 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 93 , MODEL 93 , TARGET 237 
#          The number of residues possible to evaluate: 93 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP     2     E     C     C             1.00 
 SSP     3     D     C     C             1.00 
 SSP     4     N     C     C             1.00 
 SSP     5     F     H     C             1.00 
 SSP     6     A     H     C             1.00 
 SSP     7     R     H     C             1.00 
 SSP     8     F     H     E             1.00 
 SSP     9     V     C     E             1.00 
 SSP    10     C     C     C             1.00 
 SSP  BREAK 
 SSP    13     N     C     C             1.00 
 SSP    14     G     E     C             1.00 
 SSP    15     V     E     E             1.00 
 SSP    16     L     E     E             1.00 
 SSP    17     F     E     E             1.00 
 SSP    18     E     E     C             1.00 
 SSP  BREAK 
 SSP    21     L     C     C             1.00 
 SSP    22     L     E     E             1.00 
 SSP    23     Q     E     E             1.00 
 SSP    24     I     E     E             1.00 
 SSP    25     G     E     E             1.00 
 SSP    26     L     E     E             1.00 
 SSP    27     K     E     E             1.00 
 SSP    28     S     E     E             1.00 
 SSP    29     E     E     C             1.00 
 SSP    30     F     E     C             1.00 
 SSP    31     R     E     C             1.00 
 SSP  BREAK 
 SSP    37     M     E     C             1.00 
 SSP    38     F     E     E             1.00 
 SSP    39     I     E     E             1.00 
 SSP    40     F     E     E             1.00 
 SSP    41     Y     E     E             1.00 
 SSP    42     G     E     E             1.00 
 SSP    43     N     E     C             1.00 
 SSP  BREAK 
 SSP    49     F     E     C             1.00 
 SSP    50     L     E     E             1.00 
 SSP    51     N     E     E             1.00 
 SSP    52     F     E     E             1.00 
 SSP    53     T     E     C             1.00 
 SSP    54     P     E     C             1.00 
 SSP    55     T     E     E             1.00 
 SSP    56     L     E     E             1.00 
 SSP    57     I     E     E             1.00 
 SSP    58     C     C     E             1.00 
 SSP    59     A     C     C             1.00 
 SSP  BREAK 
 SSP    61     D     H     C             1.00 
 SSP    62     L     H     E             1.00 
 SSP    63     Q     H     E             1.00 
 SSP    64     T     H     E             1.00 
 SSP    65     N     H     E             1.00 
 SSP    66     L     E     E             1.00 
 SSP    67     N     E     E             1.00 
 SSP    68     L     E     E             1.00 
 SSP    69     Q     E     C             1.00 
 SSP    70     T     E     C             1.00 
 SSP    71     K     C     C             1.00 
 SSP    72     P     C     C             1.00 
 SSP    73     V     C     C             1.00 
 SSP    74     D     C     C             1.00 
 SSP    75     P     C     C             1.00 
 SSP  BREAK 
 SSP    79     G     C     C             1.00 
 SSP    80     G     C     C             1.00 
 SSP    81     A     C     C             1.00 
 SSP    82     Q     E     C             1.00 
 SSP    83     V     E     C             1.00 
 SSP    84     Q     E     E             1.00 
 SSP    85     Q     E     E             1.00 
 SSP    86     V     E     E             1.00 
 SSP    87     I     E     E             1.00 
 SSP    88     N     E     E             1.00 
 SSP    89     I     E     E             1.00 
 SSP    90     E     E     E             1.00 
 SSP    91     C     E     E             1.00 
 SSP    92     I     C     C             1.00 
 SSP    93     S     C     C             1.00 
 SSP    94     D     C     C             1.00 
 SSP    95     F     C     C             1.00 
 SSP    96     T     C     C             1.00 
 SSP    97     E     C     C             1.00 
 SSP    98     A     C     C             1.00 
 SSP    99     P     C     C             1.00 
 SSP   100     V     E     C             1.00 
 SSP   101     L     E     C             1.00 
 SSP  BREAK 
 SSP   114     V     E     C             1.00 
 SSP   115     S     E     E             1.00 
 SSP   116     V     E     E             1.00 
 SSP   117     K     E     E             1.00 
 SSP   118     L     C     E             1.00 
 SSP   119     P     C     E             1.00 
 SSP   120     I     C     E             1.00 
 SSP   121     T     C     E             1.00 
 SSP   122     L     H     E             1.00 
 SSP   123     N     H     C             1.00 
 SSP   124     K     H     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              62.4       0.0     67.3     79.3     39.2 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        64.1       0.0     73.0     72.1     39.2 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           10              70.0              30.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            1                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      93    100.0     62.4 
 
