 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 83 , MODEL 83 , TARGET 376 
#          The number of residues possible to evaluate: 83 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   162     F     E     C             1.00 
 SSP   163     T     E     C             1.00 
 SSP   164     L     E     E             1.00 
 SSP   165     Y     E     E             1.00 
 SSP   166     N     E     E             1.00 
 SSP   167     V     E     E             1.00 
 SSP   168     S     E     E             1.00 
 SSP   169     L     E     C             1.00 
 SSP   170     I     E     C             1.00 
 SSP   171     N     C     E             1.00 
 SSP   172     S     C     C             1.00 
 SSP   173     P     C     C             1.00 
 SSP   174     N     C     C             1.00 
 SSP   175     F     C     C             1.00 
 SSP   176     H     C     C             1.00 
 SSP   177     V     E     E             1.00 
 SSP   178     V     E     E             1.00 
 SSP   179     F     E     E             1.00 
 SSP   180     S     E     E             1.00 
 SSP   181     D     C     E             1.00 
 SSP   182     G     C     E             1.00 
 SSP   183     D     E     C             1.00 
 SSP   184     G     E     C             1.00 
 SSP   185     F     E     C             1.00 
 SSP   186     T     E     C             1.00 
 SSP   187     A     E     C             1.00 
 SSP   188     W     E     C             1.00 
 SSP   189     K     E     C             1.00 
 SSP   190     T     E     C             1.00 
 SSP   191     T     E     E             1.00 
 SSP   192     I     E     E             1.00 
 SSP   193     K     E     E             1.00 
 SSP   194     T     C     C             1.00 
 SSP   195     P     C     C             1.00 
 SSP   196     S     C     C             1.00 
 SSP   197     T     C     C             1.00 
 SSP   198     A     C     E             1.00 
 SSP   199     R     C     C             1.00 
 SSP   200     N     C     C             1.00 
 SSP   201     T     C     C             1.00 
 SSP   202     D     C     C             1.00 
 SSP   203     G     C     C             1.00 
 SSP   204     I     E     C             1.00 
 SSP   205     D     E     C             1.00 
 SSP   206     P     E     C             1.00 
 SSP   207     M     E     C             1.00 
 SSP   208     S     C     C             1.00 
 SSP   209     S     C     C             1.00 
 SSP   210     K     E     C             1.00 
 SSP   211     N     E     E             1.00 
 SSP   212     I     E     E             1.00 
 SSP   213     T     E     E             1.00 
 SSP   214     I     E     E             1.00 
 SSP   215     A     E     E             1.00 
 SSP   216     Y     C     C             1.00 
 SSP   217     S     C     C             1.00 
 SSP   218     N     E     C             1.00 
 SSP   219     I     E     C             1.00 
 SSP   220     A     E     C             1.00 
 SSP   221     T     C     C             1.00 
 SSP   222     G     C     E             1.00 
 SSP   223     D     C     E             1.00 
 SSP   224     D     C     E             1.00 
 SSP   225     N     C     E             1.00 
 SSP   226     V     E     E             1.00 
 SSP   227     A     E     E             1.00 
 SSP   228     I     E     E             1.00 
 SSP   229     K     E     E             1.00 
 SSP   230     A     E     C             1.00 
 SSP   231     Y     C     C             1.00 
 SSP   232     K     C     C             1.00 
 SSP   233     G     C     C             1.00 
 SSP   234     R     C     C             1.00 
 SSP   235     A     C     C             1.00 
 SSP   236     E     C     C             1.00 
 SSP   237     T     E     E             1.00 
 SSP   238     R     E     E             1.00 
 SSP   239     N     E     E             1.00 
 SSP   240     I     E     E             1.00 
 SSP   241     S     E     E             1.00 
 SSP   242     I     E     E             1.00 
 SSP   243     L     E     C             1.00 
 SSP   244     H     E     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              62.7       0.0     54.0     75.8     22.1 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        63.1     100.0     64.7     61.4     22.1 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            8              75.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      83    100.0     62.7 
 
