 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 139 , MODEL 139 , TARGET 237 
#          The number of residues possible to evaluate: 139 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP    94     D     C     C             1.00 
 SSP    95     F     C     C             1.00 
 SSP    96     T     C     C             1.00 
 SSP    97     E     C     C             1.00 
 SSP    98     A     C     C             1.00 
 SSP    99     P     C     C             1.00 
 SSP   100     V     E     C             1.00 
 SSP   101     L     E     C             1.00 
 SSP   102     N     E     C             1.00 
 SSP   103     I     E     C             1.00 
 SSP   104     Q     E     E             1.00 
 SSP   105     F     E     E             1.00 
 SSP   106     R     E     E             1.00 
 SSP   107     Y     E     C             1.00 
 SSP   108     G     C     C             1.00 
 SSP   109     G     C     C             1.00 
 SSP   110     T     E     C             1.00 
 SSP   111     F     E     C             1.00 
 SSP   112     Q     E     C             1.00 
 SSP   113     N     E     E             1.00 
 SSP   114     V     E     E             1.00 
 SSP   115     S     E     C             1.00 
 SSP   116     V     E     C             1.00 
 SSP   117     K     E     C             1.00 
 SSP   118     L     C     C             1.00 
 SSP   119     P     C     E             1.00 
 SSP   120     I     C     E             1.00 
 SSP   121     T     C     C             1.00 
 SSP   122     L     H     C             1.00 
 SSP   123     N     H     E             1.00 
 SSP   124     K     H     E             1.00 
 SSP   125     F     H     C             1.00 
 SSP   126     F     E     C             1.00 
 SSP   127     Q     E     C             1.00 
 SSP   128     P     E     C             1.00 
 SSP   129     T     C     C             1.00 
 SSP   130     E     C     C             1.00 
 SSP   131     M     C     H             1.00 
 SSP   132     A     C     H             1.00 
 SSP   133     S     H     H             1.00 
 SSP   134     Q     H     H             1.00 
 SSP   135     D     H     H             1.00 
 SSP   136     F     H     H             1.00 
 SSP   137     F     H     H             1.00 
 SSP   138     Q     H     H             1.00 
 SSP   139     R     H     H             1.00 
 SSP   140     W     H     H             1.00 
 SSP   141     K     C     H             1.00 
 SSP   142     Q     C     H             1.00 
 SSP   143     L     C     H             1.00 
 SSP   144     S     C     H             1.00 
 SSP   145     N     C     H             1.00 
 SSP   146     P     H     H             1.00 
 SSP   147     Q     H     H             1.00 
 SSP   148     Q     H     H             1.00 
 SSP   149     E     E     H             1.00 
 SSP   150     V     E     C             1.00 
 SSP   151     Q     E     C             1.00 
 SSP   152     N     E     C             1.00 
 SSP   153     I     E     C             1.00 
 SSP   154     F     E     H             1.00 
 SSP   155     K     E     H             1.00 
 SSP   156     A     C     H             1.00 
 SSP   157     K     C     H             1.00 
 SSP   158     H     C     H             1.00 
 SSP   159     P     C     H             1.00 
 SSP  BREAK 
 SSP   161     D     C     H             1.00 
 SSP   162     T     H     H             1.00 
 SSP   163     E     H     H             1.00 
 SSP   164     I     H     H             1.00 
 SSP   165     T     H     H             1.00 
 SSP   166     K     H     H             1.00 
 SSP   167     A     H     H             1.00 
 SSP   168     K     H     H             1.00 
 SSP   169     I     H     H             1.00 
 SSP   170     I     H     C             1.00 
 SSP   171     G     H     C             1.00 
 SSP   172     F     H     C             1.00 
 SSP   173     G     C     C             1.00 
 SSP   174     S     C     E             1.00 
 SSP   175     A     E     E             1.00 
 SSP   176     L     E     E             1.00 
 SSP   177     L     E     C             1.00 
 SSP   178     E     C     C             1.00 
 SSP   179     E     C     E             1.00 
 SSP   180     V     C     E             1.00 
 SSP   181     D     C     C             1.00 
 SSP   182     P     C     C             1.00 
 SSP   183     N     C     C             1.00 
 SSP   184     P     C     C             1.00 
 SSP   185     A     C     C             1.00 
 SSP   186     N     C     C             1.00 
 SSP   187     F     E     E             1.00 
 SSP   188     V     E     E             1.00 
 SSP   189     G     E     E             1.00 
 SSP   190     A     E     C             1.00 
 SSP   191     G     E     C             1.00 
 SSP   192     I     E     E             1.00 
 SSP   193     I     E     E             1.00 
 SSP   194     H     E     E             1.00 
 SSP   195     T     C     E             1.00 
 SSP   196     K     C     C             1.00 
 SSP   197     T     C     C             1.00 
 SSP  BREAK 
 SSP   201     G     E     E             1.00 
 SSP   202     C     E     E             1.00 
 SSP   203     L     E     E             1.00 
 SSP   204     L     E     E             1.00 
 SSP   205     R     E     E             1.00 
 SSP   206     L     E     C             1.00 
 SSP   207     E     E     C             1.00 
 SSP   208     P     E     C             1.00 
 SSP   209     N     E     C             1.00 
 SSP   210     L     C     C             1.00 
 SSP   211     Q     C     C             1.00 
 SSP   212     A     C     H             1.00 
 SSP   213     Q     C     H             1.00 
 SSP   214     M     E     H             1.00 
 SSP   215     Y     E     H             1.00 
 SSP   216     R     E     H             1.00 
 SSP   217     L     E     H             1.00 
 SSP   218     T     E     H             1.00 
 SSP   219     L     E     H             1.00 
 SSP   220     R     E     H             1.00 
 SSP  BREAK 
 SSP   222     S     C     H             1.00 
 SSP   223     K     C     H             1.00 
 SSP   224     D     H     H             1.00 
 SSP   225     T     H     H             1.00 
 SSP   226     V     H     H             1.00 
 SSP   227     S     H     H             1.00 
 SSP   228     Q     H     H             1.00 
 SSP   229     R     H     H             1.00 
 SSP   230     L     H     H             1.00 
 SSP   231     C     H     H             1.00 
 SSP   232     E     H     H             1.00 
 SSP   233     L     H     H             1.00 
 SSP   234     L     H     H             1.00 
 SSP   235     S     H     C             1.00 
 SSP   236     E     C     C             1.00 
 SSP   237     Q     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              53.2      78.9     34.0     54.2     58.6 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        52.0      75.5     40.5     48.8     58.6 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG           13              69.2              23.1 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            1                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     139    100.0     53.2 
 
