 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 19 , MODEL 19 , TARGET 185 
#          The number of residues possible to evaluate: 19 
 
 
 SECONDARY STRUCTURE PREDICTION: 
       NUM    RES   SS   Prediction   Probability 
 SSP   132     K     C     C             1.00 
 SSP   133     C     C     C             1.00 
 SSP   134     D     C     C             1.00 
 SSP   135     E     C     C             1.00 
 SSP   136     P     C     C             1.00 
 SSP   137     I     C     C             1.00 
 SSP   138     L     E     C             1.00 
 SSP   139     S     C     C             1.00 
 SSP   140     N     C     C             1.00 
 SSP   141     R     C     C             1.00 
 SSP   142     S     E     C             1.00 
 SSP   143     G     C     C             1.00 
 SSP   144     D     C     C             1.00 
 SSP   145     H     C     C             1.00 
 SSP   146     R     C     C             1.00 
 SSP   147     G     C     C             1.00 
 SSP   148     K     C     C             1.00 
 SSP   149     F     C     C             1.00 
 SSP   150     K     C     C             1.00 
 SSP  BREAK 
 
 NP      - Number of predicted residues 
 PP      - Percent of predicted residues 
 Q3      - Residues predicted correctly (H, E, C) 
 Qhelix  - Residues predicted correctly (HELIX) 
 Qstrand - Residues predicted correctly (STRAND) 
 Qcoil   - Residues predicted correctly (COIL) 
 SOV     - Segment overlap quantity 
 
                     Q3      Qhelix   Qstrand   Qcoil      PP 
 Qindex              89.5       0.0      0.0    100.0     10.3 
 
                     ALL      HELIX    STRAND    COIL      PP 
 SOV observed        44.9     100.0      0.0     50.2     10.3 
 
           Considered    Percent predicted   Percent predicted 
            segments        correctly         as wrong type 
 SEG            0               0.0               0.0 
 
         Number of wrong    Number of wrong 
             breaks             joins 
 B/J            0                 0 
 
  CONFIDENCE (P)     Average     NP    PP/BIN     Q3 
 BIN  0.90 - 1.00      1.00      19    100.0     89.5 
 
 BIN  0.00 - 1.00      1.00      19    100.0     89.5 
 
 
 
 
              predicted        number of target      total number   total number 
                as a         contacts possible in         of             of 
               contact         predicted subset:       contacts       contacts 
            percent  number    percent    number       in target    in prediction 
 CONTACTS:     0.0      0         0.0        0             0              0 
 
 
# WARNING! The number of residues with CB atom coordinates: MODEL 0 , TARGET 170 
 
# WARNING! TARGET 1470 atoms, MODEL 1411 atoms, 1394 common with TARGET 
           Number of atoms possible to evaluate: 76 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .    86.09           38.9    36     9.8   368     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   118     ARMSMC  
     SURFACE . . . . . . . .    86.98           38.5    26    13.8   188     ARMSMC  
     BURIED  . . . . . . . .    83.73           40.0    10     5.6   180     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   162     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0   146     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    55     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    83     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    79     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   120     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    91     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    36     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    63     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    57     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    40     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    33     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    11     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    33     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     7     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    23     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    23     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     6     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    20     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1  132 - 150  19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    18    132 - 149      4.88     5.17 
  LCS LOCAL_SCORE:             93.63 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1  132 - 150  19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     8    132 - 139      1.74    12.53 
  LONGEST_CONTINUOUS_SEGMENT     8    133 - 140      1.99    13.36 
  LONGEST_CONTINUOUS_SEGMENT     8    134 - 141      1.85     7.30 
  LCS LOCAL_SCORE:             36.01 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1  132 - 150  19   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT     5    132 - 136      0.85    13.48 
  LONGEST_CONTINUOUS_SEGMENT     5    135 - 139      0.87     7.69 
  LONGEST_CONTINUOUS_SEGMENT     5    136 - 140      0.47     9.37 
  LCS LOCAL_SCORE:             22.99 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS     132       K     5    8   18       C        1   2   3   3   3   4   4   5   6   7   8   8   9   9   9   9   9  10  10  10  
 LCS     133       C     5    8   18       C        2   2   3   3   3   4   4   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     134       D     5    8   18       C        2   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     135       E     5    8   18       C        2   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     136       P     5    8   18       C        2   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     137       I     5    8   18       C        2   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     138       L     5    8   18       E        2   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     139       S     5    8   18       C        2   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     140       N     5    8   18       C        1   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     141       R     4    8   18       C        2   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     142       S     4    6   18       E        1   1   2   2   3   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     143       G     4    6   18       C        1   1   2   2   3   3   5   5   6   7   8   8   9   9   9   9   9  10  10  10  
 LCS     144       D     4    6   18       C        0   1   2   2   2   3   4   4   5   5   5   6   7   7   8   8   9  10  10  10  
 LCS     145       H     3    6   18       C        1   1   1   2   2   3   4   4   5   5   5   6   7   8   9   9   9  10  10  10  
 LCS     146       R     3    6   18       C        1   1   1   2   2   3   3   4   5   7   8   8   9   9   9   9   9  10  10  10  
 LCS     147       G     4    6   18       C        1   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     148       K     4    6   18       C        1   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     149       F     4    4   18       C        1   2   3   3   4   4   5   5   7   7   8   8   9   9   9   9   9  10  10  10  
 LCS     150       K     4    4   14       C        1   2   2   2   3   3   4   4   5   6   8   8   9   9   9   9   9  10  10  10  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   0.24 
 