 BIN  0.00 - 1.00      1.00      93    100.0     62.4 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 224 
 
# WARNING! TARGET 1874 atoms, MODEL 1538 atoms, 1525 common with TARGET 
           Number of atoms possible to evaluate: 372 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    72.84           44.7   170    36.0   472     ARMSMC  
     SECONDARY STRUCTURE . .    60.52           47.2   106    37.3   284     ARMSMC  
     SURFACE . . . . . . . .    74.08           45.8    83    31.1   267     ARMSMC  
     BURIED  . . . . . . . .    71.63           43.7    87    42.4   205     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   211     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   198     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   131     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   116     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    95     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   161     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   116     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   103     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    91     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    20     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    13     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    2 - 10   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9      2 - 10       3.22     3.22 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2   13 - 18   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     13 - 18       1.86     1.86 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   21 - 31   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     21 - 31       1.58     1.58 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   37 - 43   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     37 - 43       0.87     0.87 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   49 - 59   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     49 - 59       2.25     2.25 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6   61 - 75   15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15     61 - 75       4.29     4.29 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  7   79 - 101  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    23     79 - 101      4.96     4.96 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  8  114 - 124  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    114 - 124      2.60     2.60 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    2 - 10   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5      2 - 6        1.81     4.52 
  LCS LOCAL_SCORE:             48.15 
 
 FRAGMENT  2   13 - 18   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     13 - 18       1.86     1.86 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  3   21 - 31   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     21 - 31       1.58     1.58 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4   37 - 43   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     37 - 43       0.87     0.87 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   49 - 59   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8     50 - 57       1.90     2.59 
  LONGEST_CONTINUOUS_SEGMENT     8     52 - 59       1.90     2.66 
  LCS LOCAL_SCORE:             68.60 
 
 FRAGMENT  6   61 - 75   15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10     65 - 74       1.82     5.68 
  LCS LOCAL_SCORE:             53.78 
 
 FRAGMENT  7   79 - 101  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12     81 - 92       1.73    12.25 
  LCS LOCAL_SCORE:             42.72 
 
 FRAGMENT  8  114 - 124  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    114 - 123      1.65     2.75 
  LCS LOCAL_SCORE:             85.12 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    2 - 10   9    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4      2 - 5        0.33     4.61 
  LCS LOCAL_SCORE:             38.27 
 
 FRAGMENT  2   13 - 18   6    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     13 - 17       0.96     2.63 
  LCS LOCAL_SCORE:             77.78 
 
 FRAGMENT  3   21 - 31   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     22 - 28       0.77     2.15 
  LCS LOCAL_SCORE:             54.55 
 
 FRAGMENT  4   37 - 43   7    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7     37 - 43       0.87     0.87 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5   49 - 59   11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5     55 - 59       0.96     9.82 
  LCS LOCAL_SCORE:             38.84 
 
 FRAGMENT  6   61 - 75   15   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6     65 - 70       0.75     7.86 
  LCS LOCAL_SCORE:             29.78 
 
 FRAGMENT  7   79 - 101  23   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9     84 - 92       0.88     9.24 
  LCS LOCAL_SCORE:             25.90 
 
