12  13  14  
 LCS      96       T     3    6   13       C        0   1   1   1   2   2   2   2   3   3   4   4   5   5   5   6   6   6   6   7  
 LCS      97       E     3    6   13       C        0   1   1   1   2   2   2   2   3   3   4   4   5   5   5   6   6   6   6   7  
 LCS      98       A     3    6   13       C        1   1   1   1   2   2   2   3   3   3   4   4   5   5   5   6   6   6   6   7  
 LCS      99       P     4    4   13       C        1   1   1   1   1   2   2   2   3   3   4   4   5   5   7   8   9  10  10  11  
 LCS     100       V     4    4   13       E        1   1   1   1   1   2   2   3   3   3   4   4   5   5   6   6   7   8   9  11  
 LCS     101       L     4    8   13       E        1   1   1   1   1   2   3   3   3   4   4   5   5   5   6   6   7   8   8   8  
 LCS     102       N     5    8   13       E        1   2   2   2   2   2   3   3   3   4   4   5   5   5   6   6   6   6   7   8  
 LCS     103       I     5    8   13       E        1   2   2   2   2   2   3   3   3   4   4   5   5   5   6   6   6   6   7   8  
 LCS     104       Q     5    8   12       E        1   2   2   2   2   2   3   3   3   4   4   5   5   5   6   6   6   6   7   8  
 LCS     105       F     5    8   12       E        1   2   2   2   2   2   3   3   3   4   4   5   5   5   6   9   9   9  10  10  
 LCS     106       R     5    8   15       E        1   2   2   2   2   2   3   3   3   5   5   7   8   8   8   9   9   9  10  10  
 LCS     107       Y     4    8   15       E        1   1   2   2   2   2   3   3   4   5   5   7   8   8   8   9   9   9  10  10  
 LCS     108       G     4    8   15       C        1   1   2   2   2   3   3   3   4   4   5   7   8   8   8   9   9   9  10  10  
 LCS     109       G     5    7   15       C        1   1   2   2   2   3   3   3   4   4   5   5   6   6   6   6   6   7   7   7  
 LCS     110       T     5    7   15       E        1   1   2   2   2   3   3   3   4   4   5   5   6   6   8   8   8   8   9  10  
 LCS     111       F     5    7   15       E        1   1   2   2   2   3   3   3   4   4   5   5   6   8   8   8   8   8   9  10  
 LCS     112       Q     5    7   15       E        1   1   2   2   2   3   3   3   4   4   5   5   6   6   7   7   8   9   9  10  
 LCS     113       N     5    7   15       E        1   1   2   2   2   3   3   3   4   4   5   5   6   6   6   6   8   8   8   9  
 LCS     114       V     3    7   15       E        0   1   2   2   2   3   3   3   4   4   5   5   6   6   6   6   6   7   7   8  
 LCS     115       S     3    3   15       E        0   1   1   1   1   1   2   2   3   4   5   5   6   6   6   6   6   7   7   8  
 LCS     116       V     3    3   15       E        0   1   1   1   1   1   2   2   3   3   5   5   6   6   6   6   6   7   7   8  
 LCS     117       K     3    3   15       E        0   1   1   1   1   1   2   2   2   4   5   5   6   6   6   6   6   7   7   8  
 LCS     118       L     4    4   16       C        1   1   1   1   2   3   3   3   4   5   5   5   6   6   6   6   6   7   7   8  
 LCS     119       P     4    5   16       C        1   1   1   1   2   2   3   3   4   5   5   5   6   6   6   6   6   7   8   8  
 LCS     120       I     4    5   16       C        1   1   1   1   2   2   2   3   4   5   5   5   6   6   6   6   6   7   8   8  
 LCS     121       T     4    5   16       C        1   1   1   1   2   2   2   3   4   5   5   5   5   6   6   6   6   7   8   8  
 LCS     122       L     3    5   16       H        1   1   1   1   1   2   2   3   4   5   5   5   5   6   6   6   6   7   8   8  
 LCS     123       N     3    5   16       H        1   1   1   1   2   2   4   4   4   5   5   5   5   6   6   6   6   7   8   8  
 LCS     124       K     3    5   16       H        1   1   1   2   2   2   2   3   4   5   5   5   5   6   6   6   6   7   8   8  