 BIN  0.00 - 1.00      1.00     139    100.0     53.2 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 224 
 
# WARNING! TARGET 1874 atoms, MODEL 1341 atoms, 1323 common with TARGET 
           Number of atoms possible to evaluate: 556 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    73.08           57.0   270    57.2   472     ARMSMC  
     SECONDARY STRUCTURE . .    63.39           63.3   166    58.5   284     ARMSMC  
     SURFACE . . . . . . . .    72.21           59.5   148    55.4   267     ARMSMC  
     BURIED  . . . . . . . .    74.13           54.1   122    59.5   205     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   211     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   198     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   131     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   116     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    95     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   161     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   116     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   103     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    91     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    35     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    35     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    48     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     9     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    20     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    13     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    17     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   94 - 159  66   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    24     99 - 122      4.72    35.58 
  LCS LOCAL_SCORE:             31.59 
 
 FRAGMENT  2  161 - 197  37   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    19    161 - 179      4.67    12.92 
  LONGEST_CONTINUOUS_SEGMENT    19    162 - 180      5.00    12.19 
  LCS LOCAL_SCORE:             46.53 
 
 FRAGMENT  3  201 - 220  20   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    201 - 216      4.27     8.03 
  LCS LOCAL_SCORE:             75.25 
 
 FRAGMENT  4  222 - 237  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    222 - 237      1.64     1.64 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   94 - 159  66   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    131 - 143      1.81    37.15 
  LONGEST_CONTINUOUS_SEGMENT    13    132 - 144      1.79    38.44 
  LCS LOCAL_SCORE:             11.57 
 
 FRAGMENT  2  161 - 197  37   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    161 - 171      0.31    23.60 
  LCS LOCAL_SCORE:             22.86 
 
 FRAGMENT  3  201 - 220  20   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    203 - 212      1.98     9.71 
  LCS LOCAL_SCORE:             35.25 
 
 FRAGMENT  4  222 - 237  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16    222 - 237      1.64     1.64 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   94 - 159  66   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    12    132 - 143      0.79    38.19 
  LCS LOCAL_SCORE:              8.56 
 
