 
####################################################### 
#                                                     # 
#                        ACE                          # 
#                                                     # 
#        Ab-initio protein structure prediction       # 
#                         &                           # 
#               Comparative modeling                  # 
#                                                     # 
#                     Evaluator                       # 
#                                                     # 
#                ----------------- 11/1998            # 
#                                                     # 
#                         by                          # 
#           Adam Zemla & Ceslovas Venclovas           # 
#                                                     # 
#         Protein Structure Prediction Center         # 
#      Lawrence Livermore National Laboratory, CA     # 
#                                                     # 
####################################################### 
########################## 
#                        # 
#    ACE parameters:     # 
#                        # 
########################## 
# 
# MEASURES: 
# 
# For AB: 0 3 9 13 14 
# For CM: 0 1 2 3 6 7 8 9 10 11 12 13 14 18 
# 
ARMSMC  0 1 2     7 8 9    11 12 13 14 18 
ARMSSC  0 1 2 3 6 7 8 9    11 12 13 14 18 
# 
CRMSCA  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSMC  0 1 2     7 8 9 10 11 12 13 14 18 
CRMSSC  0 1 2 3 6     9    11 12 13 14 18 
CRMSALL 0 1 2     7 8 9    11 12 13 14 18 
# 
D-E_CA  0 1 2     7 8 9    11 12 13 14 18 
D-E_MC  0 1 2     7 8 9    11 12 13 14 18 
D-E_SC  0 1 2 3 6 7 8 9    11 12 13 14 18 
D-E_ALL 0 1 2     7 8 9    11 12 13 14 18 
# 
# Output parameters 
# 
DIHED-OUTPUT        0         #    1 - ON, 0 - OFF 
RES-CONTACTS        0         #    1 - ON, 0 - OFF 
SS-OUTPUT           1         #    1 - ON, 0 - OFF 
PHI-PSI             0         #    1 - SEPARATELY, 0 - NO  
# 
# Calculation parameters 
# 
SOV-METHOD          1         #    0 - SOV 94,  1 - SOV 
# 
TEMP-FACTOR         30.0      #    Target structure temperature factor cutoff 
ACCESS-CUTOFF       0.20      #    Solvent accessibility cutoff   
ANGLES-CORRECT      30.0      #    target-model  (diff < 30.0)    
DSSP-HELIX          6         #    Secondary Structure subset: helix cutoff  
DSSP-STRAND         3         #    Secondary Structure subset: strand cutoff 
ROTAMERS-LIMIT      30.0      #    target-parent (diff > 30.0) 
ROTATION-MATRIX     0         #    1 - ON, 0 - OFF   
SC-SWAPPING         1         #    1 - ON, 0 - OFF    
SEP-CONTACTS        1         #    Separation interval along the chain 
RESIDUE-CONTACTS    8.0       #    Contact definition between two C-beta atoms 
# 
CRMS-METHOD         1         #    0 - ALL, 1 - CA, 2 - MC+CB, 3 - CA (iter)  
ITER-CUTOFF         2.5       #    DISTANCE cutoff (for CA (iter))  
LCS_GDT             1         #    LCS and GDT calculations (1 - ON, 0 - OFF) 
########################## 
#                        # 
#      ACE results:      # 
#                        # 
########################## 
 
 
 
# WARNING! The number of residues in SS section: 0 0 , MODEL 0 , TARGET 103 
 
# WARNING! TARGET 845 atoms, MODEL 603 atoms, 589 common with TARGET 
           Number of atoms possible to evaluate: 74 
 
MEASURES: 
 