 LCS     125       F     4    5   16       H        1   1   1   2   2   2   4   4   4   5   5   5   5   6   6   6   6   7   8   8  
 LCS     126       F     4    5   16       E        1   1   1   2   2   3   4   4   4   5   5   5   5   6   6   6   6   7   7   8  
 LCS     127       Q     5    7   16       E        1   1   2   2   2   3   4   4   4   5   5   5   5   6   6   6   6   7   7   8  
 LCS     128       P     5    7   16       E        1   1   2   2   2   3   4   4   4   5   5   5   5   6   6   6   6   7   7   8  
 LCS     129       T     5    7   16       C        1   1   2   2   2   3   4   4   4   5   5   5   5   6   6   6   6   7   7  10  
 LCS     130       E     5    7   16       C        1   1   2   2   2   3   4   4   4   5   5   5   5   6   6   6   7   7   8  10  
 LCS     131       M     5    7   16       C        1   1   2   2   2   3   4   4   4   5   5   5   5   6   7   7   8   8   9  10  
 LCS     132       A     4    7   16       C        1   1   2   2   2   3   4   4   4   5   5   5   5   6   6   6   8   8   8   9  
 LCS     133       S     4    7   16       H        1   1   1   2   2   3   4   4   4   5   5   5   5   6   7   7   8   8   8   9  
 LCS     134       Q     3    5   14       H        0   1   1   1   2   2   2   2   2   2   4   5   5   5   6   6   6   7   8   8  
 LCS     135       D     4    5   14       H        1   1   1   1   2   2   2   3   3   4   5   5   5   5   6   6   6   7   8   8  
 LCS     136       F     4    5   14       H        1   1   1   1   2   2   2   3   3   4   5   5   5   5   6   6   6   7   8   8  
 LCS     137       F     4    5   14       H        1   1   1   1   2   2   2   3   4   4   5   5   5   5   6   6   6   7   8   8  
 LCS     138       Q     4    5   14       H        1   1   1   1   2   2   2   3   4   4   5   5   5   5   6   6   6   7   8   8  
 LCS     139       R     3    4   14       H        1   1   1   1   1   1   2   3   4   4   5   5   5   5   6   6   6   7   8   8  
 LCS     140       W     3    5   14       H        0   1   1   1   2   2   2   3   4   4   5   5   5   5   6   6   6   7   8   8  
 LCS     141       K     4    5   14       C        1   1   1   1   2   2   2   3   4   4   5   5   5   5   6   6   6   7   8   8  
 LCS     142       Q     4    5   14       C        1   1   1   1   2   2   2   3   4   4   5   5   5   5   6   6   7   8   9  10  
 LCS     143       L     4    5   14       C        1   1   1   1   2   2   2   3   4   4   5   5   5   5   6   6   6   8   9  10  
 LCS     144       S     4    5   22       C        1   1   1   1   2   2   2   3   4   4   5   6   8   8  10  11  12  14  15  15  
 LCS     145       N     3    4   22       C        1   1   1   1   2   2   4   5   6   7   7   8   8   9  10  11  12  14  15  15  
 LCS     146       P     3    4   22       H        1   1   1   1   1   3   4   5   6   7   7   8   8   9  10  11  12  14  15  15  
 LCS     147       Q     3    6   22       H        0   1   1   2   2   4   5   5   6   7   8   8   8   9  10  11  12  14  15  15  
 LCS     148       Q     5    6   22       H        1   2   2   2   2   4   5   5   6   7   8   8   8   9  10  11  12  14  15  15  
 LCS     149       E     5    6   22       E        1   2   2   2   2   4   5   5   6   7   8   8   8   9  10  11  12  14  15  15  
 LCS     150       V     5    6   22       E        1   2   2   2   2   4   5   5   6   7   8   8   8   9  10  11  12  14  15  15  
 LCS     151       Q     5    6   22       E        1   2   2   2   2   3   4   5   6   6   8   8   8   9  10  11  12  14  15  15  
 LCS     152       N     5    6   22       E        1   2   2   2   2   3   3   5   5   6   8   8   9   9  10  11  12  14  15  15  
 LCS     153       I     3    3   22       E        0   1   1   1   2   2   2   3   4   5   8   8   8   9  10  11  12  14  15  15  
 LCS     154       F     3    3   22       E        0   1   1   1   2   3   3   3   4   5   8   8   8   9  10  11  12  14  15  15  