 FRAGMENT  8  114 - 124  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    114 - 118      0.87     3.19 
  LONGEST_CONTINUOUS_SEGMENT     5    116 - 120      0.60     4.55 
  LCS LOCAL_SCORE:             41.32 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       2       E     4    5    9       C        1   1   1   1   1   2   2   3   3   3   3   4   4   4   5   5   5   5   5   5  
 LCS       3       D     4    5    9       C        1   1   1   1   1   2   2   3   3   3   3   4   4   4   5   5   7   7   7   8  
 LCS       4       N     4    5    9       C        1   1   1   1   1   2   2   3   3   3   3   5   5   6   7   8   8   9  10  11  
 LCS       5       F     4    5    9       H        1   1   1   1   1   2   2   3   3   4   4   5   5   6   7   8   8   9  10  11  
 LCS       6       A     3    5    9       H        1   1   1   1   1   2   2   3   3   4   4   5   5   6   7   8   8   9   9  10  
 LCS       7       R     3    4    9       H        0   1   1   1   1   2   2   3   3   3   3   4   5   7   9  11  13  14  16  17  
 LCS       8       F     3    4    9       H        1   1   1   1   1   2   2   4   5   8  10  12  13  14  15  17  18  19  20  20  
 LCS       9       V     3    3    9       C        0   1   1   1   1   1   2   3   8   8  10  12  13  14  15  17  18  19  20  20  
 LCS      10       C     3    3    9       C        0   1   1   1   1   1   2   2   3   3   4   6   6   6   6  11  12  14  16  19  
 LCS      11       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      12       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      13       N     5    6    6       C        1   1   2   2   2   4   6   7   8   9  10  12  13  14  15  17  18  19  20  20  
 LCS      14       G     5    6    6       E        1   1   2   2   2   2   6   7   8   9  10  12  13  14  15  17  18  19  20  20  
 LCS      15       V     5    6    6       E        1   1   2   2   2   4   6   6   8   9  10  12  13  14  15  17  18  19  20  20  
 LCS      16       L     5    6    6       E        1   1   2   2   2   2   2   2   2   5   5   7   8   8  10  11  15  16  16  18  
 LCS      17       F     5    6    6       E        0   1   2   2   2   2   2   2   5   5   5   7   8   9  10  11  15  16  16  18  
 LCS      18       E     3    6    6       E        0   1   1   1   2   2   3   4   5   5   8   8   8  12  13  14  15  16  17  18  
 LCS      19       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      20       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      21       L     6   11   11       C        1   2   3   4   5   6   7   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      22       L     7   11   11       E        1   2   3   4   5   6   7   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      23       Q     7   11   11       E        1   2   3   4   5   6   7   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      24       I     7   11   11       E        1   2   3   4   5   6   7   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      25       G     7   11   11       E        1   2   3   4   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      26       L     7   11   11       E        1   2   3   4   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      27       K     7   11   11       E        1   2   3   4   5   6   8   9  11  12  14  14  14  15  15  16  17  19  20  20  
 LCS      28       S     7   11   11       E        1   2   3   4   5   6   8   9  11  12  14  14  14  15  15  16  18  19  20  20  
 LCS      29       E     4   11   11       E        1   2   3   4   5   6   8   9  11  12  14  14  14  15  15  16  18  19  20  20  
 LCS      30       F     4   11   11       E        1   2   3   4   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      31       R     3   11   11       E        1   1   1   2   5   5   6   8  10  12  14  14  14  15  15  16  17  19  20  20  
 LCS      32       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      33       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      34       L     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      35       G     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      36       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      37       M     7    7    7       E        1   2   2   2   2   2   3   3   4   5   5   5   5   5   6   6  12  16  16  16  
 LCS      38       F     7    7    7       E        1   2   2   2   2   2   3   3   4   5   5   5   5   5   6   6   6   8  16  16  
 LCS      39       I     7    7    7       E        1   2   2   2   2   2   3   3   4   5   5   5   5   5   7   8  12  13  16  16  
 LCS      40       F     7    7    7       E        1   2   2   2   2   2   3   3   4   5   5   5   5   5   6   8   8   9  16  16  
 LCS      41       Y     7    7    7       E        1   2   2   2   2   2   3   3   4   5   5   5   5   6   7   8   8  13  16  16  
 LCS      42       G     7    7    7       E        1   2   2   2   2   2   3   3   4   5   5   5   5   6   7   8   8   9  10  11  
 LCS      43       N     7    7    7       E        1   2   2   2   2   2   3   3   4   4   4   5   5   6   7   8   8   9  10  11  
 LCS      44       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      45       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      46       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      47       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      48       Q     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      49       F     3    3   11       E        1   1   1   1   2   4   5   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      50       L     4    8   11       E        1   1   1   2   2   5   6   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      51       N     4    8   11       E        1   1   1   2   2   4   6   9  10  12  14  14  14  15  15  17  18  19  20  20  
 LCS      52       F     4    8   11       E        0   1   2   2   2   4   6   9  10  12  14  14  14  15  15  17  18  19  20  20  
 LCS      53       T     4    8   11       E        0   1   2   2   3   5   6   7  10  10  11  13  14  15  15  16  18  19  20  20  
 LCS      54       P     3    8   11       E        1   1   2   3   4   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      55       T     5    8   11       E        1   1   2   2   2   4   6   9  10  12  14  14  14  15  15  17  18  19  20  20  
 LCS      56       L     5    8   11       E        1   1   2   2   2   5   6   9  10  12  14  14  14  15  15  17  18  19  20  20  
 LCS      57       I     5    8   11       E        1   1   2   2   2   4   6   7   8  10  10  12  13  14  15  17  18  19  20  20  
 LCS      58       C     5    8   11       C        1   1   2   2   2   4   6   7   8  10  10  12  13  14  14  16  18  18  20  20  
 LCS      59       A     5    8   11       C        1   1   2   2   2   4   5   7   8  10  10  12  13  14  14  14  15  16  17  18  
 LCS      60       D     0    0    0       H        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      61       D     3    3   15       H        0   1   1   1   1   1   2   2   2   3   4   4   5   8   9  12  13  14  15  16  