 
ANGLES RMS : model <-> target 
 
 (MC: PHI+PSI) DIHED RMS:      ARMSMC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0   201     ARMSMC  
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0   127     ARMSMC  
     SURFACE . . . . . . . .     0.00            0.0     0     0.0   151     ARMSMC  
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    50     ARMSMC  
 (SC: CHI1) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    91     ARMSSC1 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    84     ARMSSC1 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    57     ARMSSC1 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    69     ARMSSC1 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    22     ARMSSC1 
 (SC: CHI2) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    64     ARMSSC2 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    49     ARMSSC2 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    42     ARMSSC2 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    49     ARMSSC2 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0    15     ARMSSC2 
 (SC: CHI3) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    31     ARMSSC3 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    26     ARMSSC3 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0    23     ARMSSC3 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    28     ARMSSC3 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     3     ARMSSC3 
 (SC: CHI4) DIHED RMS:         ARMSSC            PC     NP     PP     TN 
     ALL . . . . . . . . . .     0.00            0.0     0     0.0    12     ARMSSC4 
     RELIABLE SIDE CHAINS  .     0.00            0.0     0     0.0    12     ARMSSC4 
     SECONDARY STRUCTURE . .     0.00            0.0     0     0.0     9     ARMSSC4 
     SURFACE . . . . . . . .     0.00            0.0     0     0.0    10     ARMSSC4 
     BURIED  . . . . . . . .     0.00            0.0     0     0.0     2     ARMSSC4 
 
COORDINATES RMS : model <-> target 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   5.00): 
 FRAGMENT  1   66 - 108  38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    28     74 - 101      4.90    11.85 
  LCS LOCAL_SCORE:             78.05 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   2.00): 
 FRAGMENT  1   66 - 108  38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    19     74 - 92       1.81    12.64 
  LCS LOCAL_SCORE:             42.45 
 
 
LONGEST_CONTINUOUS_SEGMENT (Longest continuous sequence under CA RMS cutoff   1.00): 
 FRAGMENT  1   66 - 108  38   Length     Seq        L_RMS   ALL_CA_RMS 
  LONGEST_CONTINUOUS_SEGMENT    14     75 - 88       0.92    12.09 
  LONGEST_CONTINUOUS_SEGMENT    14     76 - 89       0.86    12.00 
  LCS LOCAL_SCORE:             26.73 
 
 
 LCS                   LENGTH_OF_THE 
 LCS  RESIDUE  RESIDUE    CONTINUOUS  SECONDARY 
 LCS   NUMBER     NAME       SEGMENT  STRUCTURE   GDT_DATA_COLUMNS (PERCENT OF THE TARGET) 
 LCS      66       H     3    3   11       -        0   2   2   2   3   3   4   4   5   6  11  11  14  16  18  18  20  23  24  25  
 LCS      67       E     3    3   14       -        0   2   2   2   3   3   4   4   6   9  11  12  15  16  18  18  18  22  24  25  
 LCS      68       T     3    3   25       -        0   2   2   2   2   3   3   4   4   4   5   5  15  16  18  19  21  23  24  25  
 LCS    BREAK 
 LCS      74       L     3   19   28       -        0   9  11  14  15  18  20  21  22  22  22  22  23  25  26  26  27  27  29  30  
 LCS      75       D    14   19   28       -        2   7  10  14  15  16  20  21  22  22  22  22  23  25  26  26  27  29  30  31  
 LCS      76       S    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  27  28  30  31  
 LCS      77       E    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      78       W    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      79       E    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      80       K    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      81       L    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      82       V    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      83       R    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      84       D    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      85       A    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      86       M    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      87       T    14   19   28       -        7  12  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      88       S    14   19   28       -        6  12  12  14  15  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      89       G    14   19   28       -        2   8  11  14  15  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      90       V     6   19   28       -        4   4   5   5   7  16  17  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      91       S     6   19   28       -        4   8  12  14  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      92       K     6   19   28       -        4   4  10  13  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      93       K     6   18   28       -        4   4   5  12  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      94       Q     6   14   28       -        4   4   5   8  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      95       F     6   14   28       -        3   4   5  10  16  18  20  21  22  22  22  22  23  25  26  26  28  29  30  31  
 LCS      96       R     4   14   28       -        2   2   3  10  11  15  19  21  22  22  22  22  23  24  26  26  27  27  28  30  
 LCS      97       E    11   14   28       -        9   9  10  10  11  12  13  14  16  18  19  20  23  25  26  26  28  29  30  31  
 LCS      98       F    11   14   28       -        9   9  10  10  11  12  13  14  16  18  19  21  23  25  26  26  28  29  30  31  
 LCS      99       L    11   14   28       -        9   9  10  10  11  12  16  18  18  21  22  22  23  25  26  26  28  29  30  31  
 LCS     100       D    11   14   28       -        9   9  10  10  11  12  13  14  16  18  19  21  23  25  26  26  28  29  30  31  
 LCS     101       Y    11   14   28       -        9   9  10  10  11  12  13  14  16  18  19  20  21  22  24  25  28  29  30  31  
 LCS     102       Q    11   14   24       -        9   9  10  10  11  12  13  14  16  18  19  20  21  22  25  26  28  29  30  31  
 LCS     103       K    11   14   24       -        9   9  10  10  11  12  13  14  16  18  19  20  23  24  25  26  28  29  30  31  
 LCS     104       W    11   14   24       -        9   9  10  10  11  12  13  14  16  18  19  20  21  22  24  25  28  29  30  31  
 LCS     105       R    11   14   24       -        9   9  10  10  11  12  13  14  16  18  19  20  20  21  22  23  24  26  27  28  
 LCS     106       K    11   14   24       -        9   9  10  10  11  12  13  14  16  18  19  20  21  22  24  25  28  29  30  31  
 LCS     107       S    11   14   24       -        0   6  10  10  11  12  13  14  16  18  19  20  21  22  24  25  28  29  30  31  
 LCS     108       Q     3   14   24       -        0   2   6   8  10  12  13  14  16  18  19  20  21  22  24  25  25  28  28  31  
 LCS TOTAL_SCORE (RMS CUTOFF   1.00):   3.64 
 
