 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 86 , MODEL 86 , TARGET 376 
#          The number of residues possible to evaluate: 86 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   258     E     E     C             1.00 
 SSP   259     T     E     E             1.00 
 SSP   260     M     C     E             1.00 
 SSP   261     G     C     E             1.00 
 SSP   262     V     E     E             1.00 
 SSP   263     Y     E     E             1.00 
 SSP   264     N     E     E             1.00 
 SSP   265     V     E     E             1.00 
 SSP   266     T     E     E             1.00 
 SSP   267     V     E     E             1.00 
 SSP   268     D     E     C             1.00 
 SSP  BREAK 
 SSP   270     L     E     C             1.00 
 SSP   271     K     E     C             1.00 
 SSP  BREAK 
 SSP   273     N     E     C             1.00 
 SSP   274     G     C     C             1.00 
 SSP   275     T     C     C             1.00 
 SSP   276     T     C     C             1.00 
 SSP   277     N     E     C             1.00 
 SSP   278     G     E     E             1.00 
 SSP   279     L     E     E             1.00 
 SSP   280     R     E     E             1.00 
 SSP   281     I     E     E             1.00 
 SSP   282     K     E     E             1.00 
 SSP   283     S     C     E             1.00 
 SSP   284     D     C     C             1.00 
 SSP   285     K     C     C             1.00 
 SSP   286     S     C     C             1.00 
 SSP   287     A     C     C             1.00 
 SSP   288     A     C     C             1.00 
 SSP   289     G     C     C             1.00 
 SSP   290     V     E     E             1.00 
 SSP   291     V     E     C             1.00 
 SSP   292     N     E     C             1.00 
 SSP   293     G     E     C             1.00 
 SSP   294     V     E     C             1.00 
 SSP  BREAK 
 SSP   296     Y     E     E             1.00 
 SSP   297     S     E     E             1.00 
 SSP   298     N     E     E             1.00 
 SSP   299     V     E     E             1.00 
 SSP   300     V     E     E             1.00 
 SSP   301     M     E     E             1.00 
 SSP   302     K     E     E             1.00 
 SSP   303     N     C     C             1.00 
 SSP  BREAK 
 SSP   305     A     C     C             1.00 
 SSP   306     K     E     C             1.00 
 SSP   307     P     E     E             1.00 
 SSP   308     I     E     E             1.00 
 SSP   309     V     E     E             1.00 
 SSP   310     I     E     E             1.00 
 SSP   311     D     E     E             1.00 
 SSP   312     T     C     E             1.00 
 SSP   313     V     C     E             1.00 
 SSP   314     Y     C     E             1.00 
 SSP   315     E     C     E             1.00 
 SSP   316     K     C     C             1.00 
 SSP   317     K     C     C             1.00 
 SSP  BREAK 
 SSP   319     G     C     C             1.00 
 SSP  BREAK 
 SSP   326     S     E     C             1.00 
 SSP   327     D     E     C             1.00 
 SSP   328     I     E     E             1.00 
 SSP   329     T     E     E             1.00 
 SSP   330     F     E     E             1.00 
 SSP   331     K     E     C             1.00 
 SSP   332     D     E     C             1.00 
 SSP   333     V     E     C             1.00 
 SSP  BREAK 
 SSP   337     T     C     C             1.00 
 SSP   338     K     C     C             1.00 
 SSP   339     G     C     E             1.00 
 SSP   340     V     E     E             1.00 
 SSP   341     V     E     E             1.00 
 SSP   342     V     E     E             1.00 
 SSP   343     L     E     C             1.00 
 SSP   344     N     E     C             1.00 
 SSP  BREAK 
 SSP   346     E     C     C             1.00 
 SSP   347     N     C     C             1.00 
 SSP  BREAK 
 SSP   351     P     C     C             1.00 
 SSP  BREAK 
 SSP   358     N     E     C             1.00 
 SSP   359     V     E     E             1.00 
 SSP   360     K     E     E             1.00 
 SSP   361     L     C     E             1.00 
 SSP   362     T     C     E             1.00 
 SSP   363     S     C     E             1.00 
 SSP   364     D     C     E             1.00 
 SSP   365     S     C     C             1.00 
 SSP   366     T     E     C             1.00 
 SSP   367     W     E     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              61.6       0.0     61.1     62.5     22.9 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        66.6     100.0     64.7     69.8     22.9 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            8             100.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 1 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      86    100.0     61.6 
 
