 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 0 0 , MODEL 0 , TARGET 237 
 
# WARNING! TARGET 1874 atoms, MODEL 1302 atoms, 1282 common with TARGET 
           Number of atoms possible to evaluate: 84 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   472     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   284     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   267     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   205     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   211     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   198     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   131     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   116     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    95     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   161     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   116     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   103     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    91     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    20     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    13     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    7 - 12   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6      7 - 12       3.73     3.73 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   20 - 26   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     20 - 26       1.75     1.75 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   34 - 42   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     34 - 42       0.81     0.81 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   49 - 58   10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     49 - 58       1.78     1.78 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   62 - 68   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     62 - 68       1.95     1.95 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6   73 - 79   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     73 - 79       1.89     1.89 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  7   83 - 95   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13     83 - 95       2.64     2.64 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  8   98 - 107  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     98 - 107      1.37     1.37 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  9  111 - 125  15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    111 - 125      2.78     2.78 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    7 - 12   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4      7 - 10       1.82     6.08 
  LONGEST_CONTINUOUS_SEGMENT     4      9 - 12       1.59     5.69 
  LCS LOCAL_SCORE:             66.67 
 
 FRAGMENT  2   20 - 26   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     20 - 26       1.75     1.75 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   34 - 42   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     34 - 42       0.81     0.81 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   49 - 58   10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     49 - 58       1.78     1.78 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   62 - 68   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     62 - 68       1.95     1.95 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6   73 - 79   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     73 - 79       1.89     1.89 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  7   83 - 95   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     83 - 94       1.99     3.06 
  LCS LOCAL_SCORE:             90.53 
 
 FRAGMENT  8   98 - 107  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     98 - 107      1.37     1.37 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  9  111 - 125  15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    111 - 123      1.71     3.05 
  LCS LOCAL_SCORE:             78.67 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    7 - 12   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     3      7 - 9        0.17     7.18 
  LONGEST_CONTINUOUS_SEGMENT     3      8 - 10       0.78     6.45 
  LONGEST_CONTINUOUS_SEGMENT     3      9 - 11       0.57     6.08 
  LONGEST_CONTINUOUS_SEGMENT     3     10 - 12       0.79     8.11 
  LCS LOCAL_SCORE:             50.00 
 
 FRAGMENT  2   20 - 26   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     21 - 26       0.74     2.29 
  LCS LOCAL_SCORE:             79.59 
 
 FRAGMENT  3   34 - 42   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     34 - 42       0.81     0.81 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   49 - 58   10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     52 - 58       0.78     2.59 
  LCS LOCAL_SCORE:             60.00 
 
 FRAGMENT  5   62 - 68   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     64 - 68       0.89     3.45 
  LCS LOCAL_SCORE:             63.27 
 
 FRAGMENT  6   73 - 79   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     75 - 79       0.23     3.47 
  LCS LOCAL_SCORE:             63.27 
 
 FRAGMENT  7   83 - 95   13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     83 - 90       0.85     4.47 
  LCS LOCAL_SCORE:             52.66 
 
 FRAGMENT  8   98 - 107  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     99 - 105      0.91     1.94 
  LONGEST_CONTINUOUS_SEGMENT     7    100 - 106      0.97     1.88 
  LCS LOCAL_SCORE:             65.00 
 