 BIN  0.00 - 1.00      1.00      83    100.0     62.7 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
 
 CONSIDERED - explicitly provided contacts (with positive confidence) or 
              non contacts (with negative confidence) possible to evaluate 
 SEP      - Minimum separation between residues considered 
 NPC      - Number of contacts predicted correctly 
 PC(P)    - Percent of contacts predicted correctly from CONSIDERED in PREDICTION 
 PC(T)    - Percent of contacts predicted correctly from CONSIDERED in TARGET with SEP limit 
 PC(TT)   - Percent of contacts predicted correctly from TOTAL in TARGET with SEP limit 
 
                        CONSIDERED     CONSIDERED       TOTAL          TOTAL 
                      in PREDICTION    in TARGET    in PREDICTION    in TARGET 
 ALL RESIDUES USED          84              84            84            376 
 ALL CONTACTS (< 8.0A)     375             398           375           2088 
 
               in PREDICTION      Predicted correctly          Submitted as        in TARGET 
                CONSIDERED     NPC   PC(P)   PC(T)   PC(TT)    NOT  predicted   CONSIDERED  TOTAL  |   SEP 
 RES CONTACTS       375        153   40.80   38.44    7.33       0     0.00         398      2088  |   1-9999 
 RES CONTACTS       174        137   78.74   84.57   17.41       0     0.00         162       787  |   1-4    
 RES CONTACTS        25          3   12.00   25.00    4.92       0     0.00          12        61  |   5-8    
 RES CONTACTS       176         13    7.39    5.80    1.05       0     0.00         224      1240  |   9-9999 
 
 
 