 FRAGMENT  2  161 - 197  37   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    161 - 171      0.31    23.60 
  LCS LOCAL_SCORE:             18.77 
 
 FRAGMENT  3  201 - 220  20   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    203 - 209      0.79    13.06 
  LONGEST_CONTINUOUS_SEGMENT     7    204 - 210      0.91    13.10 
  LCS LOCAL_SCORE:             24.25 
 
 FRAGMENT  4  222 - 237  16   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    223 - 237      0.89     1.85 
  LCS LOCAL_SCORE:             89.06 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      94       D     4    5   14       C        1   1   1   1   2   3   3   4   5   5   6   7   8  10  10  11  12  13  16  17  
 LCS      95       F     4    5   14       C        1   1   1   2   3   3   4   4   5   5   7   8  10  10  10  11  13  14  16  17  
 LCS      96       T     4    5   14       C        1   1   1   1   3   3   4   4   5   5   7   8  10  10  10  11  13  14  16  17  
 LCS      97       E     4    5   18       C        1   1   1   1   1   2   2   3   3   4   5   7   8   9  10  11  13  14  16  17  
 LCS      98       A     3    5   22       C        0   1   1   1   1   2   2   3   4   5   5   7   8   8  10  10  11  13  15  17  
 LCS      99       P     4    8   24       C        1   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  12  13  17  
 LCS     100       V     4    8   24       E        1   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     101       L     6    8   24       E        1   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     102       N     6    8   24       E        1   2   2   2   3   4   5   5   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     103       I     6    8   24       E        1   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     104       Q     6    8   24       E        1   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     105       F     6    8   24       E        1   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     106       R     6    8   24       E        1   2   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     107       Y     4    8   24       E        1   1   2   2   3   4   5   5   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     108       G     4    6   24       C        1   1   1   2   2   2   3   4   5   5   6   7   8   9   9  10  10  10  10  11  
 LCS     109       G     4    8   24       C        1   1   1   2   2   3   5   5   5   6   7   8   8   9   9  10  10  10  11  12  
 LCS     110       T     5    8   24       E        1   1   2   2   3   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     111       F     5    8   24       E        1   1   2   2   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     112       Q     5    8   24       E        1   1   2   2   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     113       N     5    8   24       E        1   1   2   2   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     114       V     5    8   24       E        1   1   2   3   4   4   5   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     115       S     4    8   24       E        1   1   2   2   2   3   5   5   5   8   8   8   9   9  10  10  11  11  11  12  
 LCS     116       V     4    8   24       E        1   1   2   2   3   4   5   5   5   8   8   8   9   9  10  10  11  11  11  12  
 LCS     117       K     3    6   24       E        1   1   1   1   2   3   4   5   5   6   7   8   9   9  10  10  11  11  11  12  
 LCS     118       L     3    6   24       C        1   1   2   2   2   3   4   6   6   8   8   8   9   9  10  10  11  11  11  12  
 LCS     119       P     3    6   24       C        1   1   2   2   2   3   5   6   6   8   8   8   9   9  10  10  11  11  13  13  
 LCS     120       I     3    6   24       C        1   1   2   2   2   3   4   5   6   7   8   8   9   9  10  11  13  14  16  17  
 LCS     121       T     3    6   24       C        1   1   2   2   2   4   5   6   6   8   8   8   9   9  10  11  13  14  16  17  
 LCS     122       L     3    6   24       H        1   1   1   2   2   2   3   4   5   7   8   8   9   9  10  11  13  14  15  17  
 LCS     123       N     3    5   23       H        1   1   1   2   2   2   3   4   4   5   6   7   8   9  10  10  11  11  13  13  
 LCS     124       K     3    5   20       H        1   1   1   2   2   2   2   3   4   5   6   7   8   8  10  10  10  11  15  17  
 LCS     125       F     3    4   20       H        1   1   1   1   1   2   2   3   3   4   5   5   8   8   9  11  12  13  16  17  
 LCS     126       F     3    4   20       E        1   1   1   1   2   2   2   3   4   5   6   7   8   8   9  10  10  11  13  16  
 LCS     127       Q     3    4   20       E        1   1   1   1   2   2   2   4   4   5   6   7   8   8   9  10  10  11  13  13  
 LCS     128       P     3    5   20       E        1   1   1   1   2   2   3   4   4   5   6   7   8   8   9  10  10  11  13  13  
 LCS     129       T     4    5   21       C        1   1   1   1   2   2   3   4   4   5   6   7   8   8   9  10  10  11  13  13  
 LCS     130       E     4    5   21       C        1   1   1   1   2   3   3   5   5   6   7   7   8   8   9  10  10  11  13  13  
 LCS     131       M     4   13   21       C        1   1   1   2   2   3   5   5   5   6   7   7   8   8   9  10  10  11  13  13  
 LCS     132       A    12   13   21       C        2   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  10  11  13  13  
 LCS     133       S    12   13   21       H        2   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  10  11  12  12  
 LCS     134       Q    12   13   21       H        2   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  10  11  12  12  
 LCS     135       D    12   13   21       H        2   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  10  11  12  13  
 LCS     136       F    12   13   21       H        2   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  10  11  13  13  
 LCS     137       F    12   13   21       H        2   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  10  11  13  13  