 FRAGMENT  9  111 - 125  15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    111 - 120      0.88     3.11 
  LCS LOCAL_SCORE:             53.33 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       7       R     3    4    6       -        1   1   1   1   1   2   2   3   3   4   4   5   5   5   6   7   8   8   9   9  
 LCS       8       F     3    4    6       -        1   1   1   1   1   2   2   3   3   4   4   5   5   5   6   7   8   8   9   9  
 LCS       9       V     3    4    6       -        1   1   1   1   1   2   2   3   3   4   4   5   5   5   6   7   8   8   9   9  
 LCS      10       C     3    4    6       -        0   1   1   1   1   1   2   2   2   2   2   5   5   5   6   7   8   8   9   9  
 LCS      11       K     3    4    6       -        0   1   1   1   1   1   2   2   2   2   2   2   3   3   4   4  24  24  25  25  
 LCS      12       N     3    4    6       -        0   1   1   1   1  11  13  13  14  15  16  17  20  22  24  24  24  25  30  30  
 LCS      13       N     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      14       G     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      15       V     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      16       L     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      17       F     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      18       E     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      19       N     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      20       Q     3    7    7       -        1   1   1   2   2   3   4   5   5   5   8  10  11  13  19  22  25  27  27  29  
 LCS      21       L     6    7    7       -        2   2   2   2   3   3   4   5   5   5   5   7   8   8  10  12  13  13  15  20  
 LCS      22       L     6    7    7       -        2   2   2   2   3   3   4   5   5   5   6   8   9  11  12  13  14  17  19  27  
 LCS      23       Q     6    7    7       -        2   2   2   2   3   3   4   5   5   5   6   8   9  11  12  13  14  17  19  20  
 LCS      24       I     6    7    7       -        2   2   2   2   3   3   4   5   5   5   6  10  11  12  13  14  14  21  25  27  
 LCS      25       G     6    7    7       -        2   2   2   2   3   3   4   5   5   5   6  10  11  12  13  14  14  21  25  27  
 LCS      26       L     6    7    7       -        1   2   2   2   3   3   4   5   5   5   8  10  11  12  13  14  14  21  25  27  
 LCS      27       K     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      28       S     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      29       E     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      30       F     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      31       R     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      32       Q     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      33       N     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      34       L     9    9    9       -        1   4   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      35       G     9    9    9       -        2   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      36       R     9    9    9       -        3   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      37       M     9    9    9       -        3   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      38       F     9    9    9       -        3   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      39       I     9    9    9       -        3   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      40       F     9    9    9       -        2   5   9  10  12  13  14  16  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      41       Y     9    9    9       -        2   5   7  10  12  13  14  15  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      42       G     9    9    9       -        2   6   9  10  12  13  15  16  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      43       N     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      44       K     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      45       T     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      46       S     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      47       T     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      48       Q     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      49       F     3   10   10       -        1   1   2   7  10  13  14  14  15  18  21  21  23  24  24  28  29  29  30  30  
 LCS      50       L     4   10   10       -        1   1   2   9  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      51       N     4   10   10       -        1   1   2   2   2  11  14  14  16  19  21  21  23  24  25  28  29  29  30  30  
 LCS      52       F     7   10   10       -        2   5   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      53       T     7   10   10       -        1   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      54       P     7   10   10       -        2   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      55       T     7   10   10       -        2   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      56       L     7   10   10       -        2   5   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      57       I     7   10   10       -        1   2   2   8  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      58       C     7   10   10       -        1   2   3   8  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      59       A     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      60       D     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      61       D     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      62       L     3    7    7       -        1   1   5   7   8  11  12  13  15  16  19  21  22  24  24  24  25  29  30  30  
 LCS      63       Q     3    7    7       -        1   1   1   1  11  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      64       T     5    7    7       -        1   1   1  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      65       N     5    7    7       -        2   5   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      66       L     5    7    7       -        1   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      67       N     5    7    7       -        3   5   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      68       L     5    7    7       -        3   5   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      69       Q     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      70       T     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      71       K     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      72       P     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      73       V     3    7    7       -        0   1   1   4   7   7   8  10  13  13  13  16  21  24  27  28  29  29  30  30  
 LCS      74       D     3    7    7       -        0   1   1   1   2   7   8  10  13  13  13  16  21  24  27  28  29  29  30  30  
 LCS      75       P     5    7    7       -        2   3   4   5   6   7   8  10  13  19  21  22  23  24  27  28  29  29  30  30  
 LCS      76       T     5    7    7       -        2   3   4   5   7   7   8  10  13  19  21  22  23  24  27  28  29  29  30  30  
 LCS      77       V     5    7    7       -        2   3   4   5   7   7   8  10  14  20  21  22  23  24  27  28  29  29  30  30  
 LCS      78       D     5    7    7       -        2   3   4   5   7   7   8  10  13  13  19  22  23  24  27  28  29  29  30  30  
 LCS      79       G     5    7    7       -        2   3   4   5   7   7   8   8  13  13  19  22  23  24  27  28  29  29  30  30  
 LCS      80       G     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      81       A     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      82       Q     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      83       V     8   12   13       -        1   5   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      84       Q     8   12   13       -        1   5   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      85       Q     8   12   13       -        1   2   6  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      86       V     8   12   13       -        2   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      87       I     8   12   13       -        3   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      88       N     8   12   13       -        3   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      89       I     8   12   13       -        3   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      90       E     8   12   13       -        2   6   9  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      91       C     7   12   13       -        1   2   7  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      92       I     7   12   13       -        1   2   7  10  12  13  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      93       S     5   12   13       -        0   1   2   3   4   5  14  17  18  20  21  22  23  24  25  28  29  29  30  30  
 LCS      94       D     3   12   13       -        0   1   2   2   4   5   8   9   9  16  21  21  23  24  24  28  29  29  30  30  
 LCS      95       F     3    9   13       -        0   1   1   1   4   5   6  15  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS      96       T     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      97       E     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      98       A     5   10   10       -        1   2   3   3   4   4   6  10  13  13  13  13  16  24  27  28  29  29  30  30  
 LCS      99       P     7   10   10       -        1   2   3   3   4   4   6  10  13  13  13  13  14  20  27  28  29  29  30  30  
 LCS     100       V     7   10   10       -        2   2   3   3   4   4   7  10  13  13  13  13  14  23  27  28  29  29  30  30  
 LCS     101       L     7   10   10       -        1   2   2   3   4   4   6  10  13  13  13  13  14  20  27  28  29  29  30  30  
 LCS     102       N     7   10   10       -        2   2   3   3   4   4   7  10  13  13  13  13  21  24  27  28  29  29  30  30  
 LCS     103       I     7   10   10       -        2   2   3   3   4   4   6  10  13  13  13  13  14  24  27  28  29  29  30  30  
 LCS     104       Q     7   10   10       -        2   2   3   3   4   4   6  10  13  13  13  13  14  24  27  28  29  29  30  30  
 LCS     105       F     7   10   10       -        2   2   3   3   4   4   6  10  13  13  13  13  14  24  27  28  29  29  30  30  
 LCS     106       R     7   10   10       -        1   2   3   3   4   4   6  10  13  13  13  13  14  20  27  28  29  29  30  30  
 LCS     107       Y     4   10   10       -        1   1   2   3   4   4   7  10  13  13  13  13  21  24  27  28  29  29  30  30  
 LCS     108       G     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     109       G     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     110       T     0    0    0       -        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     111       F    10   13   15       -        1   3   4   5   7   7   8  16  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     112       Q    10   13   15       -        1   3   4   5   7   8  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     113       N    10   13   15       -        2   3   4   5   7   8  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     114       V    10   13   15       -        2   3   4   5   7  10  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     115       S    10   13   15       -        2   3   4   5   7  11  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     116       V    10   13   15       -        2   3   4   5   7  11  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     117       K    10   13   15       -        2   3   4   5   7  11  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     118       L    10   13   15       -        2   3   4   5   7   7  10  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     119       P    10   13   15       -        1   2   4   4   5   7   8  10  18  19  21  22  23  24  27  28  29  29  30  30  
 LCS     120       I    10   13   15       -        1   3   4   5   7   7   8  11  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     121       T     4   13   15       -        1   3   4   5   7   8  12  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     122       L     4   13   15       -        1   3   4   5   7   9  15  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     123       N     4   13   15       -        1   1   2   5   7   7  12  17  18  20  21  22  23  24  27  28  29  29  30  30  
 LCS     124       K     4    4   15       -        1   1   1   1   1   4   7  10  13  13  13  13  14  23  27  28  29  29  30  30  
 LCS     125       F     4    4   15       -        1   1   1   1   2   4   4   5   7   8   9  10  13  20  25  28  29  29  30  30  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.95 
 