 NUMBER_OF_CA_Tg:  185      NUMBER_OF_CA_Pr:   19      PERCENT_OF_CA:  10.27  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       4       5       7       7       9       9      10      11      13      13      15      16      17      17      17      17      18      19      19      19  
 GDT PERCENT_OF_CA_Pr   21.05   26.32   36.84   36.84   47.37   47.37   52.63   57.89   68.42   68.42   78.95   84.21   89.47   89.47   89.47   89.47   94.74  100.00  100.00  100.00 
 GDT PERCENT_OF_CA_Tg    2.16    2.70    3.78    3.78    4.86    4.86    5.41    5.95    7.03    7.03    8.11    8.65    9.19    9.19    9.19    9.19    9.73   10.27   10.27   10.27 
 GDT FRAGMENT: Beg-End 133-141 136-140 132-141 132-141 134-148 134-148 134-149 134-149 133-149 133-149 132-150 132-149 132-150 132-150 132-150 132-150 132-150 132-150 132-150 132-150 
 GDT RMS_LOCAL           0.08    0.47    0.99    0.99    1.63    1.63    2.01    2.40    3.14    3.14    3.73    3.94    4.16    4.16    4.16    4.16    4.65    5.07    5.07    5.07 
 GDT RMS_ALL_CA         11.65    9.37   11.49   11.49    6.76    6.76    6.81    6.59    5.76    5.76    5.60    5.25    5.26    5.26    5.26    5.26    5.13    5.07    5.07    5.07 
 
 
 TEST (CA)  RMS =   5.07               (Number of atoms:   19) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    5.07         19    10.3   185     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2671                            CRMSCA  
     SECONDARY STRUCTURE . .    0.00          0     0.0    59     CRMSCA  
     SURFACE . . . . . . . .    5.31         14    14.7    95     CRMSCA  
     BURIED  . . . . . . . .    4.36          5     5.6    90     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    5.12         76     8.4   910     CRMSMC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   294     CRMSMC  
     SURFACE . . . . . . . .    5.32         56    12.0   466     CRMSMC  
     BURIED  . . . . . . . .    4.51         20     4.5   444     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    0.00          0     0.0   730     CRMSSC  
     RELIABLE SIDE CHAINS  .    0.00          0     0.0   614     CRMSSC  
     SECONDARY STRUCTURE . .    0.00          0     0.0   262     CRMSSC  
     SURFACE . . . . . . . .    0.00          0     0.0   361     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0   369     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    5.12         76     5.2  1470     CRMSALL 
     SECONDARY STRUCTURE . .    0.00          0     0.0   498     CRMSALL 
     SURFACE . . . . . . . .    5.32         56     7.6   741     CRMSALL 
     BURIED  . . . . . . . .    4.51         20     2.7   729     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.572      1.000       0.500     19    10.3   185     ERRCA  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0    59     ERRCA  
     SURFACE . . . . . . . .    4.787      1.000       0.500     14    14.7    95     ERRCA  
     BURIED  . . . . . . . .    3.970      1.000       0.500      5     5.6    90     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.585      1.000       0.500     76     8.4   910     ERRMC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   294     ERRMC  
     SURFACE . . . . . . . .    4.775      1.000       0.500     56    12.0   466     ERRMC  
     BURIED  . . . . . . . .    4.053      1.000       0.500     20     4.5   444     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    0.000      0.000       0.000      0     0.0   730     ERRSC  
     RELIABLE SIDE CHAINS  .    0.000      0.000       0.000      0     0.0   614     ERRSC  
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   262     ERRSC  
     SURFACE . . . . . . . .    0.000      0.000       0.000      0     0.0   361     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   369     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.585      1.000       0.500     76     5.2  1470     ERRALL 
     SECONDARY STRUCTURE . .    0.000      0.000       0.000      0     0.0   498     ERRALL 
     SURFACE . . . . . . . .    4.775      1.000       0.500     56     7.6   741     ERRALL 
     BURIED  . . . . . . . .    4.053      1.000       0.500     20     2.7   729     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         2         6        11        19      19     185   DISTCA 
CA  (P)      0.00      1.08      3.24      5.95     10.27             185   DISTCA 
CA  (RMS)    0.00      1.60      2.19      3.21      5.07                   DISTCA 
 
ALL (N)         0         8        23        48        75      76    1470   DISTALL 
ALL (P)      0.00      0.54      1.56      3.27      5.10            1470   DISTALL 
ALL (RMS)    0.00      1.50      2.25      3.31      5.01                   DISTALL 
 
 
 
 
END of the results output 