 LCS     138       Q    12   13   21       H        2   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  10  11  12  12  
 LCS     139       R    12   13   21       H        2   4   5   5   5   5   5   5   6   6   7   7   8  10  10  11  12  13  16  17  
 LCS     140       W    12   13   21       H        2   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  11  13  16  17  
 LCS     141       K    12   13   21       C        1   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  10  12  13  15  
 LCS     142       Q    12   13   21       C        1   4   5   5   5   5   5   5   6   6   7   7   8   8   9  10  11  13  16  17  
 LCS     143       L    12   13   21       C        1   3   5   5   5   5   5   5   6   6   7   7   8  10  10  11  12  13  16  17  
 LCS     144       S     4   13   21       C        1   1   1   1   2   2   3   4   5   6   7   7   8  10  10  11  12  13  16  17  
 LCS     145       N     5    6   21       C        1   2   2   2   2   2   4   5   6   6   7   7   7   9  10  11  12  13  16  17  
 LCS     146       P     5    6   21       H        1   2   2   2   2   3   5   5   6   6   7   7   8  10  10  11  12  13  16  17  
 LCS     147       Q     5    6   21       H        1   2   2   2   2   2   5   5   6   6   7   7   8  10  10  11  12  13  16  17  
 LCS     148       Q     5    6   21       H        1   2   2   2   2   2   4   5   6   6   7   7   8   8   9  10  11  13  16  17  
 LCS     149       E     5    6   21       E        1   2   2   2   2   2   2   4   5   6   6   7   8   8   9  10  11  13  16  17  
 LCS     150       V     5    6   21       E        1   1   1   2   2   2   2   3   4   5   6   7   8   8   9  10  11  12  13  15  
 LCS     151       Q     5    6   19       E        1   1   1   2   2   2   2   3   4   5   6   7   8  10  10  11  12  13  16  17  
 LCS     152       N     5    6   19       E        1   1   1   2   2   3   3   4   5   5   6   7   8  10  10  11  13  14  16  17  
 LCS     153       I     5    6   17       E        1   1   2   2   3   3   4   4   5   5   6   7  10  10  10  11  13  14  16  17  
 LCS     154       F     5    6   13       E        1   1   1   2   3   3   4   4   5   5   7   8  10  10  10  11  13  14  16  17  
 LCS     155       K     3    6   13       E        1   1   1   1   2   2   2   2   3   4   7   8  10  10  10  11  13  14  15  17  
 LCS     156       A     4    4   13       C        1   1   1   1   1   2   2   2   4   5   7   8  10  10  10  11  13  14  15  17  
 LCS     157       K     4    4   13       C        1   1   1   1   1   2   2   2   4   5   7   8  10  10  10  11  13  14  15  17  
 LCS     158       H     4    4   13       C        1   1   1   1   1   2   2   2   3   5   7   8  10  10  10  11  13  14  15  17  
 LCS     159       P     4    4   13       C        0   1   1   1   1   2   2   2   3   3   4   5   7   7   8   9  10  12  15  17  
 LCS     160       M     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     161       D    11   11   19       C        4   4   4   4   4   4   4   4   5   5   5   7  10  10  10  11  13  14  15  17  
 LCS     162       T    11   11   19       H        4   4   4   4   4   4   4   4   5   5   5   7  10  10  10  11  13  14  16  17  
 LCS     163       E    11   11   19       H        4   4   4   4   4   4   4   4   5   5   5   6   6   8  10  11  13  14  16  17  
 LCS     164       I    11   11   19       H        4   4   4   4   4   4   4   4   5   5   7   8  10  10  10  11  13  14  16  17  
 LCS     165       T    11   11   19       H        4   4   4   4   4   4   4   4   5   5   7   8  10  10  10  11  13  14  16  17  
 LCS     166       K    11   11   19       H        4   4   4   4   4   4   4   4   5   5   6   7  10  10  10  11  13  14  16  17  
 LCS     167       A    11   11   19       H        4   4   4   4   4   4   4   4   5   5   7   8  10  10  10  11  13  14  16  17  
 LCS     168       K    11   11   19       H        4   4   4   4   4   4   4   4   5   5   5   6   7  10  10  11  12  14  16  17  
 LCS     169       I    11   11   19       H        4   4   4   4   4   4   4   4   5   5   5   5   6   7   8   9  10  10  11  12  
 LCS     170       I    11   11   19       H        4   4   4   4   4   4   4   4   5   5   5   6   7   7   8   9  11  12  13  15  
 LCS     171       G    11   11   19       H        4   4   4   4   4   4   4   4   5   5   5   6   7   7   8   9  10  10  13  15  
 LCS     172       F     5    8   19       H        1   1   2   3   3   4   4   4   6   7   7   7   8   8   9   9  10  10  11  14  
 LCS     173       G     5    8   19       C        1   1   2   3   3   4   4   4   6   7   7   7   8   8   9   9  10  10  13  15  
 LCS     174       S     5    8   19       C        1   1   2   3   3   4   4   4   5   7   7   7   8   9  10  11  13  14  15  17  
 LCS     175       A     5    8   19       E        1   1   2   3   3   4   4   4   5   6   7   8  10  10  10  11  13  14  16  17  
 LCS     176       L     5    8   19       E        1   1   2   3   3   4   4   4   5   7   7   8  10  10  10  11  13  14  16  17  
 LCS     177       L     3    8   19       E        0   1   2   3   3   4   4   4   5   6   6   8  10  10  10  12  13  14  16  17  
 LCS     178       E     3    8   19       C        1   2   3   4   4   4   4   5   5   7   7   8  10  10  10  12  13  14  16  17  
 LCS     179       E     3    7   19       C        1   1   2   2   3   4   4   5   5   7   7   8  10  10  10  12  13  14  16  17  
 LCS     180       V     5    7   19       C        1   1   3   4   4   4   4   4   5   7   7   8  10  10  10  12  13  14  16  17  
 LCS     181       D     5    7   17       C        1   1   2   4   4   4   5   5   6   7   7   8   9  10  10  12  13  14  15  17  
 LCS     182       P     5    7   17       C        1   1   2   2   3   4   5   5   6   6   7   8   9  10  10  12  12  12  14  17  
 LCS     183       N     5    7   17       C        1   1   2   2   2   4   5   5   6   6   6   7   8   9  10  12  12  12  13  13  
 LCS     184       P     5    7   17       C        1   1   2   2   2   4   5   5   6   6   6   7   8   8   9   9  10  11  12  15  
 LCS     185       A     5    6   17       C        1   1   2   2   3   3   4   4   5   5   6   6   7   7   8   9  10  11  12  14  