 LCS     155       K     3    3   22       E        0   1   1   2   2   3   4   5   6   6   8   8   8   9  10  11  12  14  15  15  
 LCS     156       A     3    6   22       C        0   1   1   2   2   4   5   5   6   7   8   8   8   9  10  11  12  14  15  15  
 LCS     157       K     3    6   22       C        0   1   1   2   2   4   5   5   6   7   8   8   8   9  10  11  12  14  15  15  
 LCS     158       H     4    6   22       C        1   2   2   2   2   4   5   5   6   7   8   8   8   9  10  11  12  14  15  15  
 LCS     159       P     4    6   22       C        1   1   1   2   2   3   5   5   6   6   8   8   8   9  10  11  12  14  15  15  
 LCS     160       M     4    6   22       C        1   1   1   2   2   4   5   5   6   6   8   8   8   9  10  11  12  14  15  15  
 LCS     161       D     4    6   22       C        1   1   1   2   2   3   5   5   6   6   8   8   9  10  12  12  13  14  15  15  
 LCS     162       T     4    6   22       H        1   1   1   2   2   4   5   5   6   6   8   8   9  10  12  12  13  14  15  15  
 LCS     163       E     4    6   22       H        1   1   1   2   2   4   5   5   6   6   8   8   8   9  12  12  13  14  15  15  
 LCS     164       I     4    6   22       H        1   1   1   1   2   2   3   5   6   6   8   8   8   9  10  11  12  14  15  15  
 LCS     165       T     4    6   22       H        1   1   1   1   2   2   3   5   5   6   8   8   8   9  10  11  12  14  15  15  
 LCS     166       K     3    4   22       H        1   1   1   1   1   2   2   3   4   4   5   7   8   9  10  11  11  13  15  15  
 LCS     167       A     4    4   22       H        1   1   1   1   2   2   3   3   5   7   7   8   8   9  10  11  12  14  15  15  
 LCS     168       K     4    4   19       H        1   1   1   1   2   2   2   3   6   7   7   7   8   8  10  11  12  13  15  15  
 LCS     169       I     4    4   19       H        1   1   1   1   2   2   3   5   6   7   7   8   8   9  10  11  12  14  15  15  
 LCS     170       I     4    4   19       H        1   1   1   2   2   3   4   5   6   7   7   8   8   9  10  11  12  14  15  15  
 LCS     171       G     3    4   19       H        1   1   1   2   2   3   4   5   6   7   7   8   8   8  10  11  12  14  15  15  
 LCS     172       F     3    5   19       H        1   1   1   2   2   3   4   5   6   7   7   8   8   8  10  11  12  14  15  15  
 LCS     173       G     3    5   19       C        1   1   1   1   2   3   4   5   6   7   7   8   8   9  10  11  12  14  15  15  
 LCS     174       S     3    5   11       C        1   1   1   1   2   2   3   5   5   7   7   8   8  10  12  12  13  14  15  15  
 LCS     175       A     3    5    9       E        1   1   1   2   2   3   3   4   5   5   6   8   9  10  12  12  13  14  15  15  
 LCS     176       L     3    5    9       E        1   1   1   1   2   2   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS     177       L     3    3    9       E        1   1   1   1   2   2   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS     178       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     179       E     3    3   11       C        0   1   1   1   1   1   1   2   3   3   5   5   5   6   7   7  10  12  13  13  
 LCS     180       V     4    4   12       C        1   1   1   1   2   2   2   3   3   4   5   5   7   7   7   8  10  12  13  13  
 LCS     181       D     4    4   12       C        1   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8  10  12  13  13  
 LCS     182       P     4    6   12       C        1   1   1   1   2   2   3   4   5   6   6   7   7   8   8   8  10  12  13  13  
 LCS     183       N     4    6   12       C        0   1   1   1   2   2   3   3   4   5   6   6   7   8   8   8  10  10  11  12  
 LCS     184       P     4    6   12       C        1   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8  10  10  11  12  