 BIN  0.00 - 1.00      1.00      86    100.0     61.6 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 345 
 
# WARNING! TARGET 2812 atoms, MODEL 2506 atoms, 2506 common with TARGET 
           Number of atoms possible to evaluate: 344 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    67.79           48.7   150    20.0   750     ARMSMC  
     SECONDARY STRUCTURE . .    58.05           54.2    96    25.5   376     ARMSMC  
     SURFACE . . . . . . . .    77.52           47.8    67    18.8   356     ARMSMC  
     BURIED  . . . . . . . .    58.78           49.4    83    21.1   394     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   321     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   285     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   171     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   166     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0   155     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   205     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   151     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   113     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   111     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    94     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    70     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    63     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    34     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    58     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    47     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    47     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    23     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    44     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  258 - 268  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11    258 - 268      3.44     3.44 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  2  273 - 294  22   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    15    273 - 287      4.74     8.53 
  LONGEST_CONTINUOUS_SEGMENT    15    280 - 294      4.45    15.53 
  LCS LOCAL_SCORE:             68.18 
 
 FRAGMENT  3  296 - 303  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    296 - 303      1.72     1.72 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  305 - 317  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    13    305 - 317      4.45     4.45 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  5  326 - 333  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    326 - 333      1.65     1.65 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  337 - 344  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    337 - 344      1.81     1.81 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  7  358 - 367  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    10    358 - 367      4.67     4.67 
  LCS LOCAL_SCORE:            100.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  258 - 268  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    261 - 268      1.99     7.59 
  LCS LOCAL_SCORE:             70.25 
 
 FRAGMENT  2  273 - 294  22   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    277 - 284      1.98     8.61 
  LONGEST_CONTINUOUS_SEGMENT     8    286 - 293      1.79    10.11 
  LCS LOCAL_SCORE:             34.09 
 
 FRAGMENT  3  296 - 303  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    296 - 303      1.72     1.72 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  4  305 - 317  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    305 - 312      1.91     8.19 
  LCS LOCAL_SCORE:             51.48 
 
 FRAGMENT  5  326 - 333  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    326 - 333      1.65     1.65 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  6  337 - 344  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    337 - 344      1.81     1.81 
  LCS LOCAL_SCORE:            100.00 
 
 FRAGMENT  7  358 - 367  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     7    358 - 364      1.70     7.10 
  LCS LOCAL_SCORE:             64.00 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  258 - 268  11   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    263 - 268      0.64    10.13 
  LCS LOCAL_SCORE:             48.76 
 
 FRAGMENT  2  273 - 294  22   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    278 - 283      0.92     9.02 
  LONGEST_CONTINUOUS_SEGMENT     6    279 - 284      0.82     9.11 
  LCS LOCAL_SCORE:             19.63 
 
 FRAGMENT  3  296 - 303  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     6    297 - 302      0.93     2.68 
  LCS LOCAL_SCORE:             65.62 
 
 FRAGMENT  4  305 - 317  13   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    307 - 311      0.87    10.95 
  LONGEST_CONTINUOUS_SEGMENT     5    308 - 312      0.95     9.60 
  LCS LOCAL_SCORE:             34.32 
 
 FRAGMENT  5  326 - 333  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    326 - 330      0.73     1.88 
  LONGEST_CONTINUOUS_SEGMENT     5    327 - 331      0.79     2.43 
  LCS LOCAL_SCORE:             56.25 
 
 FRAGMENT  6  337 - 344  8    Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     4    338 - 341      0.76     3.49 
  LONGEST_CONTINUOUS_SEGMENT     4    339 - 342      0.77     3.70 
  LONGEST_CONTINUOUS_SEGMENT     4    340 - 343      0.66     3.61 
  LONGEST_CONTINUOUS_SEGMENT     4    341 - 344      0.88     3.62 
  LCS LOCAL_SCORE:             48.44 
 