 LCS     186       N     5    6   17       C        1   1   2   2   3   3   4   4   5   5   6   6   8   9  10  12  12  12  14  17  
 LCS     187       F     5    6   17       E        1   1   2   2   3   3   4   5   5   6   7   8   9  10  10  12  13  14  15  17  
 LCS     188       V     5    6   17       E        1   1   2   2   3   3   4   5   5   6   7   8  10  10  10  12  13  14  16  17  
 LCS     189       G     4    6   17       E        1   1   2   2   3   3   4   4   5   6   7   8  10  10  10  12  13  14  16  17  
 LCS     190       A     4    8   17       E        1   1   1   2   3   3   3   3   5   5   7   8  10  10  10  12  13  14  16  17  
 LCS     191       G     7    8   17       E        1   2   2   2   3   3   3   3   3   4   5   8  10  10  10  11  13  14  16  17  
 LCS     192       I     7    8   15       E        2   2   2   2   3   3   3   3   3   3   4   4   5   5   7   8   8   9  12  12  
 LCS     193       I     7    8   11       E        2   2   2   2   3   3   3   3   3   3   4   4   4   5   6   8   9  10  12  12  
 LCS     194       H     7    8   11       E        2   2   2   2   3   3   3   3   3   3   4   4   4   5   5   8   9  10  12  12  
 LCS     195       T     7    8   11       C        2   2   2   2   3   3   3   3   3   3   4   4   4   5   5   8   9  10  12  12  
 LCS     196       K     7    8   11       C        2   2   2   2   3   3   3   3   3   3   3   4   4   5   5   8   9  10  12  12  
 LCS     197       T     7    8   11       C        1   2   2   2   3   3   3   3   3   3   3   4   4   5   5   7   8   8  12  12  
 LCS     198       T     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     199       Q     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     200       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     201       G     4    5   16       E        0   1   1   1   2   2   3   5   6   6   6   6   7   8   8   8  10  10  12  12  
 LCS     202       C     4    9   16       E        0   1   1   1   2   3   4   5   6   6   6   6   7   8   9   9  10  10  12  12  
 LCS     203       L     7   10   16       E        1   2   3   4   4   4   4   5   6   7   7   7   8   8   9   9  10  10  12  13  
 LCS     204       L     7   10   16       E        1   2   3   4   4   4   5   5   6   7   7   7   8   8   9   9  10  10  12  13  
 LCS     205       R     7   10   16       E        1   2   3   4   4   4   5   5   6   7   7   7   8   8   9   9  10  11  12  13  
 LCS     206       L     7   10   16       E        1   2   3   4   4   4   5   5   6   7   7   7   8   8   9   9  10  11  12  13  
 LCS     207       E     7   10   16       E        1   2   3   4   4   4   5   5   6   7   7   7   8   8   9   9  10  11  12  13  
 LCS     208       P     7   10   16       E        1   2   3   4   4   4   5   5   6   7   7   7   8   8   9   9  10  11  12  13  
 LCS     209       N     7   10   16       E        1   2   3   4   4   4   5   5   6   7   7   7   8   8   9   9  10  10  12  13  
 LCS     210       L     7   10   16       C        1   2   3   3   3   4   5   5   6   7   7   7   8   8   9   9  10  10  12  12  
 LCS     211       Q     6   10   16       C        1   2   2   3   3   3   5   5   6   7   7   7   8   8   9   9  10  10  10  11  
 LCS     212       A     3   10   16       C        1   1   1   1   3   3   4   5   6   6   6   6   6   7   8   9  10  11  12  13  
 LCS     213       Q     3    4   16       C        1   1   1   1   1   1   2   3   6   6   6   6   6   7   8   9  10  11  12  13  
 LCS     214       M     3    4   16       E        1   1   1   1   1   3   4   5   6   6   6   6   6   6   8   9  10  11  12  13  
 LCS     215       Y     3    4   16       E        1   1   1   1   1   1   2   4   6   6   6   6   6   7   8   9  10  11  12  13  
 LCS     216       R     3    3   16       E        1   1   1   1   1   1   2   2   4   5   6   6   6   7   7   8   9  11  12  13  
 LCS     217       L     3    3   12       E        1   1   1   1   1   1   4   4   4   4   6   6   6   7   7   8   9   9  10  10  
 LCS     218       T     3    3   12       E        0   1   2   2   3   3   4   4   4   4   6   6   6   6   7   8   9  12  12  17  
 LCS     219       L     3    3   12       E        0   1   1   1   1   1   2   2   3   3   4   4   5   5  10  12  12  12  13  13  
 LCS     220       R     3    3    9       E        0   1   1   1   1   1   2   2   5   6   7   8   9  10  10  12  12  12  13  14  
 LCS     221       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     222       S     3   16   16       C        0   1   1   2   5   5   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     223       K    15   16   16       C        4   5   6   6   6   6   6   6   6   6   6   6   6   8   8  10  10  11  13  13  
 LCS     224       D    15   16   16       H        4   5   6   6   6   6   6   6   6   6   6   7   9  10  10  12  12  12  13  13  
 LCS     225       T    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   7   9  10  10  12  12  12  13  13  
 LCS     226       V    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   7   9  10  10  12  12  12  13  13  
 LCS     227       S    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     228       Q    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     229       R    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     230       L    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     231       C    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     232       E    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     233       L    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     234       L    15   16   16       H        4   5   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     235       S    15   16   16       H        2   3   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     236       E    15   16   16       C        2   4   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS     237       Q    15   16   16       C        2   3   6   6   6   6   6   6   6   6   7   8   9  10  10  12  12  12  13  13  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   1.70 
 