# WARNING! TARGET 2812 atoms, MODEL 2829 atoms, 2811 common with TARGET 
           Number of atoms possible to evaluate: 646 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    75.67           42.8   166    22.1   750     ARMSMC  
     SECONDARY STRUCTURE . .    62.76           52.0   100    26.6   376     ARMSMC  
     SURFACE . . . . . . . .    83.83           42.3    52    14.6   356     ARMSMC  
     BURIED  . . . . . . . .    71.64           43.0   114    28.9   394     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    81.84           31.9    72    22.4   321     ARMSSC1 
     RELIABLE SIDE CHAINS  .    82.90           29.4    68    23.9   285     ARMSSC1 
     SECONDARY STRUCTURE . .    72.33           40.0    45    26.3   171     ARMSSC1 
     SURFACE . . . . . . . .    79.99           37.5    24    14.5   166     ARMSSC1 
     BURIED  . . . . . . . .    82.76           29.2    48    31.0   155     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    64.70           46.0    50    24.4   205     ARMSSC2 
     RELIABLE SIDE CHAINS  .    57.00           52.8    36    23.8   151     ARMSSC2 
     SECONDARY STRUCTURE . .    66.54           50.0    32    28.3   113     ARMSSC2 
     SURFACE . . . . . . . .    70.64           50.0    20    18.0   111     ARMSSC2 
     BURIED  . . . . . . . .    60.41           43.3    30    31.9    94     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    85.86           20.0    10    14.3    70     ARMSSC3 
     RELIABLE SIDE CHAINS  .    85.86           20.0    10    15.9    63     ARMSSC3 
     SECONDARY STRUCTURE . .    75.83           33.3     6    17.6    34     ARMSSC3 
     SURFACE . . . . . . . .    93.66           25.0     8    13.8    58     ARMSSC3 
     BURIED  . . . . . . . .    42.05            0.0     2    16.7    12     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .   100.41            0.0     8    17.0    47     ARMSSC4 
     RELIABLE SIDE CHAINS  .   100.41            0.0     8    17.0    47     ARMSSC4 
     SECONDARY STRUCTURE . .   105.44            0.0     5    21.7    23     ARMSSC4 
     SURFACE . . . . . . . .    91.36            0.0     7    15.9    44     ARMSSC4 
     BURIED  . . . . . . . .   149.09            0.0     1    33.3     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  162 - 245  84   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    23    210 - 232      4.95    14.37 
  LCS LOCAL_SCORE:             24.87 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  162 - 245  84   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    233 - 245      1.86    14.86 
  LCS LOCAL_SCORE:             10.70 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  162 - 245  84   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    237 - 244      0.96    14.48 
  LCS LOCAL_SCORE:              6.38 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     162       F     6    7   18       E        0   1   1   1   2   2   2   3   4   4   5   5   6   6   7   8   9   9  10  11  
 LCS     163       T     6    7   18       E        0   1   1   1   2   2   2   3   4   4   4   5   6   6   7   8   9   9  10  11  
 LCS     164       L     6    7   18       E        0   1   1   1   2   2   3   3   4   4   4   5   6   6   7   8   9  10  11  11  
 LCS     165       Y     6    7   18       E        0   1   1   1   2   2   3   3   4   4   4   5   6   6   7   8   9  10  11  11  
 LCS     166       N     6    8   18       E        0   1   1   1   2   2   3   3   4   4   4   5   6   6   7   8   9  10  11  11  
 LCS     167       V     6    8   18       E        0   1   1   1   2   2   3   3   4   4   4   5   6   6   7   8   9  10  11  11  
 LCS     168       S     4   10   18       E        0   1   1   2   2   2   3   3   4   4   4   5   6   6   7   8   9  10  11  11  
 LCS     169       L     6   10   18       E        0   1   1   2   2   2   3   3   4   5   5   6   6   7   7   8   9  10  11  11  
 LCS     170       I     6   10   18       E        0   1   1   2   2   2   3   3   4   4   5   6   6   7   7   8   9  10  11  11  
 LCS     171       N     6   10   18       C        0   1   1   2   2   2   3   3   4   4   5   6   6   7   7   8   9  10  11  11  
 LCS     172       S     6   10   21       C        0   1   1   2   2   2   3   3   4   5   5   6   6   7   7   8   9  10  11  11  
 LCS     173       P     6   10   21       C        0   1   1   2   2   2   3   3   4   5   5   6   6   7   7   8   9  10  11  11  
 LCS     174       N     6   10   21       C        0   1   1   2   2   2   3   3   4   5   5   6   6   7   7   8   9  10  11  11  
 LCS     175       F     5   10   21       C        0   1   1   2   2   2   3   3   4   4   5   6   6   7   7   8   9  10  11  11  
 LCS     176       H     6   10   21       C        1   1   1   2   2   2   3   3   4   5   5   6   6   7   7   8   9  10  11  11  
 LCS     177       V     6   10   21       E        1   1   1   2   3   3   4   5   5   5   5   6   7   8   8   8   9  10  11  12  
 LCS     178       V     6    8   21       E        1   1   1   1   1   2   4   5   5   5   5   6   7   8   8   8   9  10  11  12  
 LCS     179       F     6    8   21       E        1   2   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     180       S     6    9   21       E        1   2   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     181       D     6    9   21       C        1   1   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     182       G     6    9   21       C        1   1   1   2   2   2   3   3   4   5   6   6   7   8   8   8   9  10  11  12  
 LCS     183       D     6    9   21       E        1   1   1   2   2   2   3   3   4   5   5   6   6   7   7   8   9  10  11  12  
 LCS     184       G     6    9   21       E        1   1   1   2   2   2   2   3   4   4   5   6   6   7   7   8   9  10  11  11  
 LCS     185       F     6    9   21       E        0   1   1   2   2   2   2   3   4   4   5   5   6   6   7   8   9  10  11  11  
 LCS     186       T     6   10   21       E        0   1   1   2   2   2   2   3   4   4   5   5   6   6   7   8   9   9  10  11  
 LCS     187       A     4   10   21       E        0   1   1   2   2   2   2   2   3   4   4   5   6   6   7   8   9   9  10  11  
 LCS     188       W     4   10   21       E        0   1   1   2   2   2   2   3   4   4   5   5   6   6   7   8   9   9  10  11  
 LCS     189       K     4   10   21       E        0   1   1   2   2   2   2   2   3   4   4   5   6   6   7   8   9   9   9  10  
 LCS     190       T     5   10   21       E        1   1   1   2   2   2   2   3   4   4   5   5   6   6   7   8   9   9  10  11  
 LCS     191       T     5   10   21       E        1   1   1   2   2   2   2   2   2   3   5   5   6   6   7   8   9   9  10  11  