 FRAGMENT  7  358 - 367  10   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    358 - 362      0.61     6.95 
  LCS LOCAL_SCORE:             44.00 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     258       E     4    7   11       E        0   0   1   1   1   1   1   2   2   2   3   3   3   6   6   6   6   7   9   9  
 LCS     259       T     4    7   11       E        0   0   1   1   1   1   1   2   2   3   3   5   5   6   6   6   6   7   9   9  
 LCS     260       M     5    7   11       C        1   1   1   1   1   2   2   3   3   3   4   5   5   6   6   6   6   7   9   9  
 LCS     261       G     5    8   11       C        1   1   1   1   2   2   3   3   3   4   4   5   5   6   6   6   8   8   9   9  
 LCS     262       V     5    8   11       E        1   1   1   1   2   2   3   3   3   4   4   5   5   6   6   7   8   8   9   9  
 LCS     263       Y     6    8   11       E        1   1   1   1   2   2   3   3   3   4   4   5   5   6   6   7   8   8   9   9  
 LCS     264       N     6    8   11       E        1   1   1   1   1   2   2   3   3   4   4   5   5   6   6   7   8   8   9   9  
 LCS     265       V     6    8   11       E        1   1   1   1   2   2   3   3   3   4   4   5   5   6   6   7   8   8   9   9  
 LCS     266       T     6    8   11       E        1   1   1   1   1   2   3   3   3   4   4   5   5   6   6   7   8   8   9   9  
 LCS     267       V     6    8   11       E        1   1   1   1   2   2   3   3   3   4   4   5   5   6   6   7   8   8   9   9  
 LCS     268       D     6    8   11       E        1   1   1   1   2   2   3   3   3   4   4   5   5   6   6   7   8   8   9   9  
 LCS     269       D     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     270       L     0    0    0       E        0   0   0   0   2   2   3   3   3   4   4   5   5   5   6   7   8   8   8   9  
 LCS     271       K     0    0    0       E        0   0   0   1   1   2   3   3   3   4   4   5   5   5   6   7   8   8   8   9  
 LCS     272       M     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     273       N     3    4   15       E        0   0   0   0   1   2   2   2   3   4   4   5   5   5   6   7   8   8   8   9  
 LCS     274       G     3    6   15       C        0   0   0   1   1   2   3   3   3   4   4   5   5   5   6   7   8   8   8   9  
 LCS     275       T     3    7   15       C        0   0   0   1   1   2   2   3   3   4   4   5   5   5   6   7   8   8   8   9  
 LCS     276       T     4    7   15       C        0   1   1   1   2   2   3   3   3   4   4   5   5   5   6   7   8   8   8   9  
 LCS     277       N     4    8   15       E        0   1   1   1   1   2   3   3   3   4   4   5   5   5   6   7   8   8   8   9  
 LCS     278       G     6    8   15       E        1   1   1   1   2   2   3   3   3   4   4   5   5   5   6   7   8   8   8   9  
 LCS     279       L     6    8   15       E        1   1   1   1   2   2   2   3   3   4   4   5   5   5   6   7   8   8   8   9  
 LCS     280       R     6    8   15       E        1   1   1   1   2   2   2   3   3   4   4   5   6   7   7   7   8   8   9  10  
 LCS     281       I     6    8   15       E        1   1   1   1   2   2   3   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     282       K     6    8   15       E        1   1   1   1   2   2   3   3   3   5   5   6   6   7   7   8   8   9   9  10  
 LCS     283       S     6    8   15       C        1   1   1   1   2   2   2   3   3   4   5   5   6   7   7   8   8   9   9  10  
 LCS     284       D     6    8   15       C        1   1   1   1   2   2   2   2   3   3   4   5   5   5   6   7   8   8   9  10  
 LCS     285       K     3    6   15       C        0   0   0   1   1   1   2   2   3   3   5   5   5   7   7   8   8   9   9  10  
 LCS     286       S     3    8   15       C        0   0   0   1   1   2   2   2   3   4   5   5   6   7   7   8   8   9   9  10  
 LCS     287       A     3    8   15       C        0   0   1   1   1   2   2   3   3   4   5   5   6   7   7   8   8   9   9  10  
 LCS     288       A     4    8   15       C        0   1   1   1   1   2   2   2   3   4   5   5   6   7   7   8   8   9   9  10  
 LCS     289       G     4    8   15       C        0   1   1   1   1   2   2   2   3   3   5   5   6   7   7   8   8   9   9  10  
 LCS     290       V     4    8   15       E        0   1   1   1   1   2   2   2   3   3   4   4   5   6   6   7   8   8   9  10  
 LCS     291       V     4    8   15       E        0   1   1   1   2   2   3   3   3   4   5   5   6   7   7   8   8   9   9  10  
 LCS     292       N     4    8   15       E        0   0   1   1   2   2   3   3   3   4   5   6   6   7   7   8   8   9   9  10  
 LCS     293       G     4    8   15       E        0   1   1   1   1   2   2   3   3   5   5   6   6   7   7   8   8   9   9  10  
 LCS     294       V     3    7   15       E        0   0   1   1   2   2   2   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     295       R     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     296       Y     3    8    8       E        0   0   0   1   2   2   2   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     297       S     6    8    8       E        1   1   1   2   2   2   2   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     298       N     6    8    8       E        0   1   1   2   2   2   2   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     299       V     6    8    8       E        1   1   1   2   2   2   2   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     300       V     6    8    8       E        1   1   1   2   2   2   2   3   4   5   5   6   6   7   7   7   8   9   9  10  
 LCS     301       M     6    8    8       E        1   1   1   2   2   2   2   3   4   5   5   6   6   7   7   7   8   9   9  10  
 LCS     302       K     6    8    8       E        0   1   1   2   2   2   2   3   4   5   5   6   6   7   7   7   8   9   9  10  
 LCS     303       N     3    8    8       C        0   0   1   1   1   2   2   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     304       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     305       A     4    8   13       C        0   1   1   1   1   2   2   3   3   4   5   6   6   7   7   8   8   9   9  10  
 LCS     306       K     4    8   13       E        0   1   1   1   1   2   2   3   3   5   5   6   6   7   7   8   8   9   9  10  
 LCS     307       P     5    8   13       E        0   1   1   1   2   2   3   3   3   4   5   6   6   7   7   8   8   9   9  10  
 LCS     308       I     5    8   13       E        0   1   1   1   2   2   3   3   3   4   5   6   6   7   7   8   8   9   9  10  