 NUMBER_OF_CA_Tg:  237      NUMBER_OF_CA_Pr:  139      PERCENT_OF_CA:  58.65  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      11      12      15      15      15      15      15      16      16      19      20      21      24      25      26      29      31      34      38      41  
 GDT PERCENT_OF_CA_Pr    7.91    8.63   10.79   10.79   10.79   10.79   10.79   11.51   11.51   13.67   14.39   15.11   17.27   17.99   18.71   20.86   22.30   24.46   27.34   29.50 
 GDT PERCENT_OF_CA_Tg    4.64    5.06    6.33    6.33    6.33    6.33    6.33    6.75    6.75    8.02    8.44    8.86   10.13   10.55   10.97   12.24   13.08   14.35   16.03   17.30 
 GDT FRAGMENT: Beg-End 223-233 223-234 223-237 223-237 223-237 223-237 223-237 222-237 222-237  99-121  99-121  99-122  95-191 177-237  95-122 177-237  95-191  95-191  94-191  95-218 
 GDT RMS_LOCAL           0.31    0.36    0.89    0.89    0.89    0.89    0.89    1.64    1.64    3.64    3.82    3.98    5.09    5.06    5.06    5.61    5.91    6.25    7.15    7.20 
 GDT RMS_ALL_CA         31.26   31.13   30.59   30.59   30.59   30.59   30.59   30.38   30.38   41.54   41.47   41.31   24.59   29.14   40.38   28.89   24.37   24.10   25.14   23.77 
 
