 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 0 0 , MODEL 0 , TARGET 31 
 
# WARNING! TARGET 263 atoms, MODEL 111 atoms, 62 common with TARGET 
           Number of atoms possible to evaluate: 62 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    60     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    44     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    56     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     4     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    29     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    27     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    21     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     1     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    26     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    19     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    19     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    25     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     1     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    11     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    11     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0     3     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     3     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     0     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1    9 - 39   31   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    29     10 - 38       4.86     5.27 
  LONGEST_CONTINUOUS_SEGMENT    29     11 - 39       4.74     5.47 
  LCS LOCAL_SCORE:             93.34 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1    9 - 39   31   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    16     11 - 26       1.71    12.14 
  LONGEST_CONTINUOUS_SEGMENT    16     12 - 27       1.65     9.64 
  LCS LOCAL_SCORE:             38.61 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1    9 - 39   31   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    11     12 - 22       0.88     9.54 
  LCS LOCAL_SCORE:             25.49 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS       9       F     3    3   27       -        0   9   9   9   9  19  19  51  58  61  61  61  83  87  90  93  93  96  96 100  
 LCS      10       E     3    3   29       -        3   9  25  25  29  35  38  51  58  61  61  61  83  87  90  93  93  96  96 100  
 LCS      11       L     3   16   29       -        9   9   9  29  29  45  51  54  58  61  64  64  83  87  90  93  93  96  96 100  
 LCS      12       D    11   16   29       -       22  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      13       Q    11   16   29       -       22  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      14       E    11   16   29       -       22  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      15       W    11   16   29       -       22  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      16       V    11   16   29       -       22  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      17       E    11   16   29       -       22  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      18       L    11   16   29       -       22  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      19       M    11   16   29       -       19  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      20       V    11   16   29       -       19  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      21       E    11   16   29       -       19  25  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      22       A    11   16   29       -       19  25  35  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      23       K     8   16   29       -       19  25  41  48  48  48  51  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      24       E     8   16   29       -       19  25  41  48  48  48  51  54  58  64  74  80  83  87  90  93  93  96  96 100  
 LCS      25       A     8   16   29       -       19  32  41  48  48  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      26       N     8   16   29       -       19  32  41  48  48  48  51  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      27       I     3   16   29       -        9   9  32  38  41  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      28       S     4    4   29       -        9  12  16  25  32  45  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      29       P     4    4   29       -        9  12  12  12  12  16  22  29  48  54  58  64  74  77  87  90  90  90  90 100  
 LCS      30       E     4    4   29       -        9  12  12  12  12  22  38  48  54  58  70  77  83  87  87  90  93  96  96 100  
 LCS      31       E     4    9   29       -        9  12  16  25  32  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      32       I     8    9   29       -       22  25  25  25  25  29  35  45  54  67  77  80  83  87  90  93  93  96  96 100  
 LCS      33       R     8    9   29       -       22  25  25  25  29  32  41  48  61  67  77  80  83  87  90  93  93  96  96 100  
 LCS      34       K     8    9   29       -       22  25  25  25  29  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      35       Y     8    9   29       -       22  25  25  25  38  48  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      36       L     8    9   29       -       22  25  25  25  29  32  41  58  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      37       L     8    9   29       -       22  25  25  25  32  45  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      38       L     8    9   29       -       22  25  25  25  38  45  54  61  70  70  77  80  83  87  90  93  93  96  96 100  
 LCS      39       N     8    9   29       -       19  25  25  25  29  32  41  45  51  54  61  67  80  87  87  93  93  96  96 100  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):  25.49 
 
 NUMBER_OF_CA_Tg:   31      NUMBER_OF_CA_Pr:   31      PERCENT_OF_CA: 100.00  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max       7      10      13      15      15      15      17      19      22      22      24      25      26      27      28      29      29      30      30      31  
 GDT PERCENT_OF_CA_Pr   22.58   32.26   41.94   48.39   48.39   48.39   54.84   61.29   70.97   70.97   77.42   80.65   83.87   87.10   90.32   93.55   93.55   96.77   96.77  100.00 
 GDT PERCENT_OF_CA_Tg   22.58   32.26   41.94   48.39   48.39   48.39   54.84   61.29   70.97   70.97   77.42   80.65   83.87   87.10   90.32   93.55   93.55   96.77   96.77  100.00 
 GDT FRAGMENT: Beg-End  32-38   12-25   12-26   12-26   12-26   12-26   12-38   12-38   12-38   12-38   12-38   12-38   12-38   12-39    9-38    9-39    9-39    9-39    9-39    9-39  
 GDT RMS_LOCAL           0.18    0.57    1.01    1.21    1.21    1.21    2.51    2.71    3.07    3.07    3.45    3.56    3.84    4.06    4.45    4.65    4.65    4.93    4.93    5.21 
 GDT RMS_ALL_CA         17.21    8.94   10.55   11.08   11.08   11.08    5.55    5.50    5.52    5.52    5.58    5.61    5.69    5.75    5.31    5.31    5.31    5.23    5.23    5.21 
 