 LCS     309       V     5    8   13       E        0   1   1   2   2   2   3   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     310       I     5    8   13       E        0   1   1   1   2   2   3   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     311       D     5    8   13       E        0   1   1   1   2   2   3   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     312       T     5    8   13       C        0   1   1   1   2   2   3   3   3   4   5   6   6   7   7   8   8   9   9  10  
 LCS     313       V     4    7   13       C        0   0   1   1   1   1   1   2   2   2   4   4   4   5   6   7   8   9   9  10  
 LCS     314       Y     4    4   13       C        0   1   1   1   1   1   1   1   2   2   2   3   3   3   3   4   4   4   8   9  
 LCS     315       E     4    4   13       C        0   1   1   1   1   1   1   2   2   2   2   3   3   3   3   4   4   4   4   5  
 LCS     316       K     4    4   13       C        0   1   1   1   1   1   1   2   2   2   2   3   3   3   3   4   4   4   4   5  
 LCS     317       K     4    4   13       C        0   1   1   1   1   1   1   1   2   2   2   3   3   3   3   4   4   4   4   5  
 LCS     318       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     319       G     0    0    0       C        0   0   0   0   0   0   0   0   1   1   1   1   2   2   2   2   2   2   2   6  
 LCS     320       S     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     321       N     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     322       V     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     323       P     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     324       D     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     325       W     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     326       S     5    8    8       E        0   1   1   1   2   2   2   2   3   3   4   4   5   6   6   6   7   8   9   9  
 LCS     327       D     5    8    8       E        0   1   1   1   2   2   2   2   3   3   4   4   5   6   6   6   6   7   9   9  
 LCS     328       I     5    8    8       E        0   1   1   1   2   2   2   2   3   3   4   4   5   6   6   6   6   7   9   9  
 LCS     329       T     5    8    8       E        0   1   1   1   2   2   2   2   3   3   4   4   5   6   6   6   6   7   9   9  
 LCS     330       F     5    8    8       E        0   1   1   1   2   2   2   3   3   3   4   5   5   6   6   6   6   7   9   9  
 LCS     331       K     5    8    8       E        0   1   1   1   2   2   2   3   3   3   4   5   5   6   6   6   6   7   9   9  
 LCS     332       D     3    8    8       E        0   0   0   1   2   2   2   3   3   3   4   5   5   6   6   6   6   7   9   9  
 LCS     333       V     3    8    8       E        0   0   0   1   2   2   2   3   3   3   4   5   5   6   6   6   6   7   9   9  
 LCS     334       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     335       S     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     336       E     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     337       T     3    8    8       C        0   0   0   1   2   2   2   2   2   2   3   3   4   4   5   5   6   7   9   9  
 LCS     338       K     4    8    8       C        0   0   1   1   2   2   2   2   2   2   3   3   3   4   5   5   5   6   8   9  
 LCS     339       G     4    8    8       C        0   1   1   1   1   2   2   2   2   2   3   3   4   5   6   7   7   8   9   9  
 LCS     340       V     4    8    8       E        0   1   1   1   2   2   2   2   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     341       V     4    8    8       E        0   1   1   2   2   2   3   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     342       V     4    8    8       E        0   1   1   1   2   2   2   2   2   3   4   4   5   7   7   8   8   9   9  10  
 LCS     343       L     4    8    8       E        0   1   1   1   2   2   2   2   2   2   3   3   4   4   4   4   5   6   7   8  
 LCS     344       N     4    8    8       E        0   1   1   1   2   2   2   2   2   2   3   3   4   4   4   4   5   6   6   6  
 LCS     345       G     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     346       E     0    0    0       C        0   0   0   0   2   2   2   2   2   2   3   3   4   4   4   4   5   6   6   6  
 LCS     347       N     0    0    0       C        0   0   0   0   0   1   2   2   2   2   2   2   4   4   4   4   5   6   6   6  
 LCS     348       A     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     349       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     350       K     0    0    0       C        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     351       P     0    0    0       C        0   0   0   0   0   2   2   2   2   2   2   2   4   4   4   4   5   6   6   6  
 LCS     352       I     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     353       E     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     354       V     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     355       T     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     356       M     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     357       K     0    0    0       E        0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0   0  
 LCS     358       N     5    7   10       E        0   1   1   1   1   1   2   2   3   3   4   5   6   7   7   7   8   9   9  10  
 LCS     359       V     5    7   10       E        1   1   1   2   2   2   3   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     360       K     5    7   10       E        1   1   1   2   2   2   2   3   4   5   5   6   6   7   7   8   8   9   9  10  
 LCS     361       L     5    7   10       C        1   1   1   1   1   1   2   2   2   3   3   4   5   6   7   8   8   9   9  10  
 LCS     362       T     5    7   10       C        1   1   1   1   1   1   2   2   2   2   2   2   3   3   3   6   7   8   9   9  
 LCS     363       S     3    7   10       C        0   0   1   1   1   1   1   2   2   2   2   2   3   3   3   3   4   4   4   9  
 LCS     364       D     4    7   10       C        0   1   1   1   1   1   2   2   2   2   2   2   3   3   3   3   4   4   4   4  
 LCS     365       S     4    5   10       C        0   1   1   1   1   1   1   1   2   2   2   2   3   3   3   3   4   4   4   4  
 LCS     366       T     4    5   10       E        0   1   1   1   1   1   1   1   2   2   2   2   3   3   5   5   5   6   7   9  
 LCS     367       W     4    5   10       E        0   1   1   1   1   1   1   1   2   2   3   4   4   4   5   5   5   6   7   8  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.26 
 