 NUMBER_OF_CA_Tg:  237      NUMBER_OF_CA_Pr:   84      PERCENT_OF_CA:  35.44  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       9      15      23      26      30      32      37      41      45      48      51      53      56      57      65      68      69      70      72      72  
 GDT PERCENT_OF_CA_Pr   10.71   17.86   27.38   30.95   35.71   38.10   44.05   48.81   53.57   57.14   60.71   63.10   66.67   67.86   77.38   80.95   82.14   83.33   85.71   85.71 
 GDT PERCENT_OF_CA_Tg    3.80    6.33    9.70   10.97   12.66   13.50   15.61   17.30   18.99   20.25   21.52   22.36   23.63   24.05   27.43   28.69   29.11   29.54   30.38   30.38 
 GDT FRAGMENT: Beg-End  36-89   35-90   34-90   34-90   34-92   34-92   34-122  34-123  34-123  34-123  34-123  34-123  34-123  34-123  34-124  34-125  34-124  34-125  12-125  12-125 
 GDT RMS_LOCAL           0.33    0.81    1.05    1.17    1.52    1.64    2.60    2.84    3.02    3.28    3.59    3.76    3.90    3.97    5.24    5.37    5.36    5.45    5.60    5.60 
 GDT RMS_ALL_CA         10.30    9.85    9.78    9.85    9.62    9.62    9.00    8.91    8.88    8.80    8.71    8.68    8.71    8.73    8.53    8.53    8.51    8.51    8.51    8.51 
 