 NUMBER_OF_CA_Tg:  103      NUMBER_OF_CA_Pr:   38      PERCENT_OF_CA:  36.89  
 
GLOBAL_DISTANCE_TEST (the largest set of residues under DISTANCE_CUTOFF (using LCS results)): 
 GDT DISTANCE_CUTOFF     0.50    1.00    1.50    2.00    2.50    3.00    3.50    4.00    4.50    5.00    5.50    6.00    6.50    7.00    7.50    8.00    8.50    9.00    9.50   10.00  
 GDT NUMBER_OF_CA_max      10      13      13      15      17      19      21      22      23      23      23      23      24      26      27      27      29      30      31      32  
 GDT PERCENT_OF_CA_Pr   26.32   34.21   34.21   39.47   44.74   50.00   55.26   57.89   60.53   60.53   60.53   60.53   63.16   68.42   71.05   71.05   76.32   78.95   81.58   84.21 
 GDT PERCENT_OF_CA_Tg    9.71   12.62   12.62   14.56   16.50   18.45   20.39   21.36   22.33   22.33   22.33   22.33   23.30   25.24   26.21   26.21   28.16   29.13   30.10   31.07 
 GDT FRAGMENT: Beg-End  97-106  76-88   76-88   74-89   76-95   74-95   74-95   74-96   74-96   74-96   74-96   74-96   74-99   74-100  74-100  74-100  77-107  75-107  75-107  75-108 
 GDT RMS_LOCAL           0.27    0.69    0.69    0.98    1.66    1.87    2.12    2.29    2.44    2.44    2.44    2.44    3.04    4.03    4.16    4.16    6.30    6.37    6.42    6.66 
 GDT RMS_ALL_CA         19.73   12.18   12.18   12.05   14.04   13.81   13.62   13.78   13.72   13.72   13.72   13.72   13.12   12.10   12.26   12.26   11.38   11.21   11.08   11.13 
 
 
 TEST (CA)  RMS =   9.39               (Number of atoms:   38) 
 