 NUMBER_OF_CA_Tg:  376      NUMBER_OF_CA_Pr:   86      PERCENT_OF_CA:  22.87  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       5       6       7       8      10      10      12      15      16      20      21      24      26      27      29      31      33      35      37      39  
 GDT PERCENT_OF_CA_Pr    5.81    6.98    8.14    9.30   11.63   11.63   13.95   17.44   18.60   23.26   24.42   27.91   30.23   31.40   33.72   36.05   38.37   40.70   43.02   45.35 
 GDT PERCENT_OF_CA_Tg    1.33    1.60    1.86    2.13    2.66    2.66    3.19    3.99    4.26    5.32    5.59    6.38    6.91    7.18    7.71    8.24    8.78    9.31    9.84   10.37 
 GDT FRAGMENT: Beg-End 263-267 263-268 278-284 297-359 294-359 294-359 281-359 281-360 294-360 281-360 281-360 281-360 281-360 280-360 281-360 281-361 281-361 281-361 280-361 280-361 
 GDT RMS_LOCAL           0.31    0.64    1.05    1.35    1.69    1.69    2.53    3.31    3.42    4.01    4.09    4.57    4.77    4.88    5.24    5.68    5.93    6.17    6.41    6.66 
 GDT RMS_ALL_CA         25.89   25.80   19.49   18.81   18.69   18.69   17.90   17.62   17.67   17.37   17.41   17.31   17.43   17.38   17.37   17.09   17.11   17.26   17.18   17.27 
 