 LCS      62       L     3    3   15       H        1   1   1   1   1   1   2   2   2   3   5   7   8   8  11  12  13  14  16  17  
 LCS      63       Q     3    3   15       H        1   1   1   1   1   1   1   2   2   3   4   5   5   6   8  10  10  11  13  13  
 LCS      64       T     3    7   15       H        1   1   1   1   2   2   4   5   5   5   5   5   5   6   6   6   6   6   6   7  
 LCS      65       N     6   10   15       H        1   2   2   3   3   3   4   5   5   5   5   6   6   6   6   6   6   8   8   8  
 LCS      66       L     6   10   15       E        1   2   2   3   3   3   4   5   5   5   5   6   6   6   6   6   7   8   8   8  
 LCS      67       N     6   10   15       E        1   2   2   3   4   4   4   5   5   5   5   6   6   6   6   6   7   8   8   8  
 LCS      68       L     6   10   15       E        1   2   2   3   3   3   4   5   5   5   5   6   6   6   6   6   7   8   8   8  
 LCS      69       Q     6   10   15       E        1   2   2   3   3   3   4   5   5   5   5   6   6   6   6   6   6   8   8   8  
 LCS      70       T     6   10   15       E        1   2   2   2   3   3   4   5   5   5   5   6   6   6   6   6   6   8   8   8  
 LCS      71       K     4   10   15       C        1   1   2   3   3   3   4   5   5   5   5   6   6   6   6   6   6   8   8   8  
 LCS      72       P     4   10   15       C        1   1   2   3   3   3   4   5   5   5   5   6   6   6   6   6   6   8   8   8  
 LCS      73       V     4   10   15       C        1   1   2   3   3   3   4   5   5   5   5   6   6   6   6   6   6   8   8   8  
 LCS      74       D     4   10   15       C        1   1   2   3   3   3   4   5   5   5   5   6   6   6   6   6   6   8   8   8  
 LCS      75       P     3    5   15       C        1   1   1   1   2   3   4   5   5   5   5   5   5   6   6   6   6   8   8  10  
 LCS      76       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      77       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      78       D     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS      79       G     3    7   23       C        1   1   1   2   3   4   5   5   8   8   8  11  12  13  15  17  18  19  20  20  
 LCS      80       G     3   11   23       C        1   1   1   1   2   4   6   6   8  10  10  12  13  14  15  17  18  19  20  20  
 LCS      81       A     3   12   23       C        1   2   3   4   4   5   6   6   8  10  10  12  13  14  15  17  18  19  20  20  
 LCS      82       Q     6   12   23       E        1   2   3   4   4   5   6   6   8  10  10  12  13  14  15  17  18  19  20  20  
 LCS      83       V     7   12   23       E        1   2   3   4   4   5   6   6   8  10  12  13  14  15  15  17  18  19  20  20  
 LCS      84       Q     9   12   23       E        2   2   3   4   4   5   6   8   9  11  13  14  14  15  15  17  18  19  20  20  
 LCS      85       Q     9   12   23       E        2   2   3   4   4   6   7   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      86       V     9   12   23       E        2   2   3   4   4   6   7   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      87       I     9   12   23       E        2   2   3   4   4   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      88       N     9   12   23       E        2   2   3   4   4   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      89       I     9   12   23       E        1   2   3   4   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      90       E     9   12   23       E        2   2   3   4   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      91       C     9   12   23       E        1   2   3   4   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      92       I     9   12   23       C        1   2   3   4   4   5   6   6   8  11  14  14  14  15  15  17  18  19  20  20  
 LCS      93       S     4   11   23       C        1   2   3   3   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      94       D     4   10   23       C        1   2   3   3   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      95       F     4    7   23       C        1   1   3   3   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      96       T     3    7   23       C        1   1   1   3   4   6   8   9  11  12  14  14  14  15  15  16  17  18  20  20  
 LCS      97       E     3    7   23       C        1   2   3   3   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      98       A     4    7   23       C        1   2   3   3   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS      99       P     4    7   23       C        1   1   2   3   5   6   8   9  11  12  14  14  14  15  15  17  18  19  20  20  
 LCS     100       V     4    4   23       E        1   1   2   2   2   2   3   8  10  12  14  14  14  15  15  17  18  19  20  20  
 LCS     101       L     4    4   23       E        1   1   1   1   1   1   2   3   4   4   7   8  10  10  11  12  12  13  16  17  
 LCS     102       N     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     103       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     104       Q     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     105       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     106       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     107       Y     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     108       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     109       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     110       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     111       F     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     112       Q     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     113       N     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     114       V     5   10   11       E        1   1   2   3   4   4   4   4   5   5   5   5   5   6   6   6   7   8   8   8  
 LCS     115       S     5   10   11       E        1   1   2   3   4   4   4   4   5   5   5   5   5   7   7   7   7   8  10  11  
 LCS     116       V     5   10   11       E        1   2   2   3   4   4   4   4   5   5   5   5   5   6   6   7   7   8  12  13  
 LCS     117       K     5   10   11       E        1   2   2   3   4   4   4   4   5   5   5   5   5   6   6   6   7   8  11  13  
 LCS     118       L     5   10   11       C        1   2   2   3   4   4   4   4   5   5   5   5   5   6   8   8  13  13  16  16  
 LCS     119       P     5   10   11       C        1   2   2   2   4   4   4   4   5   5   5   5   5   6   6   6   7   8   8  10  
 LCS     120       I     5   10   11       C        1   2   2   3   4   4   4   4   5   5   5   5   5   6   6   6   7   8   8   8  
 LCS     121       T     4   10   11       C        1   1   2   3   4   4   4   4   5   5   5   5   5   6   6   6   7   8   8   8  
 LCS     122       L     4   10   11       H        1   1   2   3   4   4   4   4   5   5   5   5   5   6   6   6   7   8   8   8  
 LCS     123       N     4   10   11       H        1   1   1   3   3   4   4   4   5   5   5   5   5   6   6   6   7   8   8   8  
 LCS     124       K     3    3   11       H        0   1   1   1   1   1   1   1   2   2   2   4   4   4   6   6   6   6   8   8  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.85 
 