 
 TEST (CA)  RMS =   8.48               (Number of atoms:   84) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    8.48         84    35.4   237     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1010                            CRMSCA  
     SECONDARY STRUCTURE . .    7.11         54    38.0   142     CRMSCA  
     SURFACE . . . . . . . .    8.26         37    27.6   134     CRMSCA  
     BURIED  . . . . . . . .    8.65         47    45.6   103     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    8.48         84     7.2  1172     CRMSMC  
     SECONDARY STRUCTURE . .    7.11         54     7.7   702     CRMSMC  
     SURFACE . . . . . . . .    8.26         37     5.6   662     CRMSMC  
     BURIED  . . . . . . . .    8.65         47     9.2   510     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   926     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   762     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   598     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   507     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   419     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    8.48         84     4.5  1874     CRMSALL 
     SECONDARY STRUCTURE . .    7.11         54     4.6  1166     CRMSALL 
     SURFACE . . . . . . . .    8.26         37     3.5  1043     CRMSALL 
     BURIED  . . . . . . . .    8.65         47     5.7   831     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    6.961      1.000       0.500     84    35.4   237     ERRCA  
     SECONDARY STRUCTURE . .    6.031      1.000       0.500     54    38.0   142     ERRCA  
     SURFACE . . . . . . . .    6.728      1.000       0.500     37    27.6   134     ERRCA  
     BURIED  . . . . . . . .    7.144      1.000       0.500     47    45.6   103     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    6.961      1.000       0.500     84     7.2  1172     ERRMC  
     SECONDARY STRUCTURE . .    6.031      1.000       0.500     54     7.7   702     ERRMC  
     SURFACE . . . . . . . .    6.728      1.000       0.500     37     5.6   662     ERRMC  
     BURIED  . . . . . . . .    7.144      1.000       0.500     47     9.2   510     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   926     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   762     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   598     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   507     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   419     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    6.961      1.000       0.500     84     4.5  1874     ERRALL 
     SECONDARY STRUCTURE . .    6.031      1.000       0.500     54     4.6  1166     ERRALL 
     SURFACE . . . . . . . .    6.728      1.000       0.500     37     3.5  1043     ERRALL 
     BURIED  . . . . . . . .    7.144      1.000       0.500     47     5.7   831     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         2        10        47        71      84     237   DISTCA 
CA  (P)      0.00      0.84      4.22     19.83     29.96             237   DISTCA 
CA  (RMS)    0.00      1.90      2.49      3.99      5.56                   DISTCA 
 
ALL (N)         0         2        10        47        71      84    1874   DISTALL 
ALL (P)      0.00      0.11      0.53      2.51      3.79            1874   DISTALL 
ALL (RMS)    0.00      1.90      2.49      3.99      5.56                   DISTALL 
 
 
 
 
END of the results output 
