 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 104 , MODEL 104 , TARGET 376 
#          The number of residues possible to evaluate: 104 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   260     M     C     C             1.00 
 SSP   261     G     C     E             1.00 
 SSP   262     V     E     E             1.00 
 SSP   263     Y     E     E             1.00 
 SSP   264     N     E     E             1.00 
 SSP   265     V     E     E             1.00 
 SSP   266     T     E     C             1.00 
 SSP   267     V     E     C             1.00 
 SSP   268     D     E     C             1.00 
 SSP   269     D     E     C             1.00 
 SSP   270     L     E     C             1.00 
 SSP   271     K     E     C             1.00 
 SSP   272     M     E     C             1.00 
 SSP   273     N     E     C             1.00 
 SSP   274     G     C     C             1.00 
 SSP   275     T     C     C             1.00 
 SSP   276     T     C     C             1.00 
 SSP   277     N     E     C             1.00 
 SSP   278     G     E     E             1.00 
 SSP   279     L     E     E             1.00 
 SSP   280     R     E     E             1.00 
 SSP   281     I     E     E             1.00 
 SSP   282     K     E     E             1.00 
 SSP   283     S     C     E             1.00 
 SSP   284     D     C     C             1.00 
 SSP   285     K     C     C             1.00 
 SSP   286     S     C     C             1.00 
 SSP   287     A     C     C             1.00 
 SSP   288     A     C     C             1.00 
 SSP   289     G     C     C             1.00 
 SSP   290     V     E     C             1.00 
 SSP   291     V     E     C             1.00 
 SSP   292     N     E     C             1.00 
 SSP   293     G     E     C             1.00 
 SSP   294     V     E     C             1.00 
 SSP   295     R     E     C             1.00 
 SSP   296     Y     E     C             1.00 
 SSP   297     S     E     E             1.00 
 SSP   298     N     E     E             1.00 
 SSP   299     V     E     E             1.00 
 SSP   300     V     E     E             1.00 
 SSP   301     M     E     C             1.00 
 SSP   302     K     E     C             1.00 
 SSP   303     N     C     C             1.00 
 SSP   304     V     C     C             1.00 
 SSP   305     A     C     C             1.00 
 SSP   306     K     E     C             1.00 
 SSP   307     P     E     E             1.00 
 SSP   308     I     E     E             1.00 
 SSP   309     V     E     E             1.00 
 SSP   310     I     E     E             1.00 
 SSP   311     D     E     E             1.00 
 SSP   312     T     C     E             1.00 
 SSP   313     V     C     E             1.00 
 SSP   314     Y     C     E             1.00 
 SSP   315     E     C     E             1.00 
 SSP   316     K     C     C             1.00 
 SSP   317     K     C     C             1.00 
 SSP   318     E     C     C             1.00 
 SSP   319     G     C     C             1.00 
 SSP   320     S     C     C             1.00 
 SSP   321     N     C     C             1.00 
 SSP   322     V     C     C             1.00 
 SSP   323     P     C     C             1.00 
 SSP   324     D     E     C             1.00 
 SSP   325     W     E     C             1.00 
 SSP   326     S     E     C             1.00 
 SSP   327     D     E     C             1.00 
 SSP   328     I     E     E             1.00 
 SSP   329     T     E     E             1.00 
 SSP   330     F     E     E             1.00 
 SSP   331     K     E     C             1.00 
 SSP   332     D     E     H             1.00 
 SSP   333     V     E     H             1.00 
 SSP   334     T     E     H             1.00 
 SSP   335     S     E     H             1.00 
 SSP   336     E     C     C             1.00 
 SSP   337     T     C     C             1.00 
 SSP   338     K     C     C             1.00 
 SSP   339     G     C     E             1.00 
 SSP   340     V     E     E             1.00 
 SSP   341     V     E     E             1.00 
 SSP   342     V     E     E             1.00 
 SSP   343     L     E     C             1.00 
 SSP   344     N     E     C             1.00 
 SSP   345     G     C     C             1.00 
 SSP   346     E     C     C             1.00 
 SSP   347     N     C     C             1.00 
 SSP   348     A     C     C             1.00 
 SSP   349     K     C     C             1.00 
 SSP   350     K     C     C             1.00 
 SSP   351     P     C     C             1.00 
 SSP   352     I     E     C             1.00 