 LCS     192       I     5   10   21       E        1   1   1   2   2   2   2   2   2   3   4   5   6   6   7   8   9   9  10  11  
 LCS     193       K     5   10   19       E        1   1   1   2   2   2   2   2   2   3   3   4   5   6   7   8   9   9  10  11  
 LCS     194       T     5   10   19       C        0   1   1   2   2   2   2   2   3   3   4   4   5   6   7   8   9  10  11  11  
 LCS     195       P     4   10   19       C        0   0   1   1   2   2   2   2   3   3   4   4   5   6   7   7   9   9  10  11  
 LCS     196       S     4    8   19       C        0   0   1   1   1   2   2   2   3   3   4   4   5   6   7   8   9  10  11  11  
 LCS     197       T     4    6   19       C        0   1   1   1   1   2   2   2   2   3   4   4   5   6   7   7   9  10  11  11  
 LCS     198       A     4    6   19       C        0   1   1   1   1   1   2   2   2   3   3   4   5   6   7   7   9   9  10  11  
 LCS     199       R     4    6   19       C        0   1   1   1   1   1   2   2   2   3   3   4   5   6   7   8   9  10  11  12  
 LCS     200       N     4    6   21       C        0   1   1   1   1   3   4   4   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     201       T     3    6   21       C        0   0   1   1   1   2   3   3   4   5   6   6   7   8   8   8   9  10  11  12  
 LCS     202       D     3    7   21       C        0   0   1   1   2   2   3   3   4   5   6   6   7   8   8   8   9  10  11  12  
 LCS     203       G     4    7   21       C        1   1   1   1   2   2   3   3   4   5   6   6   7   8   8   8   9  10  11  12  
 LCS     204       I     4    7   21       E        1   1   1   1   2   2   3   3   4   5   6   6   7   8   8   8   9  10  11  12  
 LCS     205       D     4    7   21       E        1   1   1   1   1   2   3   3   4   4   5   5   6   6   7   8   9  10  11  12  
 LCS     206       P     4    7   21       E        1   1   1   1   1   2   3   3   4   4   4   5   6   6   7   8   9  10  11  12  
 LCS     207       M     4    7   21       E        1   1   1   1   2   2   3   3   4   4   5   6   6   7   7   8   9  10  11  12  
 LCS     208       S     4    7   21       C        1   1   1   1   2   2   3   3   4   4   5   6   6   7   7   8   9  10  11  12  
 LCS     209       S     5    9   21       C        0   1   1   1   2   2   3   3   4   5   5   6   6   7   7   8   9  10  11  12  
 LCS     210       K     6    9   23       E        0   1   1   1   2   2   3   3   4   5   5   6   6   7   7   8   9  10  11  12  
 LCS     211       N     6    9   23       E        1   1   1   1   2   2   3   3   4   4   4   5   6   6   7   8   9  10  11  12  
 LCS     212       I     6    9   23       E        1   1   1   1   2   2   3   3   4   4   4   5   6   6   7   8   9  10  11  12  
 LCS     213       T     6    9   23       E        1   1   1   1   2   2   3   3   4   4   4   5   5   6   6   8   9  10  11  12  
 LCS     214       I     6    9   23       E        1   1   1   1   2   2   3   3   4   4   4   5   5   6   7   8   9  10  11  12  
 LCS     215       A     6    9   23       E        0   1   1   1   2   2   3   3   4   4   4   5   5   6   7   8   9  10  11  12  
 LCS     216       Y     4    9   23       C        0   1   1   1   2   2   3   3   4   4   4   5   5   6   7   8   9  10  11  12  
 LCS     217       S     4    9   23       C        0   1   1   1   2   2   3   3   4   4   4   5   5   6   7   8   9  10  11  12  
 LCS     218       N     4    9   23       E        0   1   1   1   2   2   3   3   4   4   5   5   6   8   8   8   9  10  11  12  
 LCS     219       I     4    7   23       E        0   1   1   1   2   2   3   3   3   4   4   5   6   7   8   8   9  10  11  12  
 LCS     220       A     4    7   23       E        0   0   1   1   2   2   3   3   3   4   4   5   6   6   7   8   9  10  11  12  
 LCS     221       T     4    7   23       C        0   0   1   1   1   2   3   3   3   4   5   6   6   7   7   8   9  10  11  11  
 LCS     222       G     4    7   23       C        0   1   1   1   2   2   3   3   4   5   5   6   6   7   7   8   9   9  10  11  
 LCS     223       D     4    7   23       C        0   1   1   1   2   2   3   3   4   4   5   6   6   7   7   8   9   9   9  10  
 LCS     224       D     4    7   23       C        0   1   1   1   2   2   3   3   4   5   5   6   6   7   7   8   9  10  10  11  
 LCS     225       N     6    7   23       C        1   1   1   1   2   2   3   3   4   5   5   6   6   7   7   8   9  10  11  12  
 LCS     226       V     6    7   23       E        1   1   1   1   2   2   3   3   4   5   5   6   6   7   8   8   9  10  11  12  
 LCS     227       A     6    7   23       E        1   1   1   1   2   2   3   3   4   5   5   6   6   8   8   8   9  10  11  12  
 LCS     228       I     6    7   23       E        1   1   1   1   2   2   3   3   4   5   6   6   7   8   8   8   9  10  11  12  
 LCS     229       K     6    7   23       E        1   1   1   1   1   2   3   3   4   5   6   6   7   8   8   8   9  10  11  12  
 LCS     230       A     6    7   23       E        0   1   1   1   1   2   3   3   4   5   5   6   6   8   8   8   9  10  11  12  
 LCS     231       Y     5    7   23       C        0   1   1   1   1   2   2   3   3   4   5   6   7   8   8   8   9  10  11  12  
 LCS     232       K     3    4   23       C        0   0   0   1   2   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     233       G     6   13   22       C        0   1   1   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     234       R     6   13   20       C        1   1   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     235       A     6   13   20       C        1   1   1   2   2   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     236       E     6   13   20       C        1   1   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     237       T     8   13   20       E        1   1   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     238       R     8   13   20       E        0   2   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     239       N     8   13   20       E        0   2   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     240       I     8   13   20       E        0   2   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     241       S     8   13   20       E        0   2   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     242       I     8   13   20       E        0   2   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     243       L     8   13   20       E        0   1   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     244       H     8   13   20       E        0   1   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS     245       N     3   13   20       E        0   2   2   2   3   3   4   5   5   5   6   6   7   8   8   8   9  10  11  12  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.32 
 