 NUMBER_OF_CA_Tg:  237      NUMBER_OF_CA_Pr:   93      PERCENT_OF_CA:  39.24  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       7       9      11      14      16      19      23      27      30      34      35      35      36      37      41      44      46      48      48  
 GDT PERCENT_OF_CA_Pr    5.38    7.53    9.68   11.83   15.05   17.20   20.43   24.73   29.03   32.26   36.56   37.63   37.63   38.71   39.78   44.09   47.31   49.46   51.61   51.61 
 GDT PERCENT_OF_CA_Tg    2.11    2.95    3.80    4.64    5.91    6.75    8.02    9.70   11.39   12.66   14.35   14.77   14.77   15.19   15.61   17.30   18.57   19.41   20.25   20.25 
 GDT FRAGMENT: Beg-End  84-88   84-90   84-92   81-91   21-94   26-99   25-99   21-99   21-99   21-99   21-100  21-100  21-100  21-100   8-99    8-100   8-100   8-100   8-100   8-100 
 GDT RMS_LOCAL           0.28    0.59    0.88    1.40    1.86    2.18    2.43    3.00    3.26    3.54    3.84    3.96    3.96    4.14    5.29    5.71    5.95    6.12    6.29    6.29 
 GDT RMS_ALL_CA         16.02   15.93   15.27   18.19   17.21   17.84   17.53   16.76   16.74   16.89   16.97   16.86   16.86   16.74   15.47   15.45   15.58   15.73   15.72   15.72 
 