 SSP   353     E     E     C             1.00 
 SSP   354     V     E     C             1.00 
 SSP   355     T     E     C             1.00 
 SSP   356     M     E     C             1.00 
 SSP   357     K     E     C             1.00 
 SSP   358     N     E     C             1.00 
 SSP   359     V     E     C             1.00 
 SSP   360     K     E     C             1.00 
 SSP   361     L     C     E             1.00 
 SSP   362     T     C     E             1.00 
 SSP   363     S     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              53.8       0.0     38.1     78.0     27.7 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        56.1     100.0     48.4     68.0     27.7 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            7              77.6               8.2 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00     104    100.0     53.8 
 
 BIN  0.00 - 1.00      1.00     104    100.0     53.8 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED         105             105           105            376 
 ALL CONTACTS (< 8.0A)     426             490           426           2088 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       426        189   44.37   38.57    9.05       0     0.00         490      2088  |   1-9999 
 RES CONTACTS       219        171   78.08   81.43   21.73       0     0.00         210       787  |   1-4    
 RES CONTACTS        31          1    3.23   16.67    1.64       0     0.00           6        61  |   5-8    
 RES CONTACTS       176         17    9.66    6.20    1.37       0     0.00         274      1240  |   9-9999 
 
 
 
# WARNING! TARGET 2812 atoms, MODEL 2831 atoms, 2811 common with TARGET 
           Number of atoms possible to evaluate: 796 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    80.37           41.8   208    27.7   750     ARMSMC  
     SECONDARY STRUCTURE . .    76.06           46.0   126    33.5   376     ARMSMC  
     SURFACE . . . . . . . .    86.04           33.7   104    29.2   356     ARMSMC  
     BURIED  . . . . . . . .    74.27           50.0   104    26.4   394     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    83.02           34.4    93    29.0   321     ARMSSC1 
     RELIABLE SIDE CHAINS  .    87.12           29.3    75    26.3   285     ARMSSC1 
     SECONDARY STRUCTURE . .    78.74           37.7    61    35.7   171     ARMSSC1 
     SURFACE . . . . . . . .    78.61           32.0    50    30.1   166     ARMSSC1 
     BURIED  . . . . . . . .    87.88           37.2    43    27.7   155     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    70.69           37.3    59    28.8   205     ARMSSC2 
     RELIABLE SIDE CHAINS  .    66.01           37.8    45    29.8   151     ARMSSC2 
     SECONDARY STRUCTURE . .    66.78           38.5    39    34.5   113     ARMSSC2 
     SURFACE . . . . . . . .    79.53           22.9    35    31.5   111     ARMSSC2 
     BURIED  . . . . . . . .    55.33           58.3    24    25.5    94     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .   101.57           25.0    24    34.3    70     ARMSSC3 
     RELIABLE SIDE CHAINS  .   101.57           25.0    24    38.1    63     ARMSSC3 
     SECONDARY STRUCTURE . .   117.56           15.4    13    38.2    34     ARMSSC3 
     SURFACE . . . . . . . .    90.23           26.3    19    32.8    58     ARMSSC3 
     BURIED  . . . . . . . .   136.30           20.0     5    41.7    12     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    97.50           33.3    15    31.9    47     ARMSSC4 
     RELIABLE SIDE CHAINS  .    97.50           33.3    15    31.9    47     ARMSSC4 
     SECONDARY STRUCTURE . .   106.27           33.3     9    39.1    23     ARMSSC4 
     SURFACE . . . . . . . .   102.64           30.8    13    29.5    44     ARMSSC4 
     BURIED  . . . . . . . .    53.08           50.0     2    66.7     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  260 - 364  105  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    25    263 - 287      4.95    20.40 
  LONGEST_CONTINUOUS_SEGMENT    25    264 - 288      4.99    20.21 
  LCS LOCAL_SCORE:             19.56 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  260 - 364  105  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    337 - 351      1.88    27.13 
  LCS LOCAL_SCORE:              8.05 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  260 - 364  105  Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     9    325 - 333      0.92    24.10 