 LCS     185       A     4    6   12       C        1   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8  10  13  15  15  
 LCS     186       N     4    6   13       C        1   1   1   2   2   2   3   5   5   6   6   8   8   9  10  11  12  14  15  15  
 LCS     187       F     4    6   21       E        1   1   1   2   2   3   4   5   5   6   7   7   8   9  10  11  12  14  15  15  
 LCS     188       V     4    5   21       E        1   1   1   2   2   3   4   5   6   7   7   8   9   9  10  11  12  14  15  15  
 LCS     189       G     4    8   21       E        1   1   1   2   3   3   3   4   4   6   8   8   9   9  10  10  10  12  13  13  
 LCS     190       A     4    8   21       E        1   1   2   2   3   3   3   4   4   6   8   8   9   9  10  10  10  11  13  13  
 LCS     191       G     6    8   21       E        1   2   2   2   3   3   3   4   4   6   8   8   9   9  10  10  10  10  12  12  
 LCS     192       I     6    8   21       E        1   2   2   2   3   3   3   4   4   6   8   8   9   9  10  10  10  12  13  13  
 LCS     193       I     6    8   21       E        1   2   2   2   3   3   3   4   4   6   8   8   9   9  10  10  10  12  13  13  
 LCS     194       H     6    8   21       E        1   2   2   2   3   3   3   4   4   6   8   8   9   9  10  10  10  12  13  13  
 LCS     195       T     6    8   21       C        1   2   2   2   3   3   3   4   4   6   8   8   9   9  10  10  10  12  13  13  
 LCS     196       K     6    8   21       C        1   1   2   2   2   3   3   4   4   4   6   8   8   9  10  10  10  12  13  13  
 LCS     197       T     4    8   21       C        1   1   1   1   2   3   4   5   5   6   8   8   9   9  10  10  10  12  13  13  
 LCS     198       T     3   10   21       C        1   1   3   4   4   4   5   5   5   6   8   8   9   9  10  10  10  12  13  13  
 LCS     199       Q     7   10   21       E        1   2   3   4   4   4   5   5   5   6   8   8   9   9  10  10  10  12  13  13  
 LCS     200       I     7   10   21       E        1   2   3   4   4   4   5   5   5   6   8   8   9   9  10  10  10  12  13  13  
 LCS     201       G     7   10   21       E        1   2   3   4   4   4   5   5   5   6   8   8   9   9  10  10  10  12  13  13  
 LCS     202       C     7   10   21       E        1   2   3   4   4   4   5   5   5   6   8   8   9   9  10  10  10  12  13  13  
 LCS     203       L     7   10   21       E        1   2   3   4   4   4   5   5   5   6   8   8   9   9  10  10  10  12  13  13  
 LCS     204       L     7   10   21       E        1   2   3   4   4   4   5   5   5   6   8   8   9   9  10  10  10  12  13  13  
 LCS     205       R     7   10   21       E        1   2   3   4   4   4   5   5   5   6   8   8   9   9  10  10  10  12  13  14  
 LCS     206       L     6   10   21       E        1   2   3   4   4   4   5   5   5   6   8   8   9   9  10  11  13  14  15  15  
 LCS     207       E     6   10   21       E        1   2   2   4   4   4   5   5   5   6   8   8   9   9  11  12  13  13  14  15  
 LCS     208       P     4    5   18       E        1   1   1   1   2   2   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS     209       N     4    7   17       E        1   1   1   2   2   2   2   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS     210       L     4    7   15       C        1   1   1   2   2   2   2   4   4   5   6   6   9   9  10  12  13  13  14  15  
 LCS     211       Q     4    7   15       C        1   1   2   2   2   2   2   4   4   4   6   6   7   7   8   8   9  10  11  12  
 LCS     212       A     4    7   15       C        1   1   2   2   2   2   2   4   4   4   5   6   6   7   8   8   9   9  10  12  
 LCS     213       Q     4    7   15       C        1   1   2   2   2   2   2   4   5   5   5   5   6   7   8  10  10  10  11  11  
 LCS     214       M     4    7   15       E        1   1   2   4   4   4   5   5   5   5   6   8   9   9  10  10  10  10  11  11  