 
 TEST (CA)  RMS =   5.21               (Number of atoms:   31) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    5.21         31   100.0    31     CRMSCA  
     CRN = ALL/NP  . . . . .    0.1680                            CRMSCA  
     SECONDARY STRUCTURE . .    4.95         22   100.0    22     CRMSCA  
     SURFACE . . . . . . . .    5.23         29   100.0    29     CRMSCA  
     BURIED  . . . . . . . .    4.94          2   100.0     2     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    5.72         62    40.0   155     CRMSMC  
     SECONDARY STRUCTURE . .    5.51         44    40.0   110     CRMSMC  
     SURFACE . . . . . . . .    5.73         58    40.0   145     CRMSMC  
     BURIED  . . . . . . . .    5.63          4    40.0    10     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .    6.19         31    22.3   139     CRMSSC  
     RELIABLE SIDE CHAINS  .    6.19         31    26.1   119     CRMSSC  
     SECONDARY STRUCTURE . .    6.02         22    21.2   104     CRMSSC  
     SURFACE . . . . . . . .    6.18         29    21.6   134     CRMSSC  
     BURIED  . . . . . . . .    6.25          2    40.0     5     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    5.72         62    23.6   263     CRMSALL 
     SECONDARY STRUCTURE . .    5.51         44    22.9   192     CRMSALL 
     SURFACE . . . . . . . .    5.73         58    23.2   250     CRMSALL 
     BURIED  . . . . . . . .    5.63          4    30.8    13     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    3.627      0.571       0.286     31   100.0    31     ERRCA  
     SECONDARY STRUCTURE . .    3.417      0.567       0.283     22   100.0    22     ERRCA  
     SURFACE . . . . . . . .    3.629      0.569       0.285     29   100.0    29     ERRCA  
     BURIED  . . . . . . . .    3.601      0.602       0.301      2   100.0     2     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.129      0.609       0.305     62    40.0   155     ERRMC  
     SECONDARY STRUCTURE . .    3.933      0.601       0.301     44    40.0   110     ERRMC  
     SURFACE . . . . . . . .    4.114      0.606       0.303     58    40.0   145     ERRMC  
     BURIED  . . . . . . . .    4.347      0.654       0.327      4    40.0    10     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.630      0.647       0.323     31    22.3   139     ERRSC  
     RELIABLE SIDE CHAINS  .    4.630      0.647       0.323     31    26.1   119     ERRSC  
     SECONDARY STRUCTURE . .    4.448      0.636       0.318     22    21.2   104     ERRSC  
     SURFACE . . . . . . . .    4.598      0.643       0.321     29    21.6   134     ERRSC  
     BURIED  . . . . . . . .    5.093      0.707       0.354      2    40.0     5     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    4.129      0.609       0.305     62    23.6   263     ERRALL 
     SECONDARY STRUCTURE . .    3.933      0.601       0.301     44    22.9   192     ERRALL 
     SURFACE . . . . . . . .    4.114      0.606       0.303     58    23.2   250     ERRALL 
     BURIED  . . . . . . . .    4.347      0.654       0.327      4    30.8    13     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         4         8        20        30      31      31   DISTCA 
CA  (P)      0.00     12.90     25.81     64.52     96.77              31   DISTCA 
CA  (RMS)    0.00      1.44      2.08      3.26      4.95                   DISTCA 
 
ALL (N)         0         5        15        35        60      62     263   DISTALL 
ALL (P)      0.00      1.90      5.70     13.31     22.81             263   DISTALL 
ALL (RMS)    0.00      1.47      2.31      3.39      5.43                   DISTALL 
 
 
 
 
END of the results output 