  LCS LOCAL_SCORE:              4.99 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     260       M     5    7   23       C        1   1   1   1   2   3   3   3   3   4   4   5   6   6   7   7   8   8   9  10  
 LCS     261       G     5    8   23       C        1   1   1   1   2   3   3   3   5   5   5   6   6   6   7   7   8   9   9  10  
 LCS     262       V     5    8   24       E        1   1   1   1   2   3   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     263       Y     6    8   25       E        1   1   1   1   2   3   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     264       N     6    8   25       E        1   1   1   1   1   2   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     265       V     6    8   25       E        1   1   1   1   2   3   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     266       T     6    8   25       E        1   1   1   1   2   3   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     267       V     6    8   25       E        1   1   1   1   2   3   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     268       D     6    8   25       E        0   1   1   1   2   3   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     269       D     3    7   25       E        0   0   1   1   2   3   3   3   5   5   5   6   6   7   7   7   8   8   9   9  
 LCS     270       L     3    6   25       E        0   0   1   1   2   3   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     271       K     4    5   25       E        0   1   1   1   1   2   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     272       M     4    5   25       E        0   1   1   1   2   2   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     273       N     4    5   25       E        0   1   1   1   2   2   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     274       G     4    5   25       C        0   1   1   1   2   2   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     275       T     3    6   25       C        0   0   0   1   1   2   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     276       T     4    6   25       C        0   1   1   1   1   2   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     277       N     4    6   25       E        0   1   1   1   1   2   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     278       G     7    7   25       E        1   1   1   1   2   3   3   3   5   5   5   6   6   7   7   7   8   9   9  10  
 LCS     279       L     7    7   25       E        1   1   1   1   2   2   3   3   4   4   5   6   6   7   7   7   8   9   9  10  
 LCS     280       R     7    7   25       E        1   1   1   1   2   2   3   3   4   4   5   6   6   7   7   8   9   9  10  10  
 LCS     281       I     7    7   25       E        1   1   1   1   2   2   3   4   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     282       K     7    7   25       E        1   1   1   1   2   2   3   4   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     283       S     7    7   25       C        1   1   1   1   2   2   3   4   4   4   5   6   6   7   7   8   8   9  10  10  
 LCS     284       D     7    7   25       C        1   1   1   1   2   2   3   4   4   4   5   6   6   6   7   7   8   9   9  10  
 LCS     285       K     5    5   25       C        0   1   1   1   1   2   3   4   4   4   5   6   6   7   7   7   8   9   9  10  
 LCS     286       S     5    5   25       C        1   1   1   1   1   2   3   4   4   4   5   6   6   7   7   7   8   9   9  10  
 LCS     287       A     5    5   25       C        1   1   1   1   1   2   3   4   4   4   5   6   6   7   7   7   8   9   9  10  
 LCS     288       A     4    7   25       C        1   1   1   1   2   2   3   4   4   4   5   6   6   7   7   7   8   9  10  10  
 LCS     289       G     4    7   18       C        1   1   1   1   2   2   3   4   4   4   5   5   6   6   7   7   8   9  10  10  
 LCS     290       V     4    7   18       E        0   1   1   1   2   2   3   4   4   4   5   6   6   7   7   7   8   9   9  10  
 LCS     291       V     4    7   21       E        0   1   1   1   2   2   3   4   4   4   5   6   6   7   8   8   9   9  10  10  
 LCS     292       N     4    7   21       E        0   1   1   1   2   2   3   4   4   4   5   6   7   7   8   8   9   9  10  10  
 LCS     293       G     4    7   21       E        0   1   1   1   2   2   3   4   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     294       V     3    9   21       E        0   1   1   2   2   2   3   4   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     295       R     4    9   21       E        1   1   1   2   2   3   3   4   5   5   6   6   7   7   8   8   9   9  10  10  