 LCS     215       Y     4    7   15       E        0   1   2   2   2   4   5   5   5   6   8   8   9   9  10  10  10  12  14  15  
 LCS     216       R     3    4   15       E        1   1   1   2   3   3   3   4   4   5   7   8   9   9  10  10  10  12  13  15  
 LCS     217       L     3    4   15       E        1   1   1   1   1   2   3   4   4   5   6   6   7   7   9  10  12  13  14  15  
 LCS     218       T     3    4   15       E        1   1   1   2   2   2   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS     219       L     3    4   15       E        1   1   1   1   2   2   3   4   4   5   6   7   9  10  12  12  13  13  14  15  
 LCS     220       R     4    6   15       E        1   1   1   2   3   3   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS     221       T     4    6   15       E        1   1   1   2   3   3   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS     222       S     4    6   15       C        1   1   1   2   3   3   3   4   4   5   5   8   9  10  12  12  13  13  14  15  
 LCS     223       K     4    6   15       C        1   1   1   2   3   3   3   4   4   5   5   5   6   9  12  12  13  13  14  15  
 LCS     224       D     3    6   15       H        1   1   1   2   2   3   3   4   4   5   6   8   9  10  12  12  13  13  14  15  
 LCS     225       T     4    6   15       H        1   1   1   2   3   3   3   4   4   5   6   8   9  10  12  12  13  13  14  15  
 LCS     226       V     4    5   15       H        1   1   1   2   2   2   3   4   4   5   6   8   9  10  12  12  13  13  14  15  
 LCS     227       S     4    5   15       H        1   1   1   2   2   2   3   3   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS     228       Q     4    5   15       H        1   1   1   2   3   3   3   4   5   5   6   8   9  10  12  12  13  13  14  15  
 LCS     229       R     3    5   15       H        1   1   1   2   3   3   3   3   4   4   5   6   6   8   9  11  13  13  14  15  
 LCS     230       L     3    4   15       H        1   1   1   2   3   3   3   3   4   4   5   6   6   7   8   8  10  10  10  12  
 LCS     231       C     3    4   14       H        1   1   1   1   2   3   3   3   4   4   4   4   5   5   5   5   7   8   8   8  
 LCS     232       E     3    4   14       H        1   1   1   1   1   2   2   2   2   3   4   4   4   5   5   5   6   6   6   7  
 LCS     233       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     234       L     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     235       S     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     236       E     3    3    3       C        1   1   1   1   1   2   2   2   2   3   4   4   4   4   5   5   6   6   6   7  
 LCS     237       Q     3    3    3       C        1   1   1   1   1   2   2   2   2   3   4   4   4   4   5   5   6   6   6   7  
 LCS     238       F     3    3    3       C        1   1   1   1   1   1   1   1   1   1   4   4   4   4   5   5   5   6   6   7  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.18 
 
 NUMBER_OF_CA_Tg:  237      NUMBER_OF_CA_Pr:  164      PERCENT_OF_CA:  69.20  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       4       6       8      10      11      11      12      13      15      17      19      20      22      24      29      30      32      34      36      37  
 GDT PERCENT_OF_CA_Pr    2.44    3.66    4.88    6.10    6.71    6.71    7.32    7.93    9.15   10.37   11.59   12.20   13.41   14.63   17.68   18.29   19.51   20.73   21.95   22.56 
 GDT PERCENT_OF_CA_Tg    1.69    2.53    3.38    4.22    4.64    4.64    5.06    5.49    6.33    7.17    8.02    8.44    9.28   10.13   12.24   12.66   13.50   14.35   15.19   15.61 
 GDT FRAGMENT: Beg-End 199-202 199-204 199-206 198-207 198-214 198-214 198-215 146-163 146-164 145-188 147-165 146-165 188-216  86-228  84-228  84-228  84-229 144-206 144-206 144-206 