 NUMBER_OF_CA_Tg:  376      NUMBER_OF_CA_Pr:   84      PERCENT_OF_CA:  22.34  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       8      10      11      14      15      18      19      19      20      23      25      27      31      32      33      37      41      45      48  
 GDT PERCENT_OF_CA_Pr    5.95    9.52   11.90   13.10   16.67   17.86   21.43   22.62   22.62   23.81   27.38   29.76   32.14   36.90   38.10   39.29   44.05   48.81   53.57   57.14 
 GDT PERCENT_OF_CA_Tg    1.33    2.13    2.66    2.93    3.72    3.99    4.79    5.05    5.05    5.32    6.12    6.65    7.18    8.24    8.51    8.78    9.84   10.90   11.97   12.77 
 GDT FRAGMENT: Beg-End 176-180 179-245 179-245 179-244 177-245 177-245 177-245 177-245 177-245 177-245 179-245 179-245 177-245 177-245 177-245 177-245 179-245 177-245 177-245 177-245 
 GDT RMS_LOCAL           0.32    0.82    0.97    1.16    1.65    1.78    2.18    2.37    2.37    2.67    3.79    4.10    4.37    4.93    5.12    5.34    6.01    6.56    6.85    7.24 
 GDT RMS_ALL_CA         18.06   15.27   15.10   14.87   15.32   15.41   15.48   15.48   15.48   15.11   14.43   14.38   14.40   14.24   14.13   13.99   14.17   13.86   13.85   13.62 
 