 LCS     296       Y     4    9   21       E        0   1   1   2   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     297       S     6    9   21       E        0   1   1   2   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     298       N     6    9   21       E        1   1   1   2   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     299       V     6    9   21       E        1   1   1   2   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     300       V     6    9   21       E        1   1   1   2   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     301       M     6    9   21       E        1   1   1   2   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     302       K     6    9   21       E        1   1   1   2   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     303       N     4    9   21       C        0   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     304       V     4    6   21       C        0   1   1   1   1   2   2   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     305       A     4    6   21       C        0   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     306       K     4    7   21       E        0   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     307       P     5    7   21       E        0   1   1   1   1   2   2   3   4   4   5   6   7   7   8   8   9   9  10  10  
 LCS     308       I     5    7   21       E        0   1   1   1   1   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     309       V     5    7   21       E        0   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     310       I     5    7   21       E        0   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     311       D     5    7   21       E        0   1   1   1   2   2   3   4   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     312       T     5    7   21       C        0   1   1   1   1   2   2   2   3   4   6   6   7   7   8   8   9   9  10  10  
 LCS     313       V     4    7   17       C        0   0   1   1   1   2   2   2   3   3   4   5   6   7   8   8   9   9  10  10  
 LCS     314       Y     4    5   17       C        0   1   1   1   1   1   2   2   2   3   4   5   5   5   6   7   8   9   9  10  
 LCS     315       E     4    5   17       C        0   1   1   1   1   2   2   2   2   3   3   3   5   5   6   7   8   9   9  10  
 LCS     316       K     4    5   17       C        0   1   1   1   1   2   2   2   2   3   3   3   4   5   6   7   7   8   9  10  
 LCS     317       K     4    6   17       C        0   1   1   1   1   1   2   2   2   3   3   3   4   5   6   7   7   8   9  10  
 LCS     318       E     3    6   17       C        0   0   1   1   1   1   2   2   2   3   3   3   4   5   6   7   8   9   9  10  
 LCS     319       G     4    6   17       C        0   1   1   1   1   1   2   2   2   3   4   5   6   6   7   7   8   9  10  10  
 LCS     320       S     4    6   14       C        0   1   1   1   1   1   2   2   2   3   4   5   6   6   7   8   9   9  10  10  
 LCS     321       N     4    6   14       C        0   1   1   1   1   1   2   2   2   3   4   5   6   7   8   8   9   9  10  10  
 LCS     322       V     4    6   16       C        0   1   1   1   1   1   2   2   2   3   3   4   5   6   7   8   9   9  10  10  
 LCS     323       P     4    5   16       C        0   1   1   1   1   2   2   3   3   3   3   4   4   5   5   5   6   6   7   9  
 LCS     324       D     4   10   16       E        0   1   1   1   1   2   2   3   3   3   3   4   4   5   5   5   6   6   7   9  
 LCS     325       W     9   10   16       E        0   1   2   2   2   2   2   3   3   3   3   4   4   5   6   6   7   7   7   9  
 LCS     326       S     9   10   16       E        1   2   2   2   2   2   2   2   3   3   3   4   5   6   6   7   7   8   9   9  
 LCS     327       D     9   10   16       E        1   2   2   2   2   2   2   2   3   3   3   4   5   6   6   7   7   8   9   9  
 LCS     328       I     9   10   16       E        1   2   2   2   2   2   2   3   3   3   3   4   5   6   6   7   7   8   9   9  
 LCS     329       T     9   10   16       E        1   2   2   2   2   2   2   3   3   3   3   4   5   6   6   7   7   8   9   9  
 LCS     330       F     9   10   16       E        1   2   2   2   2   2   2   3   3   3   3   4   5   6   6   7   7   8   9   9  
 LCS     331       K     9   10   21       E        1   2   2   2   2   2   2   3   3   3   3   4   5   6   7   7   8   8   9   9  