 (CA)  RMS:                   CRMSCA         NP     PP     TN 
     ALL . . . . . . . . . .    9.39         38    36.9   103     CRMSCA  
     CRN = ALL/NP  . . . . .    0.2470                            CRMSCA  
     SECONDARY STRUCTURE . .    8.78         28    43.1    65     CRMSCA  
     SURFACE . . . . . . . .    9.39         38    48.7    78     CRMSCA  
     BURIED  . . . . . . . .    0.00          0     0.0    25     CRMSCA  
 (MC)  RMS:                   CRMSMC         NP     PP     TN 
     ALL . . . . . . . . . .    9.76         74    14.5   511     CRMSMC  
     SECONDARY STRUCTURE . .    9.15         56    17.3   324     CRMSMC  
     SURFACE . . . . . . . .    9.76         74    19.1   387     CRMSMC  
     BURIED  . . . . . . . .    0.00          0     0.0   124     CRMSMC  
 (SC)  RMS:                   CRMSSC         NP     PP     TN 
     ALL . . . . . . . . . .   10.13         36     8.3   433     CRMSSC  
     RELIABLE SIDE CHAINS  .   10.13         36     9.7   371     CRMSSC  
     SECONDARY STRUCTURE . .    9.50         28     9.4   297     CRMSSC  
     SURFACE . . . . . . . .   10.13         36    10.5   344     CRMSSC  
     BURIED  . . . . . . . .    0.00          0     0.0    89     CRMSSC  
 (ALL) RMS:                   CRMSALL        NP     PP     TN 
     ALL . . . . . . . . . .    9.76         74     8.8   845     CRMSALL 
     SECONDARY STRUCTURE . .    9.15         56    10.1   557     CRMSALL 
     SURFACE . . . . . . . .    9.76         74    11.3   656     CRMSALL 
     BURIED  . . . . . . . .    0.00          0     0.0   189     CRMSALL 
 
Accuracy of estimates of atomic coordinate errors: model <-> target 
 
 (CA)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.645      0.753       0.376     38    36.9   103     ERRCA  
     SECONDARY STRUCTURE . .    7.312      0.761       0.381     28    43.1    65     ERRCA  
     SURFACE . . . . . . . .    7.645      0.753       0.376     38    48.7    78     ERRCA  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0    25     ERRCA  
 (MC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.973      0.758       0.379     74    14.5   511     ERRMC  
     SECONDARY STRUCTURE . .    7.630      0.766       0.383     56    17.3   324     ERRMC  
     SURFACE . . . . . . . .    7.973      0.758       0.379     74    19.1   387     ERRMC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   124     ERRMC  
 (SC)  ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    8.320      0.764       0.382     36     8.3   433     ERRSC  
     RELIABLE SIDE CHAINS  .    8.320      0.764       0.382     36     9.7   371     ERRSC  
     SECONDARY STRUCTURE . .    7.948      0.772       0.386     28     9.4   297     ERRSC  
     SURFACE . . . . . . . .    8.320      0.764       0.382     36    10.5   344     ERRSC  
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0    89     ERRSC  
 (ALL) ERRORS:                  |D-E|   |D-E|/|D+E|   SR(D,E)    NP     PP     TN 
     ALL . . . . . . . . . .    7.973      0.758       0.379     74     8.8   845     ERRALL 
     SECONDARY STRUCTURE . .    7.630      0.766       0.383     56    10.1   557     ERRALL 
     SURFACE . . . . . . . .    7.973      0.758       0.379     74    11.3   656     ERRALL 
     BURIED  . . . . . . . .    0.000      0.000       0.000      0     0.0   189     ERRALL 
 
 
 
DISTANCES: Percent of total atoms where distance (target <-> model) in global 
           superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms 
            D < 1     D < 2     D < 3     D < 5    D < 10      NP      TN 
CA  (N)         0         0         1         6        25      38     103   DISTCA 
CA  (P)      0.00      0.00      0.97      5.83     24.27             103   DISTCA 
CA  (RMS)    0.00      0.00      2.02      3.46      6.85                   DISTCA 
 
ALL (N)         0         0         3        12        45      74     845   DISTALL 
ALL (P)      0.00      0.00      0.36      1.42      5.33             845   DISTALL 
ALL (RMS)    0.00      0.00      2.24      3.40      6.86                   DISTALL 
 
 
 
 
END of the results output 