 
 TEST (CA)  RMS =  12.00               (Number of atoms:   84) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   12.00         84    22.3   376     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1429                            CRMSCA  
     SECONDARY STRUCTURE . .   12.49         51    27.1   188     CRMSCA  
     SURFACE . . . . . . . .   12.55         26    14.5   179     CRMSCA  
     BURIED  . . . . . . . .   11.75         58    29.4   197     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   12.07        414    22.4  1849     CRMSMC  
     SECONDARY STRUCTURE . .   12.62        253    27.1   935     CRMSMC  
     SURFACE . . . . . . . .   12.68        129    14.5   887     CRMSMC  
     BURIED  . . . . . . . .   11.78        285    29.6   962     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   14.21        311    23.8  1308     CRMSSC  
     RELIABLE SIDE CHAINS  .   14.25        271    24.5  1108     CRMSSC  
     SECONDARY STRUCTURE . .   14.66        196    27.4   715     CRMSSC  
     SURFACE . . . . . . . .   15.10        114    16.8   679     CRMSSC  
     BURIED  . . . . . . . .   13.67        197    31.3   629     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   13.06        646    23.0  2812     CRMSALL 
     SECONDARY STRUCTURE . .   13.60        399    27.2  1467     CRMSALL 
     SURFACE . . . . . . . .   13.87        218    15.6  1395     CRMSALL 
     BURIED  . . . . . . . .   12.62        428    30.2  1417     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.293      0.806       0.403     84    22.3   376     ERRCA  
     SECONDARY STRUCTURE . .   10.644      0.800       0.400     51    27.1   188     ERRCA  
     SURFACE . . . . . . . .   10.759      0.803       0.401     26    14.5   179     ERRCA  
     BURIED  . . . . . . . .   10.084      0.807       0.404     58    29.4   197     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   10.340      0.808       0.404    414    22.4  1849     ERRMC  
     SECONDARY STRUCTURE . .   10.787      0.806       0.403    253    27.1   935     ERRMC  
     SURFACE . . . . . . . .   10.876      0.812       0.406    129    14.5   887     ERRMC  
     BURIED  . . . . . . . .   10.097      0.806       0.403    285    29.6   962     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   12.205      0.833       0.418    311    23.8  1308     ERRSC  
     RELIABLE SIDE CHAINS  .   12.199      0.833       0.417    271    24.5  1108     ERRSC  
     SECONDARY STRUCTURE . .   12.376      0.826       0.415    196    27.4   715     ERRSC  
     SURFACE . . . . . . . .   13.311      0.846       0.423    114    16.8   679     ERRSC  
     BURIED  . . . . . . . .   11.564      0.826       0.414    197    31.3   629     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   11.152      0.819       0.410    646    23.0  2812     ERRALL 
     SECONDARY STRUCTURE . .   11.516      0.816       0.409    399    27.2  1467     ERRALL 
     SURFACE . . . . . . . .   12.020      0.829       0.415    218    15.6  1395     ERRALL 
     BURIED  . . . . . . . .   10.710      0.814       0.408    428    30.2  1417     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         1         3         5        29      84     376   DISTCA 
CA  (P)      0.00      0.27      0.80      1.33      7.71             376   DISTCA 
CA  (RMS)    0.00      1.14      1.95      3.04      7.46                   DISTCA 
 
ALL (N)         1         8        13        33       203     646    2812   DISTALL 
ALL (P)      0.04      0.28      0.46      1.17      7.22            2812   DISTALL 
ALL (RMS)    0.43      1.42      1.92      3.36      7.50                   DISTALL 
 
 
 
 
END of the results output 