 LCS     332       D     9   10   21       E        1   2   2   2   2   2   2   2   3   3   3   4   5   6   7   7   8   8   9   9  
 LCS     333       V     9   10   21       E        0   2   2   2   2   2   2   2   3   4   4   5   6   7   7   7   8   8   9   9  
 LCS     334       T     3   10   21       E        0   0   0   0   1   2   2   3   4   4   5   6   6   7   7   7   8   8   9   9  
 LCS     335       S     4    6   21       E        0   1   1   1   1   2   2   2   3   3   4   5   6   7   7   7   8   8   9   9  
 LCS     336       E     4    6   21       C        0   1   1   1   2   2   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     337       T     4   15   21       C        0   1   2   2   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     338       K     6   15   21       C        1   1   2   2   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     339       G     6   15   21       C        0   1   1   2   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9  10  
 LCS     340       V     6   15   21       E        0   1   1   2   3   3   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     341       V     6   15   21       E        1   1   2   2   3   3   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     342       V     6   15   21       E        1   1   2   2   3   3   3   3   4   5   5   6   6   7   7   8   8   9  10  10  
 LCS     343       L     6   15   21       E        0   1   1   2   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     344       N     3   15   21       E        0   0   1   1   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     345       G     6   15   21       C        1   1   2   2   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     346       E     6   15   21       C        1   1   2   2   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     347       N     6   15   21       C        1   1   1   2   3   3   3   3   4   4   5   6   6   7   7   7   8   8   9   9  
 LCS     348       A     6   15   21       C        1   1   2   2   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     349       K     6   15   21       C        1   1   2   2   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     350       K     6   15   21       C        1   1   1   2   3   3   3   3   4   4   4   5   6   7   7   7   8   8   9   9  
 LCS     351       P     4   15   21       C        1   1   1   2   3   3   3   3   4   5   5   6   6   7   7   7   8   8   9   9  
 LCS     352       I     4    6   21       E        0   1   1   1   1   1   1   3   3   4   5   5   6   7   7   7   8   8   9   9  
 LCS     353       E     4    6   21       E        0   1   1   1   1   1   1   2   3   3   4   4   5   5   6   7   8   8   9   9  
 LCS     354       V     3    6   20       E        0   0   1   1   1   1   2   2   2   3   3   3   5   5   5   6   7   8   9   9  
 LCS     355       T     4    8   20       E        0   1   1   1   2   2   2   3   3   3   4   4   5   5   6   6   7   8   9   9  
 LCS     356       M     4    8   20       E        0   1   1   1   2   2   2   3   3   3   4   4   5   5   6   6   7   8   9   9  
 LCS     357       K     6    8   13       E        1   1   1   1   2   2   2   3   3   3   4   5   5   5   6   6   7   7   8   9  
 LCS     358       N     6    8   13       E        1   1   1   1   2   2   2   3   3   4   5   6   7   7   7   8   8   9  10  10  
 LCS     359       V     6    8   13       E        1   1   1   2   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     360       K     6    8   13       E        1   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  10  
 LCS     361       L     6    8   13       C        1   1   1   1   2   2   2   3   3   3   4   5   5   7   8   8   9   9  10  10  
 LCS     362       T     6    8   13       C        1   1   1   1   2   2   2   3   3   3   3   3   4   5   5   5   6   7   7   7  
 LCS     363       S     5    8   13       C        0   0   1   1   1   2   2   3   3   3   4   4   5   5   5   5   5   5   6   7  
 LCS     364       D     3    8   13       C        0   0   0   1   1   2   2   3   3   3   3   4   5   5   5   5   5   5   6   6  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.39 
 
 NUMBER_OF_CA_Tg:  376      NUMBER_OF_CA_Pr:  105      PERCENT_OF_CA:  27.93  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       8       9      11      13      15      15      16      19      20      23      25      28      30      31      32      34      37      39      41  