 GDT RMS_LOCAL           0.10    0.71    1.20    1.37    1.49    1.49    1.92    2.75    3.20    3.56    3.87    3.98    4.85    5.46    5.92    6.00    6.22    6.64    6.82    6.92 
 GDT RMS_ALL_CA         39.07   35.46   32.97   32.83   32.88   32.88   32.58   32.13   32.51   34.70   33.02   33.17   31.33   24.52   24.62   24.57   24.45   33.51   34.05   33.79 
 
 
 TEST (CA)  RMS =  23.10               (Number of atoms:  164) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   23.10        164    69.2   237     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1408                            CRMSCA  
     SECONDARY STRUCTURE . .   22.79         94    66.2   142     CRMSCA  
     SURFACE . . . . . . . .   24.48         92    68.7   134     CRMSCA  
     BURIED  . . . . . . . .   21.20         72    69.9   103     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   23.06        656    56.0  1172     CRMSMC  
     SECONDARY STRUCTURE . .   22.75        376    53.6   702     CRMSMC  
     SURFACE . . . . . . . .   24.41        368    55.6   662     CRMSMC  
     BURIED  . . . . . . . .   21.21        288    56.5   510     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   926     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   762     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   598     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   507     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   419     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   23.06        656    35.0  1874     CRMSALL 
     SECONDARY STRUCTURE . .   22.75        376    32.2  1166     CRMSALL 
     SURFACE . . . . . . . .   24.41        368    35.3  1043     CRMSALL 
     BURIED  . . . . . . . .   21.21        288    34.7   831     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   20.452      1.000       0.500    164    69.2   237     ERRCA  
     SECONDARY STRUCTURE . .   19.659      1.000       0.500     94    66.2   142     ERRCA  
     SURFACE . . . . . . . .   21.816      1.000       0.500     92    68.7   134     ERRCA  
     BURIED  . . . . . . . .   18.708      1.000       0.500     72    69.9   103     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   20.437      1.000       0.500    656    56.0  1172     ERRMC  
     SECONDARY STRUCTURE . .   19.684      1.000       0.500    376    53.6   702     ERRMC  
     SURFACE . . . . . . . .   21.727      1.000       0.500    368    55.6   662     ERRMC  
     BURIED  . . . . . . . .   18.788      1.000       0.500    288    56.5   510     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   926     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   762     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   598     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   507     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   419     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   20.437      1.000       0.500    656    35.0  1874     ERRALL 
     SECONDARY STRUCTURE . .   19.684      1.000       0.500    376    32.2  1166     ERRALL 
     SURFACE . . . . . . . .   21.727      1.000       0.500    368    35.3  1043     ERRALL 
     BURIED  . . . . . . . .   18.788      1.000       0.500    288    34.7   831     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         0         4        23     164     237   DISTCA 
CA  (P)      0.00      0.00      0.00      1.69      9.70             237   DISTCA 
CA  (RMS)    0.00      0.00      0.00      4.31      7.43                   DISTCA 
 
ALL (N)         0         0         3        16        89     656    1874   DISTALL 
ALL (P)      0.00      0.00      0.16      0.85      4.75            1874   DISTALL 
ALL (RMS)    0.00      0.00      2.71      4.00      7.43                   DISTALL 
 
 
 
 
END of the results output 