 
 TEST (CA)  RMS =  15.83               (Number of atoms:   86) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .   15.83         86    22.9   376     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1840                            CRMSCA  
     SECONDARY STRUCTURE . .   13.59         54    28.7   188     CRMSCA  
     SURFACE . . . . . . . .   18.19         42    23.5   179     CRMSCA  
     BURIED  . . . . . . . .   13.18         44    22.3   197     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .   15.75        344    18.6  1849     CRMSMC  
     SECONDARY STRUCTURE . .   13.63        216    23.1   935     CRMSMC  
     SURFACE . . . . . . . .   17.95        168    18.9   887     CRMSMC  
     BURIED  . . . . . . . .   13.32        176    18.3   962     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0  1308     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0  1108     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   715     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   679     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   629     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .   15.75        344    12.2  2812     CRMSALL 
     SECONDARY STRUCTURE . .   13.63        216    14.7  1467     CRMSALL 
     SURFACE . . . . . . . .   17.95        168    12.0  1395     CRMSALL 
     BURIED  . . . . . . . .   13.32        176    12.4  1417     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.130      1.000       0.500     86    22.9   376     ERRCA  
     SECONDARY STRUCTURE . .   12.336      1.000       0.500     54    28.7   188     ERRCA  
     SURFACE . . . . . . . .   16.552      1.000       0.500     42    23.5   179     ERRCA  
     BURIED  . . . . . . . .   11.819      1.000       0.500     44    22.3   197     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.098      1.000       0.500    344    18.6  1849     ERRMC  
     SECONDARY STRUCTURE . .   12.383      1.000       0.500    216    23.1   935     ERRMC  
     SURFACE . . . . . . . .   16.339      1.000       0.500    168    18.9   887     ERRMC  
     BURIED  . . . . . . . .   11.959      1.000       0.500    176    18.3   962     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0  1308     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0  1108     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   715     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   679     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   629     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .   14.098      1.000       0.500    344    12.2  2812     ERRALL 
     SECONDARY STRUCTURE . .   12.383      1.000       0.500    216    14.7  1467     ERRALL 
     SURFACE . . . . . . . .   16.339      1.000       0.500    168    12.0  1395     ERRALL 
     BURIED  . . . . . . . .   11.959      1.000       0.500    176    12.4  1417     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         1         1         2         4        28      86     376   DISTCA 
CA  (P)      0.27      0.27      0.53      1.06      7.45             376   DISTCA 
CA  (RMS)    0.89      0.89      2.11      3.15      7.43                   DISTCA 
 
ALL (N)         1         3         6        15       119     344    2812   DISTALL 
ALL (P)      0.04      0.11      0.21      0.53      4.23            2812   DISTALL 
ALL (RMS)    0.89      1.26      2.06      3.49      7.51                   DISTALL 
 
 
 
 
END of the results output 