 GDT PERCENT_OF_CA_Pr    4.76    7.62    8.57   10.48   12.38   14.29   14.29   15.24   18.10   19.05   21.90   23.81   26.67   28.57   29.52   30.48   32.38   35.24   37.14   39.05 
 GDT PERCENT_OF_CA_Tg    1.33    2.13    2.39    2.93    3.46    3.99    3.99    4.26    5.05    5.32    6.12    6.65    7.45    7.98    8.24    8.51    9.04    9.84   10.37   10.90 
 GDT FRAGMENT: Beg-End 279-284 326-333 325-333 337-350 337-350 337-351 337-351 281-311 261-295 281-360 281-360 281-360 281-360 281-361 281-361 281-360 280-361 280-361 280-361 280-361 
 GDT RMS_LOCAL           0.20    0.56    0.92    1.44    1.67    1.88    1.88    2.95    3.32    3.77    4.11    4.38    4.72    5.37    5.43    5.41    5.96    6.35    6.56    6.83 
 GDT RMS_ALL_CA         20.75   22.35   24.10   27.68   27.68   27.13   27.13   19.96   23.46   19.27   19.36   19.20   19.20   18.78   18.81   19.06   18.67   18.66   18.68   18.69 
 
 
 TEST (CA)  RMS =  17.34               (Number of atoms:  105) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   17.34        105    27.9   376     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1651                            CRMSCA  
     SECONDARY STRUCTURE . .   16.19         63    33.5   188     CRMSCA  
     SURFACE . . . . . . . .   18.82         53    29.6   179     CRMSCA  
     BURIED  . . . . . . . .   15.68         52    26.4   197     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   17.39        516    27.9  1849     CRMSMC  
     SECONDARY STRUCTURE . .   16.22        313    33.5   935     CRMSMC  
     SURFACE . . . . . . . .   18.86        262    29.5   887     CRMSMC  
     BURIED  . . . . . . . .   15.74        254    26.4   962     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   18.87        377    28.8  1308     CRMSSC  
     RELIABLE SIDE CHAINS  .   18.95        313    28.2  1108     CRMSSC  
     SECONDARY STRUCTURE . .   17.74        249    34.8   715     CRMSSC  
     SURFACE . . . . . . . .   21.11        204    30.0   679     CRMSSC  
     BURIED  . . . . . . . .   15.84        173    27.5   629     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   18.04        796    28.3  2812     CRMSALL 
     SECONDARY STRUCTURE . .   16.93        501    34.2  1467     CRMSALL 
     SURFACE . . . . . . . .   19.85        415    29.7  1395     CRMSALL 
     BURIED  . . . . . . . .   15.82        381    26.9  1417     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.438      0.866       0.433    105    27.9   376     ERRCA  
     SECONDARY STRUCTURE . .   14.417      0.859       0.430     63    33.5   188     ERRCA  
     SURFACE . . . . . . . .   17.208      0.888       0.444     53    29.6   179     ERRCA  
     BURIED  . . . . . . . .   13.635      0.844       0.422     52    26.4   197     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.466      0.865       0.433    516    27.9  1849     ERRMC  
     SECONDARY STRUCTURE . .   14.402      0.857       0.428    313    33.5   935     ERRMC  
     SURFACE . . . . . . . .   17.181      0.887       0.444    262    29.5   887     ERRMC  
     BURIED  . . . . . . . .   13.697      0.843       0.422    254    26.4   962     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   16.613      0.872       0.436    377    28.8  1308     ERRSC  
     RELIABLE SIDE CHAINS  .   16.730      0.874       0.437    313    28.2  1108     ERRSC  
     SECONDARY STRUCTURE . .   15.585      0.866       0.433    249    34.8   715     ERRSC  
     SURFACE . . . . . . . .   19.168      0.896       0.448    204    30.0   679     ERRSC  
     BURIED  . . . . . . . .   13.600      0.843       0.421    173    27.5   629     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   15.953      0.868       0.434    796    28.3  2812     ERRALL 
     SECONDARY STRUCTURE . .   14.944      0.861       0.430    501    34.2  1467     ERRALL 
     SURFACE . . . . . . . .   18.024      0.891       0.445    415    29.7  1395     ERRALL 
     BURIED  . . . . . . . .   13.697      0.843       0.422    381    26.9  1417     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         1         4        10     105     376   DISTCA 
CA  (P)      0.00      0.00      0.27      1.06      2.66             376   DISTCA 
CA  (RMS)    0.00      0.00      2.62      3.75      6.79                   DISTCA 
 
ALL (N)         0         3         5        23        92     796    2812   DISTALL 
ALL (P)      0.00      0.11      0.18      0.82      3.27            2812   DISTALL 
ALL (RMS)    0.00      1.38      1.92      3.79      7.18                   DISTALL 
 
 
 
 
END of the results output 