 
 TEST (CA)  RMS =  14.71               (Number of atoms:   93) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   14.71         93    39.2   237     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1582                            CRMSCA  
     SECONDARY STRUCTURE . .   13.35         57    40.1   142     CRMSCA  
     SURFACE . . . . . . . .   13.97         46    34.3   134     CRMSCA  
     BURIED  . . . . . . . .   15.40         47    45.6   103     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   14.76        372    31.7  1172     CRMSMC  
     SECONDARY STRUCTURE . .   13.37        228    32.5   702     CRMSMC  
     SURFACE . . . . . . . .   13.78        184    27.8   662     CRMSMC  
     BURIED  . . . . . . . .   15.67        188    36.9   510     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   926     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   762     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   598     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   507     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   419     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   14.76        372    19.9  1874     CRMSALL 
     SECONDARY STRUCTURE . .   13.37        228    19.6  1166     CRMSALL 
     SURFACE . . . . . . . .   13.78        184    17.6  1043     CRMSALL 
     BURIED  . . . . . . . .   15.67        188    22.6   831     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.906      1.000       0.500     93    39.2   237     ERRCA  
     SECONDARY STRUCTURE . .   12.144      1.000       0.500     57    40.1   142     ERRCA  
     SURFACE . . . . . . . .   12.498      1.000       0.500     46    34.3   134     ERRCA  
     BURIED  . . . . . . . .   13.306      1.000       0.500     47    45.6   103     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.949      1.000       0.500    372    31.7  1172     ERRMC  
     SECONDARY STRUCTURE . .   12.160      1.000       0.500    228    32.5   702     ERRMC  
     SURFACE . . . . . . . .   12.313      1.000       0.500    184    27.8   662     ERRMC  
     BURIED  . . . . . . . .   13.572      1.000       0.500    188    36.9   510     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   926     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   762     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   598     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   507     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   419     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.949      1.000       0.500    372    19.9  1874     ERRALL 
     SECONDARY STRUCTURE . .   12.160      1.000       0.500    228    19.6  1166     ERRALL 
     SURFACE . . . . . . . .   12.313      1.000       0.500    184    17.6  1043     ERRALL 
     BURIED  . . . . . . . .   13.572      1.000       0.500    188    22.6   831     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         3        11        35      93     237   DISTCA 
CA  (P)      0.00      0.42      1.27      4.64     14.77             237   DISTCA 
CA  (RMS)    0.00      1.90      2.41      4.09      6.79                   DISTCA 
 
ALL (N)         0         4        10        39       144     372    1874   DISTALL 
ALL (P)      0.00      0.21      0.53      2.08      7.68            1874   DISTALL 
ALL (RMS)    0.00      1.83      2.30      3.86      6.91                   DISTALL 
 
 
 
 
END of the results output 