 
 TEST (CA)  RMS =  22.22               (Number of atoms:  139) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   22.22        139    58.6   237     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1598                            CRMSCA  
     SECONDARY STRUCTURE . .   22.79         84    59.2   142     CRMSCA  
     SURFACE . . . . . . . .   24.92         77    57.5   134     CRMSCA  
     BURIED  . . . . . . . .   18.31         62    60.2   103     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   22.17        556    47.4  1172     CRMSMC  
     SECONDARY STRUCTURE . .   22.70        336    47.9   702     CRMSMC  
     SURFACE . . . . . . . .   24.72        308    46.5   662     CRMSMC  
     BURIED  . . . . . . . .   18.51        248    48.6   510     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   926     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   762     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   598     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   507     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   419     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   22.17        556    29.7  1874     CRMSALL 
     SECONDARY STRUCTURE . .   22.70        336    28.8  1166     CRMSALL 
     SURFACE . . . . . . . .   24.72        308    29.5  1043     CRMSALL 
     BURIED  . . . . . . . .   18.51        248    29.8   831     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   20.091      1.000       0.500    139    58.6   237     ERRCA  
     SECONDARY STRUCTURE . .   20.821      1.000       0.500     84    59.2   142     ERRCA  
     SURFACE . . . . . . . .   22.627      1.000       0.500     77    57.5   134     ERRCA  
     BURIED  . . . . . . . .   16.941      1.000       0.500     62    60.2   103     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   20.041      1.000       0.500    556    47.4  1172     ERRMC  
     SECONDARY STRUCTURE . .   20.761      1.000       0.500    336    47.9   702     ERRMC  
     SURFACE . . . . . . . .   22.412      1.000       0.500    308    46.5   662     ERRMC  
     BURIED  . . . . . . . .   17.096      1.000       0.500    248    48.6   510     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   926     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   762     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   598     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   507     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   419     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   20.041      1.000       0.500    556    29.7  1874     ERRALL 
     SECONDARY STRUCTURE . .   20.761      1.000       0.500    336    28.8  1166     ERRALL 
     SURFACE . . . . . . . .   22.412      1.000       0.500    308    29.5  1043     ERRALL 
     BURIED  . . . . . . . .   17.096      1.000       0.500    248    29.8   831     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         1         2        14     139     237   DISTCA 
CA  (P)      0.00      0.00      0.42      0.84      5.91             237   DISTCA 
CA  (RMS)    0.00      0.00      2.14      2.64      7.19                   DISTCA 
 
ALL (N)         0         1         4        12        59     556    1874   DISTALL 
ALL (P)      0.00      0.05      0.21      0.64      3.15            1874   DISTALL 
ALL (RMS)    0.00      1.74      2.24      3.65      7.19                   DISTALL 
 
 
 
 
END of the results output 
